10 20 30 40 50 60 70 80 1Q9Y - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE, REPLICATION/DNA 26-AUG-03 1Q9Y
TITLE CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA TITLE 2 POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3'; COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3'; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: GP43; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA SYNTHESIZER; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: DNA SYNTHESIZER; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE RB69; SOURCE 9 ORGANISM_TAXID: 12353; SOURCE 10 GENE: 43; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PQE30
KEYWDS PROTEIN_DNA COMPLEX, TRANSFERASE, REPLICATION/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR E.FREISINGER,A.P.GROLLMAN,H.MILLER,C.KISKER
REVDAT 2 24-FEB-09 1Q9Y 1 VERSN REVDAT 1 27-APR-04 1Q9Y 0
JRNL AUTH E.FREISINGER,A.P.GROLLMAN,H.MILLER,C.KISKER JRNL TITL LESION (IN)TOLERANCE REVEALS INSIGHTS INTO DNA JRNL TITL 2 REPLICATION FIDELITY. JRNL REF EMBO J. V. 23 1494 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15057282 JRNL DOI 10.1038/SJ.EMBOJ.7600158
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1975 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : NULL REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : NULL REMARK 3 SOLVENT ATOMS : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8297 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 7029 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11354 ; 1.865 ; 2.059 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16480 ; 0.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 901 ; 7.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1172 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8688 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1579 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1925 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8279 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4841 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.330 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4501 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7294 ; 1.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3796 ; 1.732 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4060 ; 2.818 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 111 REMARK 3 RESIDUE RANGE : A 343 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2029 58.3823 31.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: 0.0545 REMARK 3 T33: 0.1551 T12: 0.0098 REMARK 3 T13: 0.0131 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.0503 L22: 4.4357 REMARK 3 L33: 1.3370 L12: 1.2163 REMARK 3 L13: -0.1607 L23: -1.0228 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0809 S13: 0.1537 REMARK 3 S21: 0.0561 S22: -0.1016 S23: -0.5821 REMARK 3 S31: -0.1146 S32: 0.2196 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4377 35.9586 50.7125 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: 0.0273 REMARK 3 T33: 0.0252 T12: -0.0006 REMARK 3 T13: -0.0285 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1563 L22: 2.0720 REMARK 3 L33: 3.4407 L12: 0.4113 REMARK 3 L13: 0.1624 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.2079 S13: 0.0628 REMARK 3 S21: 0.4112 S22: -0.0830 S23: 0.0173 REMARK 3 S31: -0.0683 S32: -0.2002 S33: 0.0681 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 471 REMARK 3 RESIDUE RANGE : A 576 A 732 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1683 49.1892 5.9852 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.1694 REMARK 3 T33: 0.0333 T12: 0.0190 REMARK 3 T13: -0.0115 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.4173 L22: 1.4783 REMARK 3 L33: 0.7883 L12: 0.5440 REMARK 3 L13: -0.1647 L23: -0.4336 REMARK 3 S TENSOR REMARK 3 S11: -0.0950 S12: 0.4635 S13: -0.0642 REMARK 3 S21: -0.5998 S22: 0.1094 S23: -0.0011 REMARK 3 S31: 0.2434 S32: -0.0965 S33: -0.0145 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9820 29.8740 17.8943 REMARK 3 T TENSOR REMARK 3 T11: 0.2598 T22: 0.1536 REMARK 3 T33: 0.0637 T12: 0.0625 REMARK 3 T13: 0.0421 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.3462 L22: 6.0042 REMARK 3 L33: 0.8018 L12: 0.7785 REMARK 3 L13: 0.3701 L23: 0.