1QC8 - Header Asymmetric Unit

HEADER RNA 18-MAY-99 1QC8

TITLE NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAU EXON 10 SPLICING REGULATORY ELEMENT RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS

KEYWDS ALTERNATIVE MRNA SPLICING, FRONTOTEMPORAL DEMENTIA FTDP-17, KEYWDS 2 INTRONIC MUTATIONS, STEM-LOOP RNA STRUCTURE, TAU GENE EXON KEYWDS 3 10

EXPDTA SOLUTION NMR

NUMMDL 29

AUTHOR L.VARANI,M.G.SPILLANTINI,A.KLUG,M.GOEDERT,G.VARANI

REVDAT 4 24-FEB-09 1QC8 1 VERSN REVDAT 3 01-APR-03 1QC8 1 JRNL REVDAT 2 20-MAR-00 1QC8 3 ATOM REVDAT 1 31-AUG-99 1QC8 0

JRNL AUTH L.VARANI,M.HASEGAWA,M.G.SPILLANTINI,M.J.SMITH, JRNL AUTH 2 J.R.MURRELL,B.GHETTI,A.KLUG,M.GOEDERT,G.VARANI JRNL TITL STRUCTURE OF TAU EXON 10 SPLICING REGULATORY JRNL TITL 2 ELEMENT RNA AND DESTABILIZATION BY MUTATIONS OF JRNL TITL 3 FRONTOTEMPORAL DEMENTIA AND PARKINSONISM LINKED TO JRNL TITL 4 CHROMOSOME 17. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 8229 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10393977 JRNL DOI 10.1073/PNAS.96.14.8229

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE DISTANCE CONSTRAINTS: 564, REMARK 3 INTRARESIDUE: 331, SEQUENTIAL: 181, LONG AND MEDIUM RANGE: 52, REMARK 3 HYDROGEN BONDING AND PLANARITY CONSTRAINTS: 90, DIHEDRAL REMARK 3 CONSTRAINTS: 124, TOTAL EXPERIMENTAL CONSTRAINTS: 778, AVERAGE REMARK 3 NUMBER PER NUCLEOTIDE: 31.1

REMARK 4 REMARK 4 1QC8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB ON 21-MAY-99. REMARK 100 THE RCSB ID CODE IS RCSB009099.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 10MM NAPHOSPHATE BUFFER PH 6; REMARK 210 10MM NAPHOSPHATE BUFFER PH 6 REMARK 210 PRESSURE : NULL; NULL REMARK 210 SAMPLE CONTENTS : 1MM RNA, 10MM NAPHOSPHATE REMARK 210 BUFFER PH 6; 1MM RNA, U 15N, REMARK 210 13C, 10MM NAPHOSPHATE BUFFER REMARK 210 PH 6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, DQF-COSY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR, FELIX 2.10, FELIX 97 REMARK 210 METHOD USED : COMPLETELY RANDOM STARTING REMARK 210 COORDINATES X-PLOR BASED REMARK 210 SIMULATED ANNEALING PROTOCOL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 A A 13 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 19 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 21 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 23 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 23 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 13 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 19 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 21 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 23 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 23 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 546 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

DBREF 1QC8 A 1 25 PDB 1QC8 1QC8 1 25

SEQRES 1 A 25 G G C A G U G U G A G U A SEQRES 2 A 25 C C U U C A C A C G U C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000