10 20 30 40 50 60 70 80 1Q9W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 26-AUG-03 1Q9W
TITLE S45-18 FAB PENTASACCHARIDE BISPHOSPHATE COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: S45-18 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: FAB1 LIGHT CHAIN KAPPA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S45-18 FAB (IGG1K) HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 FRAGMENT: FAB1 HEAVY CHAIN G1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090
KEYWDS ANTIGEN-BINDING FRAGMENT, FAB, ANTI-CABOHYDRATE, ANTI-LPS, KEYWDS 2 ANTIBODY, IMMUNOGLOBULIN, KDO, PROTEIN-CARBOHYDRATE COMPLEX, KEYWDS 3 IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE, AUTHOR 2 S.V.EVANS
REVDAT 2 24-FEB-09 1Q9W 1 VERSN REVDAT 1 27-JAN-04 1Q9W 0
JRNL AUTH H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA, JRNL AUTH 2 H.BRADE,S.V.EVANS JRNL TITL GERMLINE ANTIBODY RECOGNITION OF DISTINCT JRNL TITL 2 CARBOHYDRATE EPITOPES. JRNL REF NAT.STRUCT.BIOL. V. 10 1019 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625588 JRNL DOI 10.1038/NSB1014
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 99720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9994 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7577 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 878 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 767 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.24000 REMARK 3 B22 (A**2) : -4.30000 REMARK 3 B33 (A**2) : 7.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 53.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : KDO6.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : KDO6.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1Q9W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020099.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99720 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Q9O, S45-18 FAB UNLIGANDED REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTASACCHARIDE, MAGNESIUM REMARK 280 CHLORIDE, PEG 4000, TRIS, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 106.80000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 227.80000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 66.95000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN C 30A O THR C 30D 2.06 REMARK 500 O6 KDO B 301 O5A GP4 B 304 2.14 REMARK 500 OE1 GLN D 103 O HOH D 259 2.14 REMARK 500 O4 KDO C 311 O6 KDO C 312 2.16 REMARK 500 O4 KDO B 301 O6 KDO B 302 2.16 REMARK 500 O TRP B 152 O THR B 192 2.17 REMARK 500 O4 KDO C 312 O6 KDO C 313 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 138 CA - CB - SG ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -41.91 69.16 REMARK 500 ALA A 84 175.62 175.81 REMARK 500 LEU A 94 -142.94 57.48 REMARK 500 SER A 170 15.87 57.91 REMARK 500 ARG A 210 -40.37 79.42 REMARK 500 ASP B 95 -160.32 -102.76 REMARK 500 ARG B 100 -173.51 -175.73 REMARK 500 SER B 126 70.47 -69.71 REMARK 500 ALA B 127 96.08 -167.18 REMARK 500 GLN B 129 -174.77 73.03 REMARK 500 THR B 130 92.29 -43.68 REMARK 500 SER B 132 -62.34 149.55 REMARK 500 TRP B 152 -87.94 -105.89 REMARK 500 SER B 158 162.06 -48.46 REMARK 500 SER B 159 133.80 66.82 REMARK 500 SER B 170 -108.64 70.45 REMARK 500 ARG B 211 42.54 95.43 REMARK 500 ALA C 51 -36.51 69.43 REMARK 500 SER C 77 76.49 49.35 REMARK 500 ALA C 84 175.31 177.68 REMARK 500 LEU C 94 -143.12 62.35 REMARK 500 ASN C 189 -67.26 -105.32 REMARK 500 THR C 199 -4.37 -57.50 REMARK 500 SER C 200 148.39 -174.54 REMARK 500 ARG C 210 -58.48 73.60 REMARK 500 PRO D 41 -75.70 -15.69 REMARK 500 ASP D 95 -160.24 -103.93 REMARK 500 ARG D 100 -174.71 -176.34 REMARK 500 ALA D 128 -144.35 24.69 REMARK 500 GLN D 129 93.38 -166.93 REMARK 500 ASN D 131 -168.49 178.78 REMARK 500 MET D 133 130.30 78.19 REMARK 500 ARG D 211 65.17 98.45 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 312 O REMARK 620 2 PHE A 97 N 132.