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.2411 S13: -0.4150 REMARK 3 S21: -0.3019 S22: 0.0968 S23: -0.4153 REMARK 3 S31: 0.4883 S32: 0.1369 S33: -0.0776 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 733 A 902 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1447 38.2119 36.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.1522 REMARK 3 T33: 0.1525 T12: 0.0068 REMARK 3 T13: 0.0175 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 1.7856 L22: 2.4524 REMARK 3 L33: 2.5386 L12: 0.0758 REMARK 3 L13: -0.0747 L23: 0.8571 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: -0.2428 S13: -0.1512 REMARK 3 S21: 0.0947 S22: -0.0130 S23: 0.3235 REMARK 3 S31: 0.0406 S32: -0.4041 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 907 T 924 REMARK 3 RESIDUE RANGE : P 925 P 938 REMARK 3 RESIDUE RANGE : P 939 P 939 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2807 56.3956 28.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.1257 REMARK 3 T33: 0.1201 T12: 0.0182 REMARK 3 T13: 0.0064 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 6.8528 L22: 1.2520 REMARK 3 L33: -0.0519 L12: -1.3238 REMARK 3 L13: -1.5303 L23: -0.6223 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.2508 S13: 0.3238 REMARK 3 S21: 0.0284 S22: 0.0162 S23: 0.4117 REMARK 3 S31: -0.1146 S32: -0.1355 S33: 0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1Q9Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020101.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0777 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.84 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IG9 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 350MME, CALCIUM CHLORIDE, TRIS- REMARK 280 HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, REMARK 280 PH 7.50
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.41100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.61200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.28250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.61200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.41100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.28250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 903 REMARK 465 PHE A 904 REMARK 465 ASP A 905 REMARK 465 PHE A 906
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 256 O ARG A 263 2.05 REMARK 500 O ASP A 795 O PHE A 799 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 923 O3' DC T 923 C3' -0.039 REMARK 500 DC P 933 O3' DC P 933 C3' -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 908 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC T 908 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG T 910 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DG T 910 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG T 911 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT T 912 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT T 912 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA T 913 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA T 913 N1 - C2 - N3 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA T 914 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA T 914 N1 - C6 - N6 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG T 915 