10 20 30 40 50 60 70 80 1Q6O - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 13-AUG-03 1Q6O
TITLE STRUCTURE OF 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE TITLE 2 WITH BOUND L-GULONAET 6-PHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROBABLE HEXULOSE-6-PHOSPHATE SYNTHASE; HUMPS; D- COMPND 5 ARABINO 3-HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE; COMPND 6 EC: 4.1.2.-; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS BETA BARREL, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.L.WISE,W.S.YEW,J.A.GERLT,I.RAYMENT
REVDAT 2 24-FEB-09 1Q6O 1 VERSN REVDAT 1 28-OCT-03 1Q6O 0
JRNL AUTH E.L.WISE,W.S.YEW,J.A.GERLT,I.RAYMENT JRNL TITL STRUCTURAL EVIDENCE FOR A 1,2-ENEDIOLATE JRNL TITL 2 INTERMEDIATE IN THE REACTION CATALYZED BY JRNL TITL 3 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE, A JRNL TITL 4 MEMBER OF THE OROTIDINE 5'-MONOPHOSPHATE JRNL TITL 5 DECARBOXYLASE SUPRAFAMILY JRNL REF BIOCHEMISTRY V. 42 12133 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14567674 JRNL DOI 10.1021/BI0348819
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 124961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 347 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3386 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3176 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4599 ; 1.511 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7343 ; 2.070 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.906 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3754 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 720 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3778 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1987 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 364 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.293 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 1.646 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3397 ; 2.452 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1269 ; 2.931 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1202 ; 4.279 ; 6.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3386 ; 1.401 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 563 ; 3.791 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3331 ; 3.617 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1Q6O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB019983.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0247 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.202 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% MEPEG 2000, 50 MM BTP PH 7.0, 5 REMARK 280 MM MGCL2, MICROBATCH, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.24000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 216 REMARK 465 MET B 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 TYR B 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 7449 O HOH A 7532 1.93 REMARK 500 O HOH B 9339 O HOH B 9543 1.94 REMARK 500 O HOH A 7414 O HOH A 7528 1.95 REMARK 500 O HOH A 7499 O HOH A 7564 2.03 REMARK 500 O HOH B 9468 O HOH B 9542 2.07 REMARK 500 O HOH B 9468 O HOH B 9581 2.10 REMARK 500 O HOH A 7310 O HOH A 7461 2.15 REMARK 500 CD1 ILE B 37 O HOH B 9409 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ILE B 37 CG1 - CB - CG2 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 23.39 81.04 REMARK 500 ASN B 80 22.50 81.43 REMARK 500 TYR B 116 51.95 -97.