10 20 30 40 50 60 70 80 1Q9P - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 25-AUG-03 1Q9P
TITLE SOLUTION STRUCTURE OF THE MATURE HIV-1 PROTEASE MONOMER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RETROPEPSIN; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HIV-1 PROTEASE, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.ISHIMA,D.A.TORCHIA,S.M.LYNCH,A.M.GRONENBORN,J.M.LOUIS
REVDAT 2 11-MAR-08 1Q9P 1 SOURCE DBREF SEQADV VERSN REVDAT 1 02-MAR-04 1Q9P 0
JRNL AUTH R.ISHIMA,D.A.TORCHIA,S.M.LYNCH,A.M.GRONENBORN, JRNL AUTH 2 J.M.LOUIS JRNL TITL SOLUTION STRUCTURE OF THE MATURE HIV-1 PROTEASE JRNL TITL 2 MONOMER: INSIGHT INTO THE TERTIARY FOLD AND JRNL TITL 3 STABILITY OF A PRECURSOR JRNL REF J.BIOL.CHEM. V. 278 43311 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12933791 JRNL DOI 10.1074/JBC.M307549200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 1.0.6 REMARK 3 AUTHORS : C.D.SCHWIETERS, J.J.KUSZEWSKI, N.TJANDRA, AND REMARK 3 G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 862 RESTRAINTS, 752 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 47 DIHEDRAL ANGLE RESTRAINTS,30 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS, 63 DIPOLAR COUPLING CONSTRAINTS.
REMARK 4 REMARK 4 1Q9P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020092.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM HIV-1 PROTEASE U-15N, REMARK 210 13C, 20MM PHOSPHATE BUFFER, REMARK 210 95% H2O, 5%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE, X-PLOR REMARK 210 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 140.63 55.87 REMARK 500 1 PRO A 9 151.47 -42.36 REMARK 500 1 LEU A 10 -166.54 -59.82 REMARK 500 1 GLU A 34 154.72 -48.48 REMARK 500 1 PHE A 53 54.15 168.26 REMARK 500 1 GLN A 61 51.48 -144.63 REMARK 500 1 VAL A 82 -142.73 -126.91 REMARK 500 2 GLU A 34 152.21 -49.76 REMARK 500 2 MET A 36 110.00 -27.16 REMARK 500 2 LEU A 38 154.57 -32.10 REMARK 500 2 PRO A 39 -152.68 -57.69 REMARK 500 2 PHE A 53 91.62 -54.74 REMARK 500 2 ASP A 60 -149.80 -113.25 REMARK 500 2 GLN A 61 22.73 35.50 REMARK 500 2 ALA A 67 79.32 -20.41 REMARK 500 2 VAL A 82 -154.80 49.80 REMARK 500 2 ILE A 93 -39.50 61.66 REMARK 500 3 ALA A 28 -137.67 38.15 REMARK 500 3 MET A 36 100.02 39.68 REMARK 500 3 SER A 37 17.78 -146.84 REMARK 500 3 LEU A 38 141.81 179.14 REMARK 500 3 THR A 80 139.93 -39.74 REMARK 500 3 VAL A 82 -159.17 -127.94 REMARK 500 4 LYS A 7 -73.12 -102.95 REMARK 500 4 PRO A 9 -178.04 -44.83 REMARK 500 4 MET A 36 -103.94 -131.13 REMARK 500 4 PHE A 53 34.52 -172.68 REMARK 500 4 GLN A 61 54.91 -141.73 REMARK 500 4 THR A 80 100.96 -38.37 REMARK 500 4 PRO A 81 -4.59 -55.28 REMARK 500 5 GLU A 34 -74.91 -69.04 REMARK 500 5 SER A 37 40.22 163.90 REMARK 500 5 GLN A 61 63.81 -152.92 REMARK 500 5 ALA A 67 -59.75 62.15 REMARK 500 5 