O5' - C5' - C4' ANGL. DEV. = -7.6 DEGREES REMARK 500 DG T 915 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG T 915 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC T 916 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA T 917 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC T 916 C3' - O3' - P ANGL. DEV. = 10.4 DEGREES REMARK 500 DG T 918 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT T 919 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC T 921 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DG T 922 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC T 923 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC T 923 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG T 924 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG P 925 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG P 925 C3' - O3' - P ANGL. DEV. = 10.2 DEGREES REMARK 500 DC P 926 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DG P 928 O4' - C1' - N9 ANGL. DEV. = 7.8 DEGREES REMARK 500 DA P 929 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA P 929 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC P 930 OP1 - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DC P 930 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC P 930 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT P 931 O4' - C1' - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DG P 932 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG P 932 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG P 932 C8 - N9 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DC P 933 O5' - P - OP2 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC P 933 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DC P 933 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT P 934 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT P 935 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT P 935 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA P 936 O5' - P - OP2 ANGL. DEV. = -9.2 DEGREES REMARK 500 DA P 936 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 187 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 294 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 444 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -158.08 -164.92 REMARK 500 ASP A 16 42.03 -100.11 REMARK 500 GLN A 48 53.04 -65.22 REMARK 500 THR A 50 -143.64 -171.11 REMARK 500 TYR A 100 54.99 -104.69 REMARK 500 GLU A 184 1.11 -69.56 REMARK 500 ASP A 195 -63.28 -19.13 REMARK 500 ASN A 220 39.58 76.08 REMARK 500 PHE A 224 -80.30 -119.60 REMARK 500 TYR A 230 -70.01 -66.23 REMARK 500 ILE A 256 86.82 29.65 REMARK 500 GLU A 257 51.14 -116.43 REMARK 500 ASN A 258 177.55 37.51 REMARK 500 TYR A 260 99.31 -167.61 REMARK 500 SER A 262 46.15 -167.95 REMARK 500 LEU A 306 71.49 92.66 REMARK 500 LYS A 355 70.76 61.31 REMARK 500 LEU A 418 -70.55 -38.00 REMARK 500 ASN A 427 50.80 71.88 REMARK 500 PRO A 461 1.71 -66.45 REMARK 500 LEU A 511 98.84 -66.76 REMARK 500 PHE A 525 99.29 -24.27 REMARK 500 LYS A 539 -51.65 -26.28 REMARK 500 TYR A 581 128.03 -38.50 REMARK 500 ASP A 582 110.67 -160.35 REMARK 500 THR A 614 -161.68 -65.94 REMARK 500 THR A 625 -59.06 46.75 REMARK 500 VAL A 639 -67.43 -106.82 REMARK 500 SER A 642 -120.08 -84.47 REMARK 500 ARG A 661 -44.31 -135.75 REMARK 500 GLU A 689 -80.59 -103.28 REMARK 500 LYS A 709 30.22 70.54 REMARK 500 ARG A 710 89.72 -152.23 REMARK 500 ASP A 795 -96.23 -63.84 REMARK 500 VAL A 796 72.73 77.73 REMARK 500 ASN A 815 -27.77 -39.35 REMARK 500 LYS A 819 131.99 -25.96 REMARK 500 LEU A 860 -58.10 -23.16 REMARK 500 LYS A 891 64.98 63.85 REMARK 500 ALA A 898 93.15 -66.33 REMARK 500 LEU A 900 -8.41 68.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 3 MET A 4 -143.