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B9387 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A7565 DISTANCE = 5.18 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A7300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD2 REMARK 620 2 LG6 A7301 O3 91.3 REMARK 620 3 GLU A 33 OE2 99.6 168.9 REMARK 620 4 LG6 A7301 O4 165.8 74.6 94.6 REMARK 620 5 HOH A7381 O 91.2 88.9 93.3 87.1 REMARK 620 6 HOH A7382 O 93.8 89.1 87.7 87.7 174.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B9300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B9407 O REMARK 620 2 LG6 B9301 O3 89.5 REMARK 620 3 GLU B 33 OE2 87.4 170.1 REMARK 620 4 HOH B9406 O 175.1 90.2 92.0 REMARK 620 5 ASP B 62 OD2 93.2 91.0 98.5 91.7 REMARK 620 6 LG6 B9301 O4 86.9 74.0 96.5 88.3 165.0 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 7300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 9300 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LG6 A 7301 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LG6 B 9301
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KW1 RELATED DB: PDB REMARK 900 IDENTICAL TO 1KW1 BUT TO HIGHER RESOLUTION REMARK 900 RELATED ID: 1Q6L RELATED DB: PDB REMARK 900 RELATED ID: 1Q6Q RELATED DB: PDB REMARK 900 RELATED ID: 1Q6R RELATED DB: PDB
DBREF 1Q6O A 1 216 UNP P39304 SGAH_ECOLI 1 216 DBREF 1Q6O B 1 216 UNP P39304 SGAH_ECOLI 1 216
SEQRES 1 A 216 MET SER LEU PRO MET LEU GLN VAL ALA LEU ASP ASN GLN SEQRES 2 A 216 THR MET ASP SER ALA TYR GLU THR THR ARG LEU ILE ALA SEQRES 3 A 216 GLU GLU VAL ASP ILE ILE GLU VAL GLY THR ILE LEU CYS SEQRES 4 A 216 VAL GLY GLU GLY VAL ARG ALA VAL ARG ASP LEU LYS ALA SEQRES 5 A 216 LEU TYR PRO HIS LYS ILE VAL LEU ALA ASP ALA LYS ILE SEQRES 6 A 216 ALA ASP ALA GLY LYS ILE LEU SER ARG MET CYS PHE GLU SEQRES 7 A 216 ALA ASN ALA ASP TRP VAL THR VAL ILE CYS CYS ALA ASP SEQRES 8 A 216 ILE ASN THR ALA LYS GLY ALA LEU ASP VAL ALA LYS GLU SEQRES 9 A 216 PHE ASN GLY ASP VAL GLN ILE GLU LEU THR GLY TYR TRP SEQRES 10 A 216 THR TRP GLU GLN ALA GLN GLN TRP ARG ASP ALA GLY ILE SEQRES 11 A 216 GLY GLN VAL VAL TYR HIS ARG SER ARG ASP ALA GLN ALA SEQRES 12 A 216 ALA GLY VAL ALA TRP GLY GLU ALA ASP ILE THR ALA ILE SEQRES 13 A 216 LYS ARG LEU SER ASP MET GLY PHE LYS VAL THR VAL THR SEQRES 14 A 216 GLY GLY LEU ALA LEU GLU ASP LEU PRO LEU PHE LYS GLY SEQRES 15 A 216 ILE PRO ILE HIS VAL PHE ILE ALA GLY ARG SER ILE ARG SEQRES 16 A 216 ASP ALA ALA SER PRO VAL GLU ALA ALA ARG GLN PHE LYS SEQRES 17 A 216 ARG SER ILE ALA GLU LEU TRP GLY SEQRES 1 B 216 MET SER LEU PRO MET LEU GLN VAL ALA LEU ASP ASN GLN SEQRES 2 B 216 THR MET ASP SER ALA TYR GLU THR THR ARG LEU ILE ALA SEQRES 3 B 216 GLU GLU VAL ASP ILE ILE GLU VAL GLY THR ILE LEU CYS SEQRES 4 B 216 VAL GLY GLU GLY VAL ARG ALA VAL ARG ASP LEU LYS ALA SEQRES 5 B 216 LEU TYR PRO HIS LYS ILE VAL LEU ALA ASP ALA LYS ILE SEQRES 6 B 216 ALA ASP ALA GLY LYS ILE LEU SER ARG MET CYS PHE GLU SEQRES 7 B 216 ALA ASN ALA ASP TRP VAL THR VAL ILE CYS CYS ALA ASP SEQRES 8 B 216 ILE ASN THR ALA LYS GLY ALA LEU ASP VAL ALA LYS GLU SEQRES 9 B 216 PHE ASN GLY ASP VAL GLN ILE GLU LEU THR GLY TYR TRP SEQRES 10 B 216 THR TRP GLU GLN ALA GLN GLN TRP ARG ASP ALA GLY ILE SEQRES 11 B 216 GLY GLN VAL VAL TYR HIS ARG SER ARG ASP ALA GLN ALA SEQRES 12 B 216 ALA GLY VAL ALA TRP GLY GLU ALA ASP ILE THR ALA ILE SEQRES 13 B 216 LYS ARG LEU SER ASP MET GLY PHE LYS VAL THR VAL THR SEQRES 14 B 216 GLY GLY LEU ALA LEU GLU ASP LEU PRO LEU PHE LYS GLY SEQRES 15 B 216 ILE PRO ILE HIS VAL PHE ILE ALA GLY ARG SER ILE ARG SEQRES 16 B 216 ASP ALA ALA SER PRO VAL GLU ALA ALA ARG GLN PHE LYS SEQRES 17 B 216 ARG SER ILE ALA GLU LEU TRP GLY