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 215 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 22 O REMARK 620 2 THR A 101 OG1 115.8 REMARK 620 3 GLN A 6 NE2 108.9 86.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 377 O REMARK 620 2 HOH B 376 O 172.9 REMARK 620 3 HOH B 378 O 84.2 88.8 REMARK 620 4 GLU B 56 OE2 89.4 89.3 91.7 REMARK 620 5 HOH B 379 O 94.3 92.6 177.6 86.5 REMARK 620 6 GLU D 56 OE2 91.6 90.9 97.4 170.9 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 344 O REMARK 620 2 PHE C 97 N 135.9 REMARK 620 3 TRP D 47 N 76.5 115.9 REMARK 620 4 HOH C 397 O 116.0 93.5 122.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 22 O REMARK 620 2 GLN C 6 NE2 112.1 REMARK 620 3 THR C 101 OG1 121.2 84.7 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO B 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO B 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO B 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP4 B 304 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GP1 B 305 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO C 311 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO C 312 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO C 313 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 306 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 214 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 314 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 215 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 315
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q9O RELATED DB: PDB REMARK 900 THE SAME ANTIBODY S45-18, BUT UNLIGANDED REMARK 900 RELATED ID: 1Q9Q RELATED DB: PDB REMARK 900 RELATED AB S25-2 LIGANDED WITH A(2-8)-A(2-4) KDO REMARK 900 TRISACCHARIDE REMARK 900 RELATED ID: 1Q9R RELATED DB: PDB REMARK 900 RELATED AB S25-2 LIGANDED WITH A(2-8) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9T RELATED DB: PDB REMARK 900 RELATED AB S25-2 LIGANDED WITH A(2-4) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9V RELATED DB: PDB REMARK 900 RELATED AB S25-2 LIGANDED WITH KDO MONOSACCHARIDE REMARK 900 RELATED ID: 1Q9K RELATED DB: PDB REMARK 900 RELATED AB S25-2 UNLIGANDED REMARK 900 RELATED ID: 1Q9L RELATED DB: PDB REMARK 900 S25-2 FAB UNLIGANDED DIFFERENT CRYSTAL FORM
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT DEPOSITED REMARK 999 INTO ANY SEQUENCE DATABASE. REMARK 999 CHAINS E AND F ARE BOUND LIGANDS PENTASACCHARIDE REMARK 999 BISPHOSPHATE ALPHAKDO-(2-4)-ALPHAKDO-(2-4)-ALPHAKDO REMARK 999 -(2-6)-BETAGLCN-4P-(1-6)-ALPHAGLCN-1P TO FAB2. REMARK 999 FOR THE CHAIN F ONLY KDO TRISACCHARIDE VISIBLE.
DBREF 1Q9W A 1 213 PDB 1Q9W 1Q9W 1 213 DBREF 1Q9W B 1 213 PDB 1Q9W 1Q9W 1 213 DBREF 1Q9W C 1 213 PDB 1Q9W 1Q9W 1 213 DBREF 1Q9W D 1 213 PDB 1Q9W 1Q9W 1 213
SEQRES 1 A 219 ASP ILE VAL MET SER GLN PHE PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS SER TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN PHE PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA ALA THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 226 GLU VAL ILE LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 226 PRO GLY GLY SER LEU ARG LEU SER CYS SER THR SER GLY SEQRES 3 B 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 226 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 226 ASN LYS PRO LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 B 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 226 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 226 ASP SER ALA THR TYR TYR CYS VAL ARG ASP ILE TYR SER SEQRES 9 B 226 PHE GLY SER ARG ASP GLY MET ASP TYR TRP GLY GLN GLY SEQRES 10 B 226 THR SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SEQRES 