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 939 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 OD2 REMARK 620 2 ASP A 626 OD1 71.1 REMARK 620 3 DCP P 939 O2A 95.7 64.7 REMARK 620 4 LEU A 415 O 81.6 105.1 169.7 REMARK 620 5 DCP P 939 O2B 171.9 101.0 79.1 102.4 REMARK 620 6 DCP P 939 O1G 94.2 138.7 79.3 110.7 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 940 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 OD1 REMARK 620 2 GLU A 689 OE1 61.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 941 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 OD2 REMARK 620 2 ASP A 626 OD1 43.3 REMARK 620 3 DCP P 939 O2A 69.3 52.0 REMARK 620 4 ASP A 626 OD2 81.1 42.4 76.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 939 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 940 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 941 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP P 939
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q9X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA REMARK 900 POLYMERASE COMPLEXED WITH TETRAHYDROFURAN CONTAINING DNA
DBREF 1Q9Y A 4 906 UNP Q38087 DPOL_BPR69 1 903 DBREF 1Q9Y T 907 924 PDB 1Q9Y 1Q9Y 907 924 DBREF 1Q9Y P 925 938 PDB 1Q9Y 1Q9Y 925 938
SEQADV 1Q9Y HIS A 1 UNP Q38087 CLONING ARTIFACT SEQADV 1Q9Y GLY A 2 UNP Q38087 CLONING ARTIFACT SEQADV 1Q9Y SER A 3 UNP Q38087 CLONING ARTIFACT SEQADV 1Q9Y ALA A 225 UNP Q38087 ASP 222 ENGINEERED SEQADV 1Q9Y ALA A 330 UNP Q38087 ASP 327 ENGINEERED
SEQRES 1 T 18 DA DC 8OG DG DG DT DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 14 DG DC DG DG DA DC DT DG DC DT DT DA DC SEQRES 2 P 14 DOC SEQRES 1 A 906 HIS GLY SER MET LYS GLU PHE TYR LEU THR VAL GLU GLN SEQRES 2 A 906 ILE GLY ASP SER ILE PHE GLU ARG TYR ILE ASP SER ASN SEQRES 3 A 906 GLY ARG GLU ARG THR ARG GLU VAL GLU TYR LYS PRO SER SEQRES 4 A 906 LEU PHE ALA HIS CYS PRO GLU SER GLN ALA THR LYS TYR SEQRES 5 A 906 PHE ASP ILE TYR GLY LYS PRO CYS THR ARG LYS LEU PHE SEQRES 6 A 906 ALA ASN MET ARG ASP ALA SER GLN TRP ILE LYS ARG MET SEQRES 7 A 906 GLU ASP ILE GLY LEU GLU ALA LEU GLY MET ASP ASP PHE SEQRES 8 A 906 LYS LEU ALA TYR LEU SER ASP THR TYR ASN TYR GLU ILE SEQRES 9 A 906 LYS TYR ASP HIS THR LYS ILE ARG VAL ALA ASN PHE ASP SEQRES 10 A 906 ILE GLU VAL THR SER PRO ASP GLY PHE PRO GLU PRO SER SEQRES 11 A 906 GLN ALA LYS HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SEQRES 12 A 906 SER ILE ASP ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SEQRES 13 A 906 SER PRO TYR GLY ASN VAL GLU GLU TRP SER ILE GLU ILE SEQRES 14 A 906 ALA ALA LYS LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SEQRES 15 A 906 SER GLU ILE ILE ASP LYS ILE ILE TYR MET PRO PHE ASP SEQRES 16 A 906 ASN GLU LYS GLU LEU LEU MET GLU TYR LEU ASN PHE TRP SEQRES 17 A 906 GLN GLN LYS THR PRO VAL ILE LEU THR GLY TRP ASN VAL SEQRES 18 A 906 GLU SER PHE ALA ILE PRO TYR VAL TYR ASN ARG ILE LYS SEQRES 19 A 906 ASN ILE PHE GLY GLU SER THR ALA LYS ARG LEU SER PRO SEQRES 20 A 906 HIS ARG LYS THR ARG VAL LYS VAL ILE GLU ASN MET TYR SEQRES 21 A 906 GLY SER ARG GLU ILE ILE THR LEU PHE GLY ILE SER VAL SEQRES 22 A 906 LEU ASP TYR ILE ASP LEU TYR LYS LYS PHE SER PHE THR SEQRES 23 A 906 ASN GLN PRO SER TYR SER LEU ASP TYR ILE SER GLU PHE SEQRES 24 A 906 GLU LEU ASN VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SEQRES 25 A 906 SER LYS LEU ARG GLU SER ASN HIS GLN ARG TYR ILE SER SEQRES 26 A 906 TYR ASN ILE ILE ALA VAL TYR ARG VAL LEU GLN ILE ASP SEQRES 27 A 906 ALA LYS ARG GLN PHE ILE ASN LEU SER LEU ASP MET GLY SEQRES 28 A 906 TYR TYR ALA LYS ILE GLN ILE GLN SER VAL PHE SER PRO SEQRES 29 A 906 ILE LYS THR TRP ASP ALA ILE ILE PHE ASN SER LEU LYS SEQRES 30 A 906 GLU GLN ASN LYS VAL ILE PRO GLN GLY ARG SER HIS PRO SEQRES 31 A 906 VAL GLN PRO TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE SEQRES 32 A 906 PRO ASN ARG TYR LYS TYR VAL MET SER PHE ASP LEU THR SEQRES 33 A 906 SER LEU TYR PRO SER ILE ILE ARG GLN VAL ASN ILE SER SEQRES 34 A 906 PRO GLU THR ILE ALA GLY THR PHE LYS VAL ALA PRO LEU SEQRES 35 A 906 HIS ASP TYR ILE ASN ALA VAL ALA GLU ARG PRO SER ASP SEQRES 36 A 906 VAL TYR SER CYS SER PRO ASN GLY MET MET TYR TYR LYS SEQRES 37 A 906 ASP ARG ASP GLY VAL VAL PRO THR GLU ILE THR LYS VAL SEQRES 38 A 906 PHE ASN GLN ARG LYS GLU HIS LYS GLY TYR MET LEU ALA SEQRES 39 A 906 ALA GLN ARG ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS SEQRES 40 A 906 ASN PRO ASN LEU SER VAL ASP GLU PRO LEU ASP VAL ASP SEQRES 41 A 906 TYR ARG PHE ASP PHE SER ASP GLU ILE LYS GLU LYS ILE SEQRES 42 A 906 LYS LYS LEU SER ALA LYS SER LEU ASN GLU MET LEU PHE SEQRES 43 A 906 ARG ALA GLN ARG THR GLU VAL ALA GLY MET THR ALA GLN SEQRES 44 A 906 ILE ASN ARG LYS LEU LEU ILE ASN SER LEU TYR GLY ALA SEQRES 45 A 906 LEU GLY ASN VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN SEQRES 46 A 906 ALA THR ALA ILE THR THR PHE GLY GLN MET ALA LEU GLN SEQRES 47 A 906 TRP ILE GLU ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL SEQRES 48 A 906 CYS GLY THR GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP SEQRES 49 A 906 THR ASP SER ILE TYR VAL SER ALA ASP LYS ILE ILE ASP SEQRES 50 A 906 LYS VAL GLY GLU SER LYS PHE ARG ASP THR ASN HIS TRP SEQRES 51 A 906 VAL ASP PHE LEU ASP LYS PHE ALA ARG GLU ARG MET GLU SEQRES 52 A 906 PRO ALA ILE ASP ARG GLY PHE ARG GLU MET CYS GLU TYR SEQRES 53 A 906 MET ASN ASN LYS GLN HIS LEU MET PHE MET ASP ARG GLU SEQRES 54 A 906 ALA ILE ALA GLY PRO PRO LEU GLY SER LYS GLY ILE GLY SEQRES 55 A 906 GLY PHE TRP THR GLY LYS LYS ARG TYR ALA LEU ASN VAL SEQRES 56 A 906 TRP ASP MET GLU GLY THR ARG TYR ALA GLU PRO LYS LEU SEQRES 57 A 906 LYS ILE MET GLY LEU GLU THR GLN LYS SER SER THR PRO SEQRES 58 A 906 LYS ALA VAL GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG SEQRES 59 A 906 MET LEU GLN GLU GLY GLU GLU SER LEU GLN GLU TYR PHE SEQRES 60 A 906 LYS GLU PHE GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SEQRES 61 A 906 SER ILE ALA SER VAL SER SER ALA ASN ASN ILE ALA LYS SEQRES 62 A 906 TYR ASP VAL GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE SEQRES 63 A 906 HIS ILE ARG GLY ILE LEU THR TYR ASN ARG ALA ILE LYS SEQRES 64 A 906 GLY ASN ILE ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS SEQRES 65 A 906 VAL TYR VAL LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY SEQRES 66 A 906 ASP LYS CYS ILE ALA TRP PRO SER GLY THR GLU ILE THR SEQRES 67 A 906 ASP LEU ILE LYS ASP ASP VAL LEU HIS TRP MET ASP TYR SEQRES 68 A 906 THR VAL LEU LEU GLU LYS THR PHE ILE LYS PRO LEU GLU SEQRES 69 A 906 GLY PHE THR SER ALA ALA LYS LEU ASP TYR GLU LYS LYS SEQRES 70 A 906 ALA SER LEU PHE ASP MET PHE ASP PHE
MODRES 1Q9Y 8OG T 909 DG MODRES 1Q9Y DOC P 938 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
HET 8OG T 909 23 HET DOC P 938 18 HET CA A 939 1 HET CA A 940 1 HET CA A 941 1 HET DCP P 939 28
HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
FORMUL 1 8OG C10 H14 N5 O8 P FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 CA 3(CA 2+) FORMUL 7 DCP C9 H16 N3 O13 P3 FORMUL 8 HOH *84(H2 O)