HET MG A7300 1 HET MG B9300 1 HET LG6 A7301 17 HET LG6 B9301 17
HETNAM MG MAGNESIUM ION HETNAM LG6 L-GULURONIC ACID 6-PHOSPHATE
FORMUL 3 MG 2(MG 2+) FORMUL 5 LG6 2(C6 H13 O10 P) FORMUL 7 HOH *561(H2 O)
HELIX 1 1 THR A 14 ALA A 26 1 13 HELIX 2 2 GLU A 27 VAL A 29 5 3 HELIX 3 3 GLY A 35 GLY A 43 1 9 HELIX 4 4 VAL A 44 TYR A 54 1 11 HELIX 5 5 ALA A 68 ALA A 79 1 12 HELIX 6 6 ASP A 91 PHE A 105 1 15 HELIX 7 7 THR A 118 ALA A 128 1 11 HELIX 8 8 SER A 138 ALA A 144 1 7 HELIX 9 9 GLY A 149 MET A 162 1 14 HELIX 10 10 ALA A 173 LYS A 181 5 9 HELIX 11 11 GLY A 191 ASP A 196 1 6 HELIX 12 12 SER A 199 TRP A 215 1 17 HELIX 13 13 THR B 14 ALA B 26 1 13 HELIX 14 14 GLU B 27 VAL B 29 5 3 HELIX 15 15 GLY B 35 GLY B 43 1 9 HELIX 16 16 VAL B 44 TYR B 54 1 11 HELIX 17 17 ALA B 68 ALA B 79 1 12 HELIX 18 18 ASP B 91 PHE B 105 1 15 HELIX 19 19 THR B 118 ALA B 128 1 11 HELIX 20 20 SER B 138 ALA B 144 1 7 HELIX 21 21 GLY B 149 MET B 162 1 14 HELIX 22 22 ALA B 173 LYS B 181 5 9 HELIX 23 23 GLY B 191 ASP B 196 1 6 HELIX 24 24 SER B 199 TRP B 215 1 17
SHEET 1 A 9 MET A 5 LEU A 10 0 SHEET 2 A 9 ILE A 31 VAL A 34 1 O GLU A 33 N VAL A 8 SHEET 3 A 9 ILE A 58 ILE A 65 1 O LEU A 60 N VAL A 34 SHEET 4 A 9 TRP A 83 ILE A 87 1 O TRP A 83 N ALA A 61 SHEET 5 A 9 ASP A 108 LEU A 113 1 O GLU A 112 N VAL A 86 SHEET 6 A 9 GLN A 132 HIS A 136 1 O VAL A 134 N ILE A 111 SHEET 7 A 9 LYS A 165 THR A 169 1 O THR A 167 N TYR A 135 SHEET 8 A 9 VAL A 187 ALA A 190 1 O VAL A 187 N VAL A 168 SHEET 9 A 9 MET A 5 LEU A 10 1 N MET A 5 O PHE A 188 SHEET 1 B 9 MET B 5 LEU B 10 0 SHEET 2 B 9 ILE B 31 VAL B 34 1 O GLU B 33 N VAL B 8 SHEET 3 B 9 ILE B 58 ILE B 65 1 O LEU B 60 N VAL B 34 SHEET 4 B 9 TRP B 83 ILE B 87 1 O TRP B 83 N ALA B 61 SHEET 5 B 9 ASP B 108 LEU B 113 1 O GLU B 112 N VAL B 86 SHEET 6 B 9 GLN B 132 HIS B 136 1 O VAL B 134 N ILE B 111 SHEET 7 B 9 LYS B 165 THR B 169 1 O THR B 167 N TYR B 135 SHEET 8 B 9 VAL B 187 ALA B 190 1 O VAL B 187 N VAL B 168 SHEET 9 B 9 MET B 5 LEU B 10 1 N GLN B 7 O ALA B 190
LINK MG MG A7300 OD2 ASP A 62 1555 1555 2.02 LINK MG MG A7300 O3 LG6 A7301 1555 1555 2.11 LINK MG MG A7300 OE2 GLU A 33 1555 1555 2.02 LINK MG MG A7300 O4 LG6 A7301 1555 1555 2.20 LINK MG MG A7300 O HOH A7381 1555 1555 2.10 LINK MG MG A7300 O HOH A7382 1555 1555 2.08 LINK MG MG B9300 O HOH B9407 1555 1555 2.09 LINK MG MG B9300 O3 LG6 B9301 1555 1555 2.10 LINK MG MG B9300 OE2 GLU B 33 1555 1555 2.04 LINK MG MG B9300 O HOH B9406 1555 1555 2.07 LINK MG MG B9300 OD2 ASP B 62 1555 1555 2.00 LINK MG MG B9300 O4 LG6 B9301 1555 1555 2.18
SITE 1 AC1 5 GLU A 33 ASP A 62 LG6 A7301 HOH A7381 SITE 2 AC1 5 HOH A7382 SITE 1 AC2 5 GLU B 33 ASP B 62 LG6 B9301 HOH B9406 SITE 2 AC2 5 HOH B9407 SITE 1 AC3 23 ALA A 9 ASP A 11 GLU A 33 THR A 36 SITE 2 AC3 23 ASP A 62 LYS A 64 HIS A 136 ARG A 139 SITE 3 AC3 23 THR A 169 GLY A 171 GLY A 191 ARG A 192 SITE 4 AC3 23 MG A7300 HOH A7303 HOH A7308 HOH A7313 SITE 5 AC3 23 HOH A7327 HOH A7331 HOH A7381 HOH A7382 SITE 6 AC3 23 HOH A7458 HOH A7516 ASP B 67 SITE 1 AC4 22 ASP A 67 ALA B 9 ASP B 11 GLU B 33 SITE 2 AC4 22 THR B 36 ASP B 62 LYS B 64 HIS B 136 SITE 3 AC4 22 THR B 169 GLY B 171 GLY B 191 ARG B 192 SITE 4 AC4 22 MG B9300 HOH B9303 HOH B9314 HOH B9316 SITE 5 AC4 22 HOH B9389 HOH B9406 HOH B9407 HOH B9408 SITE 6 AC4 22 HOH B9409 HOH B9497
CRYST1 123.240 41.775 90.958 90.00 97.15 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008114 0.000000 0.001018 0.00000
SCALE2 0.000000 0.023938 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011080 0.00000