11 B 226 SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR SEQRES 12 B 226 ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR SEQRES 13 B 226 PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER SEQRES 14 B 226 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 B 226 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SEQRES 16 B 226 SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL SEQRES 17 B 226 ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE SEQRES 18 B 226 VAL PRO ARG ASP CYS SEQRES 1 C 219 ASP ILE VAL MET SER GLN PHE PRO SER SER LEU ALA VAL SEQRES 2 C 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 C 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS SER TYR LEU SEQRES 4 C 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN PHE PRO LYS LEU SEQRES 5 C 219 LEU ILE TYR TRP ALA ALA THR ARG GLU SER GLY VAL PRO SEQRES 6 C 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 C 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 C 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 C 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 C 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 C 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 C 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 C 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 C 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 C 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 D 226 GLU VAL ILE LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 226 PRO GLY GLY SER LEU ARG LEU SER CYS SER THR SER GLY SEQRES 3 D 226 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 D 226 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 D 226 ASN LYS PRO LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 D 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 D 226 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 D 226 ASP SER ALA THR TYR TYR CYS VAL ARG ASP ILE TYR SER SEQRES 9 D 226 PHE GLY SER ARG ASP GLY MET ASP TYR TRP GLY GLN GLY SEQRES 10 D 226 THR SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SEQRES 11 D 226 SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR SEQRES 12 D 226 ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR SEQRES 13 D 226 PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER SEQRES 14 D 226 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 D 226 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SEQRES 16 D 226 SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL SEQRES 17 D 226 ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE SEQRES 18 D 226 VAL PRO ARG ASP CYS
HET KDO B 301 15 HET KDO B 302 15 HET KDO B 303 15 HET GP4 B 304 15 HET GP1 B 305 16 HET KDO C 311 16 HET KDO C 312 15 HET KDO C 313 15 HET MG B 306 1 HET MG A 214 1 HET MG C 314 1 HET MG A 215 1 HET MG C 315 1
HETNAM KDO 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID HETNAM GP4 GLUCOSAMINE 4-PHOSPHATE HETNAM GP1 GLUCOSAMINE 1-PHOSPHATE HETNAM MG MAGNESIUM ION
FORMUL 5 KDO 6(C8 H14 O8) FORMUL 5 GP4 C6 H14 N O8 P FORMUL 5 GP1 C6 H14 N O8 P FORMUL 7 MG 5(MG 2+) FORMUL 12 HOH *767(H2 O)
HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 THR A 125 1 6 HELIX 3 3 LYS A 182 ARG A 187 1 6 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 ARG B 83 SER B 87 5 5 HELIX 6 6 PRO B 198 SER B 201 5 4 HELIX 7 7 GLN C 79 LEU C 83 5 5 HELIX 8 8 SER C 120 THR C 125 1 6 HELIX 9 9 LYS C 182 GLU C 186 1 5 HELIX 10 10 THR D 28 TYR D 32 5 5 HELIX 11 11 ARG D 83 SER D 87 5 5 HELIX 12 12 SER D 154 SER D 156 5 3 HELIX 13 13 PRO D 198 SER D 201 5 4