HELIX 1 1 ASN A 67 GLY A 82 1 16 HELIX 2 2 ASP A 90 TYR A 100 1 11 HELIX 3 3 ASP A 107 ILE A 111 5 5 HELIX 4 4 SER A 166 LYS A 172 1 7 HELIX 5 5 LEU A 173 GLY A 177 5 5 HELIX 6 6 ILE A 185 ASP A 187 5 3 HELIX 7 7 ASN A 196 LYS A 211 1 16 HELIX 8 8 PHE A 224 GLY A 238 1 15 HELIX 9 9 GLY A 238 LYS A 243 1 6 HELIX 10 10 ARG A 244 SER A 246 5 3 HELIX 11 11 ASP A 275 SER A 284 1 10 HELIX 12 12 SER A 292 ASN A 302 1 11 HELIX 13 13 PRO A 311 SER A 313 5 3 HELIX 14 14 LYS A 314 ASN A 319 1 6 HELIX 15 15 ASN A 319 GLN A 342 1 24 HELIX 16 16 GLN A 342 LYS A 355 1 14 HELIX 17 17 GLN A 357 PHE A 362 5 6 HELIX 18 18 SER A 363 GLU A 378 1 16 HELIX 19 19 SER A 417 ASN A 427 1 11 HELIX 20 20 PRO A 441 ASN A 447 1 7 HELIX 21 21 GLY A 472 LEU A 506 1 35 HELIX 22 22 SER A 526 LYS A 534 1 9 HELIX 23 23 SER A 537 LEU A 573 1 37 HELIX 24 24 ASP A 582 GLY A 613 1 32 HELIX 25 25 ALA A 632 LYS A 638 1 7 HELIX 26 26 ASP A 646 ARG A 661 1 16 HELIX 27 27 ARG A 661 MET A 677 1 17 HELIX 28 28 LEU A 733 LYS A 737 5 5 HELIX 29 29 PRO A 741 GLU A 758 1 18 HELIX 30 30 GLU A 758 PHE A 774 1 17 HELIX 31 31 ARG A 775 LEU A 777 5 3 HELIX 32 32 ASN A 778 ALA A 783 1 6 HELIX 33 33 ASN A 790 ASP A 795 5 6 HELIX 34 34 PRO A 805 ILE A 818 1 14 HELIX 35 35 THR A 858 MET A 869 1 12 HELIX 36 36 ASP A 870 PHE A 879 1 10 HELIX 37 37 PHE A 879 LYS A 891 1 13
SHEET 1 A 3 PHE A 7 ILE A 14 0 SHEET 2 A 3 SER A 17 ILE A 23 -1 O ARG A 21 N LEU A 9 SHEET 3 A 3 GLU A 29 VAL A 34 -1 O ARG A 30 N TYR A 22 SHEET 1 B 2 SER A 39 HIS A 43 0 SHEET 2 B 2 CYS A 60 LEU A 64 -1 O THR A 61 N ALA A 42 SHEET 1 C 2 PHE A 53 ASP A 54 0 SHEET 2 C 2 LYS A 381 VAL A 382 1 O VAL A 382 N PHE A 53 SHEET 1 D 6 ILE A 189 PHE A 194 0 SHEET 2 D 6 ARG A 148 LEU A 154 1 N VAL A 151 O ILE A 190 SHEET 3 D 6 ALA A 138 ASP A 143 -1 N HIS A 141 O TYR A 150 SHEET 4 D 6 VAL A 113 GLU A 119 -1 N GLU A 119 O ALA A 138 SHEET 5 D 6 ILE A 215 THR A 217 1 O ILE A 215 N ALA A 114 SHEET 6 D 6 SER A 272 VAL A 273 1 O SER A 272 N LEU A 216 SHEET 1 E 2 ASN A 156 SER A 157 0 SHEET 2 E 2 GLY A 160 ASN A 161 -1 O GLY A 160 N SER A 157 SHEET 1 F 2 THR A 251 LYS A 254 0 SHEET 2 F 2 ILE A 265 LEU A 268 -1 O THR A 267 N ARG A 252 SHEET 1 G 7 ASN A 405 ARG A 406 0 SHEET 2 G 7 GLY A 703 GLY A 707 -1 O TRP A 705 N ASN A 405 SHEET 3 G 7 ARG A 710 MET A 718 -1 O ARG A 710 N THR A 706 SHEET 4 G 7 MET A 686 ALA A 692 -1 N ILE A 691 O TRP A 716 SHEET 5 G 7 VAL A 410 LEU A 415 -1 N ASP A 414 O ASP A 687 SHEET 6 G 7 SER A 627 SER A 631 -1 O VAL A 630 N MET A 411 SHEET 7 G 7 VAL A 620 TYR A 622 -1 N LEU A 621 O TYR A 629 SHEET 1 H 4 ASN A 405 ARG A 406 0 SHEET 2 H 4 GLY A 703 GLY A 707 -1 O TRP A 705 N ASN A 405 SHEET 3 H 4 ARG A 710 MET A 718 -1 O ARG A 710 N THR A 706 SHEET 4 H 4 THR A 721 MET A 731 -1 O MET A 731 N TYR A 711 SHEET 1 I 3 ILE A 433 THR A 436 0 SHEET 2 I 3 MET A 464 TYR A 466 -1 O MET A 465 N ALA A 434 SHEET 3 I 3 SER A 458 CYS A 459 -1 N SER A 458 O TYR A 466 SHEET 1 J 3 SER A 784 SER A 787 0 SHEET 2 J 3 LYS A 832 PRO A 837 -1 O VAL A 833 N SER A 786 SHEET 3 J 3 CYS A 848 PRO A 852 -1 O TRP A 851 N TYR A 834
LINK CA CA A 939 OD2 ASP A 414 1555 1555 1.93 LINK CA CA A 939 OD1 ASP A 626 1555 1555 2.06 LINK CA CA A 939 O2A DCP P 939 1555 1555 2.58 LINK CA CA A 939 O LEU A 415 1555 1555 2.37 LINK CA CA A 939 O2B DCP P 939 1555 1555 2.17 LINK CA CA A 939 O1G DCP P 939 1555 1555 2.27 LINK CA CA A 940 OD1 ASP A 414 1555 1555 3.16 LINK CA CA A 940 OE1 GLU A 689 1555 1555 2.75 LINK CA CA A 941 OD2 ASP A 414 1555 1555 3.23 LINK CA CA A 941 OD1 ASP A 626 1555 1555 3.05 LINK CA CA A 941 O2A DCP P 939 1555 1555 2.63 LINK CA CA A 941 OD2 ASP A 626 1555 1555 2.89 LINK O3' DC P 937 P DOC P 938 1555 1555 1.61 LINK O3' DC T 908 P 8OG T 909 1555 1555 1.59 LINK O3' 8OG T 909 P DG T 910 1555 1555 1.60
SITE 1 AC1 4 ASP A 414 LEU A 415 ASP A 626 DCP P 939 SITE 1 AC2 3 ASP A 414 GLU A 689 GLU A 719 SITE 1 AC3 3 ASP A 414 ASP A 626 DCP P 939 SITE 1 AC4 15 ASP A 414 LEU A 415 SER A 417 LEU A 418 SITE 2 AC4 15 TYR A 419 ARG A 485 LYS A 563 ASN A 567 SITE 3 AC4 15 THR A 625 ASP A 626 CA A 939 CA A 941 SITE 4 AC4 15 DOC P 938 8OG T 909 DG T 910
CRYST1 80.822 118.565 127.224 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012373 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008434 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007860 0.00000