10 20 30 40 50 60 70 80 1Q5G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CONTRACTILE PROTEIN 07-AUG-03 1Q5G
TITLE STRUCTURE OF THE NUCLEOTIDE-FREE MYOSIN II MOTOR DOMAIN TITLE 2 FROM DICTYOSTELIUM DISCOIDEUM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN II HEAVY CHAIN, NON MUSCLE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 GENE: MHCA; SOURCE 5 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 6 EXPRESSION_SYSTEM_COMMON: SLIME MOLD; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AX3-ORF+
KEYWDS STRUCTURE OF THE NUCLEOTIDE-FREE MYOSIN II MOTOR DOMAIN KEYWDS 2 FROM DICTYOSTELIUM DISCOIDEUM
EXPDTA THEORETICAL MODEL
AUTHOR T.F.REUBOLD,S.ESCHENBURG,A.BECKER,F.J.KULL,D.J.MANSTEIN
REVDAT 2 23-AUG-05 1Q5G 1 REMARK REVDAT 1 30-SEP-03 1Q5G 0
JRNL AUTH T.F.REUBOLD,S.ESCHENBURG,A.BECKER,F.J.KULL, JRNL AUTH 2 D.J.MANSTEIN JRNL TITL A STRUCTURAL MODEL FOR ACTIN-INDUCED NUCLEOTIDE JRNL TITL 2 RELEASE IN MYOSIN JRNL REF NAT.STRUCT.BIOL. V. 10 826 2003 JRNL REFN ASTM NSBIEW US ISSN 1072-8368
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COORDINATES WERE DERIVED BASED REMARK 3 ON ELECTRON DENSITY FROM A CRYSTAL OF THE GTPASE DOMAIN OF REMARK 3 DYNAMIN1 FROM RATTUS NORVEGICUS FUSED TO THE MYOSIN II MOTOR REMARK 3 DOMAIN FROM D. DISCOIDEUM.
REMARK 4 REMARK 4 1Q5G COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-2003. REMARK 100 THE RCSB ID CODE IS RCSB019939.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 486 SD MET A 486 CE 0.119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 96 N - CA - C ANGL. DEV. =-10.2 DEGREES REMARK 500 SER A 119 N - CA - C ANGL. DEV. =-12.5 DEGREES REMARK 500 LEU A 123 N - CA - C ANGL. DEV. =-11.4 DEGREES REMARK 500 LEU A 175 N - CA - C ANGL. DEV. =-10.6 DEGREES REMARK 500 ASN A 203 N - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 ILE A 245 N - CA - C ANGL. DEV. =-14.1 DEGREES REMARK 500 LEU A 262 N - CA - C ANGL. DEV. = 10.4 DEGREES REMARK 500 GLY A 335 N - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 GLY A 401 N - CA - C ANGL. DEV. =-12.1 DEGREES REMARK 500 ILE A 450 N - CA - C ANGL. DEV. =-13.1 DEGREES REMARK 500 GLU A 560 N - CA - C ANGL. DEV. =-11.9 DEGREES REMARK 500 PHE A 563 N - CA - C ANGL. DEV. = 11.0 DEGREES REMARK 500 ASN A 649 N - CA - C ANGL. DEV. =-11.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 -97.62 86.29 REMARK 500 VAL A 29 146.37 78.50 REMARK 500 ALA A 205 -66.44 102.10 REMARK 500 SER A 619 -107.30 59.96 REMARK 500 ARG A 620 -61.85 118.65 REMARK 500 ALA A 621 -97.68 173.01 REMARK 500 LYS A 622 -137.18 162.03
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AKA RELATED DB: PDB REMARK 900 THIS ENTRY, 1Q5G, CONTAINS THE COORDINATES OF THE N- REMARK 900 TERMINAL PART OF A FUSION PROTEIN CONSISTING OF THE MOTOR REMARK 900 DOMAIN OF MYOSIN II FROM DICTYOSTELIUM DISCOIDEUM AND THE REMARK 900 GTPASE DOMAIN OF DYNAMIN 1 FROM RATTUS NORVEGICUS. THE REMARK 900 COORDINATES OF THE ENTIRE FUSION PROTEIN AND THE REMARK 900 CORRESPONDING STRUCTURE FACTORS ARE DEPOSITED UNDER PDB ID REMARK 900 2AKA.
REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE SEQUENCE PUBLISHED REMARK 999 BY JAMES SPUDICH, WAS FOUND NOT TO BE CORRECT. REMARK 999 THE GENE WAS SEQUENCED IN THE LAB OF DR. MANSTEIN REMARK 999 AND IT WAS SHOWN THAT RESIDUE 249 IS NOT ASN BUT SER AND REMARK 999 RESIDUE 312 IS NOT TYR BUT CYS. THIS RESULT WAS CONFIRMED REMARK 999 BY RESEQUENCING SPUDICH'S ORIGINAL VECTORS. REMARK 999 REMARK 999 RESIDUES 765-771 ARE PART OF A SYNTHETIC LINKER REMARK 999 CONNECTING THE PROTEIN WITH ANOTHER MACROMOLECULE.
DBREF 1Q5G A 1 768 UNP P08799 MYS2_DICDI 2 769
SEQADV 1Q5G SER A 248 UNP P08799 ASN 249 SEE REMARK 999 SEQADV 1Q5G CYS A 311 UNP P08799 TYR 312 SEE REMARK 999 SEQADV 1Q5G THR A 765 UNP P08799 ILE 766 SEE REMARK 999 SEQADV 1Q5G ARG A 766 UNP P08799 LYS 767 SEE REMARK 999 SEQADV 1Q5G LEU A 767 UNP P08799 ALA 768 SEE REMARK 999 SEQADV 1Q5G VAL A 768 UNP P08799 ILE 769 SEE REMARK 999 SEQADV 1Q5G PRO A 769 UNP P08799 SEE REMARK 999 SEQADV 1Q5G ARG A 770 UNP P08799 SEE REMARK 999
SEQRES 1 A 770 ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS TYR SEQRES 2 A 770 LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS LEU SEQRES 3 A 770 THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO ASP SEQRES 4 A 770 PRO LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE VAL SEQRES 5 A 770 SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL ASP SEQRES 6 A 770 GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN GLN SEQRES 7 A 770 ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SER SEQRES 8 A 770 GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS ASN SEQRES 9 A 770 LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR TYR SEQRES 10 A 770 SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS ARG SEQRES 11 A 770 ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE LYS SEQRES 12 A 770 GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE ALA SEQRES 13 A 770 ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP ARG SEQRES 14 A 770 GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY ALA SEQRES 15 A 770 GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR LEU SEQRES 16 A 770 ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER GLY SEQRES 17 A 770 VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE LEU SEQRES 18 A 770 GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN ASN SEQRES 19 A 770 SER SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE ASN SEQRES 20 A 770 SER ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER TYR SEQRES 21 A 770 LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU THR SEQRES 22 A 770 GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA GLY SEQRES 23 A 770 ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA GLY SEQRES 24 A 770 PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS VAL SEQRES 25 A 770 ASP ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS ILE SEQRES 26 A 770 THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN GLU SEQRES 27 A 770 GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE LEU SEQRES 28 A 770 HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY GLU SEQRES 29 A 770 GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA ALA SEQRES 30 A 770 SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU LYS SEQRES 31 A 770 ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP LEU SEQRES 32 A 770 VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SER SEQRES 33 A 770 ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU PHE SEQRES 34 A 770 LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS GLN SEQRES 35 A 770 GLU ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE SER SEQRES 36 A 770 GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN LEU SEQRES 37 A 770 CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE PHE SEQRES 38 A 770 ASN HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR LEU SEQRES 39 A 770 LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY LEU SEQRES 40 A 770 ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG GLN SEQRES 41 A 770 PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER VAL SEQRES 42 A 770 PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS LEU SEQRES 43 A 770 HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU GLU SEQRES 44 A 770 PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS TYR SEQRES 45 A 770 ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU GLU SEQRES 46 A 770 LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU CYS SEQRES 47 A 770 PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU PHE SEQRES 48 A 770 ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY ALA SEQRES 49 A 770 ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN LEU SEQRES 50 A 770 ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO HIS SEQRES 51 A 770 PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU PRO SEQRES 52 A 770 ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU ARG SEQRES 53 A 770 CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG LYS SEQRES 54 A 770 GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL LYS SEQRES 55 A 770 ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP ALA SEQRES 56 A 770 GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS HIS SEQRES 57 A 770 LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE THR SEQRES 58 A 770 LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE GLU SEQRES 59 A 770 GLU ALA ARG GLU GLN ARG ILE SER GLU ILE THR ARG LEU SEQRES 60 A 770 VAL PRO ARG
HELIX 1 1 SER A 9 LYS A 16 1 8 HELIX 2 2 PRO A 82 ASP A 86 5 5 HELIX 3 3 ASP A 90 LEU A 94 5 5 HELIX 4 4 ASN A 98 ASN A 111 1 14 HELIX 5 5 THR A 136 LYS A 144 1 9 HELIX 6 6 ARG A 147 VAL A 151 5 5 HELIX 7 7 HIS A 154 ARG A 170 1 17 HELIX 8 8 GLY A 184 ALA A 200 1 17 HELIX 9 9 VAL A 210 GLY A 226 1 17 HELIX 10 10 GLU A 264 VAL A 269 5 6 HELIX 11 11 TYR A 278 ALA A 288 1 11 HELIX 12 12 THR A 289 HIS A 297 1 9 HELIX 13 13 GLY A 300 PHE A 304 5 5 HELIX 14 14 SER A 319 VAL A 334 1 16 HELIX 15 15 SER A 337 ASN A 356 1 20 HELIX 16 16 LYS A 372 GLY A 383 1 12 HELIX 17 17 ASN A 385 GLU A 395 1 11 HELIX 18 18 ASN A 410 CYS A 442 1 33 HELIX 19 19 SER A 465 GLU A 497 1 33 HELIX 20 20 ASP A 505 ASP A 509 5 5 HELIX 21 21 SER A 510 GLY A 519 1 10 HELIX 22 22 GLY A 524 GLN A 532 1 9 HELIX 23 23 THR A 539 SER A 552 1 14 HELIX 24 24 ASP A 583 ASN A 588 1 6 HELIX 25 25 GLN A 593 ASP A 602 1 10 HELIX 26 26 ASP A 605 ASP A 614 1 10 HELIX 27 27 THR A 629 THR A 647 1 19 HELIX 28 28 GLU A 668 ASN A 679 1 12 HELIX 29 29 GLY A 680 LYS A 690 1 11 HELIX 30 30 TYR A 698 TYR A 706 1 9 HELIX 31 31 LEU A 707 ALA A 709 5 3 HELIX 32 32 ASP A 718 LEU A 730 1 13 HELIX 33 33 ASP A 733 GLU A 735 5 3 HELIX 34 34 GLY A 749 ARG A 767 1 19
SHEET 1 A 5 ASP A 69 LYS A 73 0 SHEET 2 A 5 SER A 59 LYS A 63 -1 N PHE A 60 O VAL A 72 SHEET 3 A 5 GLU A 48 GLU A 55 -1 N GLU A 51 O LYS A 63 SHEET 4 A 5 TYR A 34 TYR A 37 -1 N ILE A 35 O GLY A 50 SHEET 5 A 5 ASN A 78 GLN A 79 -1 O ASN A 78 N TRP A 36 SHEET 1 B 7 TYR A 116 SER A 119 0 SHEET 2 B 7 PHE A 122 VAL A 126 -1 O VAL A 124 N THR A 117 SHEET 3 B 7 ASN A 649 ILE A 656 1 O ARG A 654 N LEU A 123 SHEET 4 B 7 GLN A 173 THR A 178 1 N LEU A 176 O HIS A 651 SHEET 5 B 7 TYR A 448 ASP A 454 1 O GLY A 451 N LEU A 175 SHEET 6 B 7 GLY A 240 PHE A 247 -1 N ILE A 245 O ILE A 450 SHEET 7 B 7 ILE A 253 TYR A 261 -1 O TYR A 261 N GLY A 240 SHEET 1 C 2 ASN A 227 ALA A 228 0 SHEET 2 C 2 SER A 236 SER A 237 -1 O SER A 236 N ALA A 228 SHEET 1 D 2 GLU A 360 LYS A 361 0 SHEET 2 D 2 ALA A 367 VAL A 368 -1 O VAL A 368 N GLU A 360 SHEET 1 E 2 ARG A 397 ALA A 400 0 SHEET 2 E 2 ASP A 403 ALA A 406 -1 O ASP A 403 N ALA A 400 SHEET 1 F 3 TYR A 558 GLU A 559 0 SHEET 2 F 3 GLU A 567 HIS A 572 -1 O GLY A 569 N GLU A 559 SHEET 3 F 3 GLY A 575 GLU A 580 -1 O TYR A 579 N PHE A 568 SHEET 1 G 3 ASN A 694 ILE A 697 0 SHEET 2 G 3 LYS A 743 PHE A 746 -1 O PHE A 746 N ASN A 694 SHEET 3 G 3 TYR A 737 PHE A 739 -1 N ARG A 738 O PHE A 745
CISPEP 1 GLN A 521 PRO A 522 0 -0.37
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000