10 20 30 40 50 60 70 80 1QA4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 12-APR-99 1QA4
TITLE HIV-1 NEF ANCHOR DOMAIN, NMR, 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (HIV-1 NEF ANCHOR DOMAIN (2-57)); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PROTEIN WAS CHEMICALLY SYNTHESIZED. SOURCE 4 THE SEQUENCE OF THIS PROTEIN IS NATURALLY FOUND IN HUMAN SOURCE 5 IMMUNODEFICIENCY VIRUS TYPE 1 (HIV-1), NL4-3 ISOLATE.
KEYWDS HIV, AIDS, REGULATORY FACTOR, NEGATIVE FACTOR, NEF, KEYWDS 2 MYRISTOYLATION, MYRISTYLATION, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 2
AUTHOR M.GEYER,H.R.KALBITZER
REVDAT 2 24-FEB-09 1QA4 1 VERSN REVDAT 1 26-MAY-99 1QA4 0
JRNL AUTH M.GEYER,C.E.MUNTE,J.SCHORR,R.KELLNER,H.R.KALBITZER JRNL TITL STRUCTURE OF THE ANCHOR-DOMAIN OF MYRISTOYLATED JRNL TITL 2 AND NON-MYRISTOYLATED HIV-1 NEF PROTEIN. JRNL REF J.MOL.BIOL. V. 289 123 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10339411 JRNL DOI 10.1006/JMBI.1999.2740
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.GRZESIEK,A.BAX,J.S.HU,J.KAUFMAN,I.PALMER, REMARK 1 AUTH 2 S.J.STAHL,N.TJANDRA,P.T.WINGFIELD REMARK 1 TITL REFINED SOLUTION STRUCTURE AND BACKBONE DYNAMICS REMARK 1 TITL 2 OF HIV-1 NEF REMARK 1 REF PROTEIN SCI. V. 6 1248 1997 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.J.BARNHAM,S.A.MONKS,M.G.HINDS,A.A.AZAD,R.S.NORTON REMARK 1 TITL SOLUTION STRUCTURE OF A POLYPEPTIDE FROM THE N REMARK 1 TITL 2 TERMINUS OF THE HIV PROTEIN NEF REMARK 1 REF BIOCHEMISTRY V. 36 5970 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI9629945 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.AROLD,P.FRANKEN,M.P.STRUB,F.HOH,S.BENICHOU, REMARK 1 AUTH 2 R.BENAROUS,C.DUMAS REMARK 1 TITL THE CRYSTAL STRUCTURE OF HIV-1 NEF PROTEIN BOUND REMARK 1 TITL 2 TO THE FYN KINASE SH3 DOMAIN SUGGESTS A ROLE FOR REMARK 1 TITL 3 THIS COMPLEX IN ALTERED T CELL RECEPTOR SIGNALING REMARK 1 REF STRUCTURE V. 5 1361 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(97)00286-4 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.H.LEE,K.SAKSELA,U.A.MIRZA,B.T.CHAIT,J.KURIYAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE CONSERVED CORE OF HIV-1 REMARK 1 TITL 2 NEF COMPLEXED WITH A SRC FAMILY SH3 DOMAIN REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 85 931 1996 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)81276-3 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.GRZESIEK,A.BAX,G.M.CLORE,A.M.GRONENBORN,J.S.HU, REMARK 1 AUTH 2 J.KAUFMAN,I.PALMER,S.J.STAHL,P.T.WINGFIELD REMARK 1 TITL THE SOLUTION STRUCTURE OF HIV-1 NEF REVEALS AN REMARK 1 TITL 2 UNEXPECTED FOLD AND PERMITS DELINEATION OF THE REMARK 1 TITL 3 BINDING SURFACE FOR THE SH3 DOMAIN OF HCK TYROSINE REMARK 1 TITL 4 PROTEIN KINASE REMARK 1 REF NAT.STRUCT.BIOL. V. 3 340 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.FREUND,R.KELLNER,J.KONVALINKA,V.WOLBER, REMARK 1 AUTH 2 H.G.KRAEUSSLICH,H.R.KALBITZER REMARK 1 TITL A POSSIBLE REGULATION OF NEGATIVE FACTOR (NEF) REMARK 1 TITL 2 ACTIVITY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BY REMARK 1 TITL 3 THE VIRAL PROTEASE REMARK 1 REF EUR.J.BIOCHEM. V. 223 589 1994 REMARK 1 REFN ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED WITH REMARK 3 X-PLOR, V. 3.851 (BRUNGER, 1992) USING A DISTANCE GEOMETRY/ REMARK 3 SIMULATED ANNEALING PROTOCOL (NILGES ET AL., FEBS LETT. 229, REMARK 3 317 (1988)).
REMARK 4 REMARK 4 1QA4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-99. REMARK 100 THE RCSB ID CODE IS RCSB000835.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285.0 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX-500, DMX-800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, KARLSRUHE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.0, X-PLOR 3.851 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 2 REMARK 210 CONFORMERS, SELECTION CRITERIA : TWO STRUCTURES WITH LOW TOTAL REMARK 210 ENERGY WERE SELECTED SHOWING REMARK 210 THE CONFORMATIONAL VARIETY OF REMARK 210 THE FLEXIBLE DOMAIN REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 16 -56.29 -128.24 REMARK 500 1 ARG A 17 152.08 177.75 REMARK 500 1 ALA A 42 39.79 -96.16 REMARK 500 1 ASN A 51 -163.27 48.17 REMARK 500 1 ALA A 54 152.36 72.95 REMARK 500 2 VAL A 11 158.05 72.52 REMARK 500 2 ALA A 15 51.46 -105.33 REMARK 500 2 VAL A 16 -66.78 70.99 REMARK 500 2 ARG A 17 -45.48 80.31 REMARK 500 2 ASP A 28 -178.01 64.65 REMARK 500 2 ARG A 35 -82.38 -82.52 REMARK 500 2 ASP A 36 -72.45 -95.27 REMARK 500 2 ALA A 49 -174.48 62.36 REMARK 500 2 ALA A 50 -172.85 63.77 REMARK 500 2 ASN A 52 -178.45 64.79 REMARK 500 2 ALA A 54 -84.11 67.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 58
DBREF 1QA4 A 2 57 UNP P04324 NEF_HV112 2 57
SEQRES 1 A 57 GLY GLY LYS TRP SER LYS SER SER VAL VAL GLY TRP PRO SEQRES 2 A 57 ALA VAL ARG GLU ARG MET ARG ARG ALA GLU PRO ALA ALA SEQRES 3 A 57 ASP GLY VAL GLY ALA ALA SER ARG ASP LEU GLU LYS HIS SEQRES 4 A 57 GLY ALA ILE THR SER SER ASN THR ALA ALA ASN ASN ALA SEQRES 5 A 57 ALA CYS ALA TRP NH2
HET NH2 A 58 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
HELIX 1 1 LEU A 37 HIS A 40 1 4
LINK C TRP A 57 N NH2 A 58 1555 1555 1.33
SITE 1 AC1 2 ALA A 56 TRP A 57
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000