10 20 30 40 50 60 70 80 1QGP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 03-MAY-99 1QGP
TITLE NMR STRUCTURE OF THE Z-ALPHA DOMAIN OF ADAR1, 15 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DOUBLE STRANDED RNA ADENOSINE COMPND 3 DEAMINASE); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: Z-ALPHA DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 8 OTHER_DETAILS: HHHHHH HISTIDINE TAG WAS ADDED AT THE N- SOURCE 9 TERMINUS FOR EASE OF PURIFICATION
KEYWDS Z-ALPHA-Z-DNA BINDING DOMAIN, RNA-EDITING, Z-DNA KEYWDS 2 RECOGNITION, ADAR1, HELIX- TURN-HELIX, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR M.SCHADE,C.J.TURNER,R.KUEHNE,P.SCHMIEDER,K.LOWENHAUPT, AUTHOR 2 A.HERBERT,A.RICH,H.OSCHKINAT
REVDAT 3 24-FEB-09 1QGP 1 VERSN REVDAT 2 01-APR-03 1QGP 1 JRNL REVDAT 1 19-OCT-99 1QGP 0
JRNL AUTH M.SCHADE,C.J.TURNER,R.KUHNE,P.SCHMIEDER, JRNL AUTH 2 K.LOWENHAUPT,A.HERBERT,A.RICH,H.OSCHKINAT JRNL TITL THE SOLUTION STRUCTURE OF THE ZALPHA DOMAIN OF THE JRNL TITL 2 HUMAN RNA EDITING ENZYME ADAR1 REVEALS A JRNL TITL 3 PREPOSITIONED BINDING SURFACE FOR Z-DNA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 12465 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10535945 JRNL DOI 10.1073/PNAS.96.22.12465
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1QGP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-99. REMARK 100 THE RCSB ID CODE IS RCSB000988.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.137 M NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NA-PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY (1H, 13C, 15N), 15N REMARK 210 TOCSY-HSQC, 2D TOCSY, REMARK 210 HCCHTOCSY, HNCA, HN(CO)CA, REMARK 210 HNCACB, HN(CO)CACB, HNCO, REMARK 210 HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX750, DRX600, SELF-BUIL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION AND REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 SER A 125
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 132 -135.20 -64.27 REMARK 500 1 LEU A 133 -87.44 59.18 REMARK 500 1 GLU A 152 101.73 -58.04 REMARK 500 1 VAL A 199 91.72 -64.11 REMARK 500 2 GLU A 132 -133.94 -64.34 REMARK 500 2 LEU A 133 -88.87 59.81 REMARK 500 2 LYS A 154 96.21 -52.54 REMARK 500 3 GLN A 131 32.10 -91.93 REMARK 500 3 LEU A 133 -80.25 -112.70 REMARK 500 3 LEU A 150 -84.12 -54.34 REMARK 500 3 LYS A 154 89.87 -57.18 REMARK 500 4 GLN A 131 53.36 -96.51 REMARK 500 4 GLU A 132 42.38 -90.69 REMARK 500 4 SER A 134 -53.01 72.85 REMARK 500 4 LEU A 150 -81.66 -54.16 REMARK 500 4 LYS A 154 94.02 -53.48 REMARK 500 5 GLU A 132 81.86 -61.92 REMARK 500 5 LEU A 133 -84.05 -122.35 REMARK 500 5 LYS A 154 93.50 -53.84 REMARK 500 6 GLN A 131 40.84 -96.22 REMARK 500 6 GLU A 132 -144.53 -87.58 REMARK 500 6 LEU A 133 136.88 62.88 REMARK 500 6 SER A 134 -57.22 71.99 REMARK 500 6 LYS A 154 96.41 -52.43 REMARK 500 6 ALA A 155 171.68 -52.57 REMARK 500 7 GLU A 132 45.53 -108.19 REMARK 500 7 LEU A 133 -82.22 -108.72 REMARK 500 7 LYS A 154 93.91 -53.15 REMARK 500 7 ALA A 198 47.14 -88.09 REMARK 500 8 GLU A 132 -146.76 -108.32 REMARK 500 8 LEU A 133 135.05 60.53 REMARK 500 8 SER A 134 -56.23 71.53 REMARK 500 8 GLU A 152 91.34 -55.77 REMARK 500 8 VAL A 199 57.94 -90.14 REMARK 500 9 GLU A 132 66.99 -107.98 REMARK 500 9 LEU A 133 -82.49 -119.15 REMARK 500 9 GLU A 152 108.36 -52.11 REMARK 500 9 SER A 200 74.85 -119.04 REMARK 500 10 GLU A 132 49.82 -84.27 REMARK 500 10 LEU A 133 -79.16 -107.04 REMARK 500 10 LYS A 154 97.35 -49.57 REMARK 500 11 GLU A 132 -149.22 -108.04 REMARK 500 11 LEU A 133 -83.87 57.07 REMARK 500 11 LEU A 150 54.88 -94.11 REMARK 500 11 ALA A 155 -177.90 -53.38 REMARK 500 12 GLN A 131 49.33 -86.00 REMARK 500 12 LEU A 133 -83.15 -111.61 REMARK 500 12 LEU A 150 80.10 -64.25 REMARK 500 13 GLU A 132 -160.25 -108.08 REMARK 500 13 LEU A 133 133.49 63.30 REMARK 500 13 SER A 134 -56.42 72.10 REMARK 500 13 LEU A 150 -80.58 -58.76 REMARK 500 13 VAL A 199 85.06 -66.75 REMARK 500 14 HIS A 129 -66.11 -92.52 REMARK 500 14 LEU A 133 -85.55 -109.18 REMARK 500 14 ALA A 198 37.19 -92.39 REMARK 500 15 GLN A 131 53.53 -96.19 REMARK 500 15 LEU A 133 -80.65 -117.41 REMARK 500 15 LEU A 150 79.15 -63.67 REMARK 500 15 LYS A 154 95.73 -48.58 REMARK 500 15 ALA A 155 177.67 -52.21 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1QGP A 125 201 UNP P55265 DSRAD_HUMAN 125 201
SEQADV 1QGP SER A 125 UNP P55265 CYS 125 ENGINEERED SEQADV 1QGP ASP A 201 UNP P55265 THR 201 CONFLICT
SEQRES 1 A 77 SER LEU SER SER HIS PHE GLN GLU LEU SER ILE TYR GLN SEQRES 2 A 77 ASP GLN GLU GLN ARG ILE LEU LYS PHE LEU GLU GLU LEU SEQRES 3 A 77 GLY GLU GLY LYS ALA THR THR ALA HIS ASP LEU SER GLY SEQRES 4 A 77 LYS LEU GLY THR PRO LYS LYS GLU ILE ASN ARG VAL LEU SEQRES 5 A 77 TYR SER LEU ALA LYS LYS GLY LYS LEU GLN LYS GLU ALA SEQRES 6 A 77 GLY THR PRO PRO LEU TRP LYS ILE ALA VAL SER ASP
HELIX 1 1 TYR A 136 LEU A 150 1SEE REMARK 650 15 HELIX 2 2 ALA A 158 LEU A 165 1 8 HELIX 3 3 LYS A 169 LYS A 182 1 14
SHEET 1 S1 1 LYS A 154 THR A 157 0 SHEET 1 S2 1 LEU A 185 GLU A 188 0 SHEET 1 S3 1 LEU A 194 ILE A 197 0
CISPEP 1 THR A 191 PRO A 192 1 0.21 CISPEP 2 THR A 191 PRO A 192 2 0.24 CISPEP 3 THR A 191 PRO A 192 3 0.11 CISPEP 4 THR A 191 PRO A 192 4 0.06 CISPEP 5 THR A 191 PRO A 192 5 0.25 CISPEP 6 THR A 191 PRO A 192 6 0.13 CISPEP 7 THR A 191 PRO A 192 7 0.30 CISPEP 8 THR A 191 PRO A 192 8 0.16 CISPEP 9 THR A 191 PRO A 192 9 0.16 CISPEP 10 THR A 191 PRO A 192 10 0.17 CISPEP 11 THR A 191 PRO A 192 11 0.24 CISPEP 12 THR A 191 PRO A 192 12 0.14 CISPEP 13 THR A 191 PRO A 192 13 0.20 CISPEP 14 THR A 191 PRO A 192 14 0.09 CISPEP 15 THR A 191 PRO A 192 15 0.24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000