SHEET 1 A 4 MET A 4 PHE A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O LYS A 24 N SER A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 4 THR A 113 PHE A 117 0 SHEET 2 D 4 GLY A 128 PHE A 138 -1 O VAL A 132 N PHE A 117 SHEET 3 D 4 TYR A 172 THR A 181 -1 O TYR A 172 N PHE A 138 SHEET 4 D 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 E 4 SER A 152 ARG A 154 0 SHEET 2 E 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 E 4 TYR A 191 THR A 196 -1 O THR A 196 N ASN A 144 SHEET 4 E 4 ILE A 204 PHE A 208 -1 O ILE A 204 N ALA A 195 SHEET 1 F 4 ILE B 3 SER B 7 0 SHEET 2 F 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 F 4 ILE B 75 MET B 80 -1 O MET B 80 N LEU B 18 SHEET 4 F 4 PHE B 65 ASP B 70 -1 N THR B 66 O GLN B 79 SHEET 1 G 6 GLY B 10 VAL B 12 0 SHEET 2 G 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 G 6 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 105 SHEET 4 G 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 G 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 G 6 THR B 55 TYR B 57 -1 O GLU B 56 N PHE B 50 SHEET 1 H 4 GLY B 10 VAL B 12 0 SHEET 2 H 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 H 4 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 105 SHEET 4 H 4 TYR B 100E TRP B 101 -1 O TYR B 100E N ARG B 94 SHEET 1 I 4 SER B 118 LEU B 122 0 SHEET 2 I 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 I 4 LEU B 172 PRO B 182 -1 O VAL B 181 N VAL B 134 SHEET 4 I 4 VAL B 161 THR B 163 -1 N HIS B 162 O SER B 178 SHEET 1 J 4 SER B 118 LEU B 122 0 SHEET 2 J 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 J 4 LEU B 172 PRO B 182 -1 O VAL B 181 N VAL B 134 SHEET 4 J 4 VAL B 167 GLN B 169 -1 N GLN B 169 O LEU B 172 SHEET 1 K 3 THR B 149 THR B 151 0 SHEET 2 K 3 THR B 192 HIS B 197 -1 O ASN B 194 N THR B 151 SHEET 3 K 3 THR B 202 LYS B 207 -1 O VAL B 204 N VAL B 195 SHEET 1 L 4 MET C 4 PHE C 7 0 SHEET 2 L 4 VAL C 19 SER C 25 -1 O LYS C 24 N SER C 5 SHEET 3 L 4 ASP C 70 ILE C 75 -1 O PHE C 71 N CYS C 23 SHEET 4 L 4 PHE C 62 SER C 67 -1 N THR C 63 O THR C 74 SHEET 1 M 6 SER C 10 SER C 14 0 SHEET 2 M 6 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 3 M 6 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 M 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 M 6 LYS C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 M 6 THR C 53 ARG C 54 -1 O THR C 53 N TYR C 49 SHEET 1 N 4 SER C 10 SER C 14 0 SHEET 2 N 4 THR C 101 LYS C 106 1 O GLU C 104 N LEU C 11 SHEET 3 N 4 ALA C 84 GLN C 90 -1 N ALA C 84 O LEU C 103 SHEET 4 N 4 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 90 SHEET 1 O 4 THR C 113 PHE C 117 0 SHEET 2 O 4 GLY C 128 PHE C 138 -1 O VAL C 132 N PHE C 117 SHEET 3 O 4 TYR C 172 THR C 181 -1 O MET C 174 N LEU C 135 SHEET 4 O 4 VAL C 158 TRP C 162 -1 N LEU C 159 O THR C 177 SHEET 1 P 4 SER C 152 ARG C 154 0 SHEET 2 P 4 ILE C 143 ILE C 149 -1 N TRP C 147 O ARG C 154 SHEET 3 P 4 TYR C 191 HIS C 197 -1 O THR C 196 N ASN C 144 SHEET 4 P 4 ILE C 204 PHE C 208 -1 O ILE C 204 N ALA C 195 SHEET 1 Q 4 ILE D 3 SER D 7 0 SHEET 2 Q 4 LEU D 18 SER D 25 -1 O SER D 25 N ILE D 3 SHEET 3 Q 4 ILE D 75 MET D 80 -1 O MET D 80 N LEU D 18 SHEET 4 Q 4 PHE D 65 ASP D 70 -1 N SER D 68 O TYR D 77 SHEET 1 R 6 GLY D 10 VAL D 12 0 SHEET 2 R 6 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 R 6 ALA D 88 ARG D 94 -1 N TYR D 90 O THR D 105 SHEET 4 R 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 R 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 R 6 THR D 55 TYR D 57 -1 O GLU D 56 N PHE D 50 SHEET 1 S 4 GLY D 10 VAL D 12 0 SHEET 2 S 4 THR D 105 VAL D 109 1 O THR D 108 N VAL D 12 SHEET 3 S 4 ALA D 88 ARG D 94 -1 N TYR D 90 O THR D 105 SHEET 4 S 4 TYR D 100E TRP D 101 -1 O TYR D 100E N ARG D 94 SHEET 1 T 4 SER D 118 LEU D 122 0 SHEET 2 T 4 VAL D 134 TYR D 143 -1 O LEU D 139 N TYR D 120 SHEET 3 T 4 LEU D 172 VAL D 181 -1 O VAL D 181 N VAL D 134 SHEET 4 T 4 VAL D 161 THR D 163 -1 N HIS D 162 O SER D 178 SHEET 1 U 4 SER D 118 LEU D 122 0 SHEET 2 U 4 VAL D 134 TYR D 143 -1 O LEU D 139 N TYR D 120 SHEET 3 U 4 LEU D 172 VAL D 181 -1 O VAL D 181 N VAL D 134 SHEET 4 U 4 VAL D 167 GLN D 169 -1 N GLN D 169 O LEU D 172 SHEET 1 V 3 THR D 149 TRP D 152 0 SHEET 2 V 3 THR D 192 HIS D 197 -1 O ASN D 194 N THR D 151 SHEET 3 V 3 THR D 202 LYS D 207 -1 O VAL D 204 N VAL D 195
SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.07 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.04 SSBOND 3 CYS A 213 CYS B 213 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 5 CYS B 138 CYS B 193 1555 1555 2.04 SSBOND 6 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 7 CYS C 133 CYS C 193 1555 1555 2.04 SSBOND 8 CYS C 213 CYS D 213 1555 1555 2.04 SSBOND 9 CYS D 22 CYS D 92 1555 1555 2.01 SSBOND 10 CYS D 138 CYS D 193 1555 1555 2.04
LINK O4 KDO C 311 C2 KDO C 312 1555 1555 1.48 LINK O4 KDO C 312 C2 KDO C 313 1555 1555 1.47 LINK C2 KDO B 301 O5A GP4 B 304 1555 1555 1.46 LINK O4 KDO B 301 C2 KDO B 302 1555 1555 1.46 LINK O4 KDO B 302 C2 KDO B 303 1555 1555 1.48 LINK C1A GP4 B 304 O5B GP1 B 305 1555 1555 1.44 LINK MG MG A 214 O HOH B 312 1555 1555 2.92 LINK MG MG A 214 N PHE A 97 1555 1555 3.11 LINK MG MG A 215 O SER A 22 1555 1555 2.85 LINK MG MG A 215 OG1 THR A 101 1555 1555 2.76 LINK MG MG A 215 NE2 GLN A 6 1555 1555 2.87 LINK MG MG B 306 O HOH B 377 1555 1555 2.14 LINK MG MG B 306 O HOH B 376 1555 1555 2.05 LINK MG MG B 306 O HOH B 378 1555 1555 2.10 LINK MG MG B 306 OE2 GLU B 56 1555 1555 2.15 LINK MG MG B 306 O HOH B 379 1555 1555 1.98 LINK MG MG C 314 O HOH D 344 1555 1555 2.72 LINK MG MG C 314 N PHE C 97 1555 1555 3.09 LINK MG MG C 314 N TRP D 47 1555 1555 3.14 LINK MG MG C 314 O HOH C 397 1555 1555 2.69 LINK MG MG C 315 O SER C 22 1555 1555 2.91 LINK MG MG C 315 NE2 GLN C 6 1555 1555 2.87 LINK MG MG C 315 OG1 THR C 101 1555 1555 2.72 LINK MG MG B 306 OE2 GLU D 56 1555 2675 2.15
CISPEP 1 PHE A 7 PRO A 8 0 -0.34 CISPEP 2 TYR A 139 PRO A 140 0 0.09 CISPEP 3 PHE B 144 PRO B 145 0 -0.21 CISPEP 4 GLU B 146 PRO B 147 0 0.16 CISPEP 5 TRP B 186 PRO B 187 0 0.21 CISPEP 6 PHE C 7 PRO C 8 0 -0.23 CISPEP 7 TYR C 139 PRO C 140 0 0.20 CISPEP 8 PHE D 144 PRO D 145 0 -0.66 CISPEP 9 GLU D 146 PRO D 147 0 0.24 CISPEP 10 TRP D 186 PRO D 187 0 0.31
SITE 1 AC1 9 ASN A 30A ARG A 30C PRO B 14 PHE B 97 SITE 2 AC1 9 KDO B 302 GP4 B 304 GP1 B 305 HOH B 340 SITE 3 AC1 9 HOH B 526 SITE 1 AC2 13 TYR B 33 LYS B 52D PHE B 97 KDO B 301 SITE 2 AC2 13 KDO B 303 GP1 B 305 HOH B 309A HOH B 310A SITE 3 AC2 13 HOH B 320 HOH B 340 HOH B 354 HOH B 361 SITE 4 AC2 13 HOH B 475 SITE 1 AC3 12 SER A 91 TYR A 92 ARG A 95 HOH A 216A SITE 2 AC3 12 TYR B 33 ARG B 52 ILE B 96 KDO B 302 SITE 3 AC3 12 HOH B 307A HOH B 308A HOH B 419 HOH B 475 SITE 1 AC4 5 SER B 111 KDO B 301 GP1 B 305 HOH B 375 SITE 2 AC4 5 HOH B 415 SITE 1 AC5 9 LYS B 52D SER B 111 KDO B 301 KDO B 302 SITE 2 AC5 9 GP4 B 304 HOH B 320 HOH B 344 HOH B 361 SITE 3 AC5 9 HOH B 439 SITE 1 AC6 5 ASN C 30A ARG C 30C KDO C 312 KDO C 313 SITE 2 AC6 5 PHE D 97 SITE 1 AC7 8 HOH B 423 KDO C 311 KDO C 313 HOH C 379 SITE 2 AC7 8 TYR D 33 LYS D 52D PHE D 97 HOH D 214B SITE 1 AC8 12 SER C 91 TYR C 92 ARG C 95 KDO C 311 SITE 2 AC8 12 KDO C 312 HOH C 316B HOH C 317B HOH C 318B SITE 3 AC8 12 HOH C 378 TYR D 33 ARG D 52 ILE D 96 SITE 1 AC9 6 GLU B 56 HOH B 376 HOH B 377 HOH B 378 SITE 2 AC9 6 HOH B 379 GLU D 56 SITE 1 BC1 4 PHE A 97 GLU B 46 TRP B 47 HOH B 312 SITE 1 BC2 6 THR C 96 PHE C 97 HOH C 397 GLU D 46 SITE 2 BC2 6 TRP D 47 HOH D 344 SITE 1 BC3 5 GLN A 6 MET A 21 SER A 22 TRP A 35 SITE 2 BC3 5 THR A 101 SITE 1 BC4 4 GLN C 6 MET C 21 SER C 22 THR C 101
CRYST1 71.200 113.900 133.900 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014045 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008780 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007468 0.00000