PRO A 79 20.05 -70.84 REMARK 500 5 VAL A 82 -150.04 29.97 REMARK 500 6 GLU A 35 -0.10 -51.40 REMARK 500 6 SER A 37 123.51 162.87 REMARK 500 6 LEU A 38 62.15 27.87 REMARK 500 6 ARG A 41 96.09 54.38 REMARK 500 6 PHE A 53 105.19 -48.37 REMARK 500 6 ALA A 67 -58.51 64.49 REMARK 500 6 VAL A 82 -158.17 38.62 REMARK 500 7 MET A 36 136.04 -172.73 REMARK 500 7 SER A 37 -127.33 50.93 REMARK 500 7 LEU A 38 112.99 59.13 REMARK 500 7 PRO A 39 167.49 -44.85 REMARK 500 7 GLN A 61 78.90 -153.76 REMARK 500 7 VAL A 82 -149.40 32.78 REMARK 500 7 ILE A 93 -75.60 -95.37 REMARK 500 8 MET A 36 0.40 178.57 REMARK 500 8 SER A 37 -147.60 -164.94 REMARK 500 8 LEU A 38 66.97 65.14 REMARK 500 8 ILE A 66 -155.59 -95.75 REMARK 500 8 ALA A 67 72.11 -56.93 REMARK 500 8 PRO A 79 27.07 -73.00 REMARK 500 8 VAL A 82 -135.69 -146.52 REMARK 500 8 GLN A 92 -173.51 -63.78 REMARK 500 9 THR A 4 54.69 37.08 REMARK 500 9 TRP A 6 -52.52 -133.70 REMARK 500 9 SER A 37 88.02 -32.58 REMARK 500 9 PRO A 39 -173.57 -47.35 REMARK 500 9 GLN A 61 69.81 -150.82 REMARK 500 9 THR A 80 123.64 -39.99 REMARK 500 10 PRO A 9 -17.00 -37.58 REMARK 500 10 THR A 26 -114.38 -78.53 REMARK 500 10 MET A 36 -75.81 -139.76 REMARK 500 10 SER A 37 105.18 179.86 REMARK 500 10 PRO A 39 154.55 -48.03 REMARK 500 10 ALA A 67 -61.08 63.48 REMARK 500 10 VAL A 82 178.01 65.88 REMARK 500 10 ILE A 93 -3.59 -170.66 REMARK 500 11 MET A 36 -167.03 175.23 REMARK 500 11 SER A 37 -148.64 46.09 REMARK 500 11 LEU A 38 148.11 -26.83 REMARK 500 11 ARG A 41 -121.28 -59.74 REMARK 500 11 TRP A 42 88.89 -175.86 REMARK 500 11 PRO A 44 101.13 -46.08 REMARK 500 11 PHE A 53 37.71 177.67 REMARK 500 11 PRO A 81 26.24 -79.65 REMARK 500 11 ARG A 87 -36.10 -38.92 REMARK 500 11 LEU A 89 -40.87 59.25 REMARK 500 12 ALA A 28 102.83 47.95 REMARK 500 12 SER A 37 101.73 -53.50 REMARK 500 12 PRO A 39 -122.96 -36.25 REMARK 500 12 ALA A 67 -60.68 62.87 REMARK 500 12 VAL A 82 -172.74 47.89 REMARK 500 12 ILE A 93 -23.98 -173.55 REMARK 500 13 THR A 26 56.67 -90.37 REMARK 500 13 ALA A 28 -32.14 -149.67 REMARK 500 13 MET A 36 -75.09 -143.83 REMARK 500 13 SER A 37 107.04 -176.22 REMARK 500 13 ALA A 67 -64.28 62.42 REMARK 500 13 THR A 80 152.21 -48.89 REMARK 500 13 VAL A 82 -151.92 32.86 REMARK 500 14 MET A 36 -69.30 -153.59 REMARK 500 14 SER A 37 81.87 -173.53 REMARK 500 14 PRO A 39 -161.44 -50.21 REMARK 500 14 PHE A 53 56.94 92.52 REMARK 500 14 ALA A 67 -55.98 66.73 REMARK 500 14 THR A 80 140.76 -39.70 REMARK 500 14 VAL A 82 -149.30 -128.41 REMARK 500 14 LEU A 89 -40.73 58.75 REMARK 500 15 LYS A 7 -99.46 62.18 REMARK 500 15 ASP A 25 6.25 -55.97 REMARK 500 15 THR A 26 61.02 -65.44 REMARK 500 15 ALA A 28 129.72 176.67 REMARK 500 15 MET A 36 -75.50 -152.31 REMARK 500 15 SER A 37 119.03 -165.88 REMARK 500 15 ILE A 66 -156.97 -86.45 REMARK 500 15 ALA A 67 71.61 -57.18 REMARK 500 15 PRO A 81 155.67 -47.60 REMARK 500 15 VAL A 82 -163.26 46.55 REMARK 500 15 ILE A 93 64.63 -159.03 REMARK 500 16 ASP A 29 -39.46 70.90 REMARK 500 16 MET A 36 -65.53 176.80 REMARK 500 16 SER A 37 -149.12 -97.71 REMARK 500 16 LEU A 38 71.01 53.51 REMARK 500 16 PRO A 39 -100.46 -78.05 REMARK 500 16 ARG A 41 102.67 72.95 REMARK 500 16 PRO A 79 -107.50 -40.33 REMARK 500 16 PRO A 81 172.87 -46.97 REMARK 500 16 VAL A 82 -162.12 47.35 REMARK 500 16 ILE A 93 -10.43 -174.32 REMARK 500 17 GLN A 2 97.67 43.65 REMARK 500 17 PRO A 9 -12.90 -49.86 REMARK 500 17 MET A 36 12.23 -146.99 REMARK 500 17 SER A 37 60.03 96.77 REMARK 500 17 TRP A 42 168.76 46.55 REMARK 500 17 ALA A 67 -68.39 61.28 REMARK 500 17 PRO A 81 35.48 -80.01 REMARK 500 17 ILE A 93 -23.49 -171.22 REMARK 500 18 SER A 37 89.11 88.77 REMARK 500 18 LEU A 38 53.04 -144.71 REMARK 500 18 ALA A 67 -63.01 63.97 REMARK 500 18 THR A 80 109.58 -39.51 REMARK 500 18 VAL A 82 -149.02 35.69 REMARK 500 18 ILE A 93 6.66 -159.25 REMARK 500 19 ASP A 25 104.40 13.34 REMARK 500 19 THR A 26 -82.31 -92.00 REMARK 500 19 SER A 37 86.17 89.77 REMARK 500 19 LEU A 38 60.11 -162.04 REMARK 500 19 PHE A 53 77.04 163.76 REMARK 500 19 ALA A 67 -68.04 61.81 REMARK 500 19 PRO A 81 31.61 -78.53 REMARK 500 20 LYS A 7 -72.89 -99.25 REMARK 500 20 PRO A 9 95.00 -43.53 REMARK 500 20 PRO A 39 154.70 -48.44 REMARK 500 20 ALA A 67 -62.82 62.42 REMARK 500 20 THR A 80 145.80 -39.61 REMARK 500 20 VAL A 82 -151.13 29.43 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1Q9P A 1 95 UNP P04587 POL_HV1B5 501 595
SEQADV 1Q9P LYS A 7 UNP P04587 GLN 507 ENGINEERED SEQADV 1Q9P ILE A 33 UNP P04587 LEU 533 ENGINEERED SEQADV 1Q9P ILE A 63 UNP P04587 LEU 563 ENGINEERED SEQADV 1Q9P ALA A 67 UNP P04587 CYS 567 ENGINEERED SEQADV 1Q9P ALA A 95 UNP P04587 CYS 595 ENGINEERED
SEQRES 1 A 95 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 95 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 95 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 A 95 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 95 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 A 95 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 95 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 95 GLN ILE GLY ALA
HELIX 1 1 GLY A 86 THR A 91 1 6
SHEET 1 A 8 LYS A 43 ILE A 47 0 SHEET 2 A 8 ILE A 54 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 A 8 HIS A 69 VAL A 77 -1 O ALA A 71 N ILE A 64 SHEET 4 A 8 VAL A 32 ILE A 33 1 N ILE A 33 O LEU A 76 SHEET 5 A 8 ASN A 83 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 A 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 A 8 THR A 12 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 A 8 ILE A 54 ILE A 66 -1 O GLU A 65 N LYS A 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000