1Q5F - Header Asymmetric Unit

HEADER CELL ADHESION 07-AUG-03 1Q5F

TITLE NMR STRUCTURE OF TYPE IVB PILIN (PILS) FROM SALMONELLA TYPHI

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-181; COMPND 5 SYNONYM: TYPE IVB PILIN; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 601; SOURCE 4 GENE: PILS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-H

KEYWDS TYPE IVB PILIN, ALPHA-BETA ROLL, MONOMER, CELL ADHESION

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR X.F.XU,Y.W.TAN,J.HACKETT,M.ZHANG,Y.K.MOK

REVDAT 2 24-FEB-09 1Q5F 1 VERSN REVDAT 1 27-JUL-04 1Q5F 0

JRNL AUTH X.F.XU,Y.W.TAN,L.LAM,J.HACKETT,M.ZHANG,Y.K.MOK JRNL TITL NMR STRUCTURE OF A TYPE IVB PILIN FROM SALMONELLA JRNL TITL 2 TYPHI AND ITS ASSEMBLY INTO PILUS JRNL REF J.BIOL.CHEM. V. 279 31599 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15159389 JRNL DOI 10.1074/JBC.M404727200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1Q5F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB019938.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.55 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PILS U-15N, 13C; 50MM REMARK 210 PHOSPHATE BUFFER; 0.5M SODIUM REMARK 210 SULFATE; 90% H2O, 10% D2O; 1MM REMARK 210 PILS 10% 13C; 50MM PHOSPHATE REMARK 210 BUFFER; 0.5M SODIUM SULFATE; REMARK 210 90% H2O, 10% D2O; 1MM PILS U- REMARK 210 15N; 50MM PHOSPHATE BUFFER; REMARK 210 0.5M SODIUM SULFATE; 90% H2O, REMARK 210 10% D2O; 1MM PILS U-15N; 50MM REMARK 210 PHOSPHATE BUFFER; 0.5M SODIUM REMARK 210 SULFATE; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA, REMARK 210 AMIDE PROTON EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW, REMARK 210 DYANA, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES ARE BASED ON A TOTAL OF 2315 RESTRAINTS, REMARK 210 2033 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 206 DIHEDRAL ANGLE REMARK 210 RESTRAINTS, 76 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 27 -66.13 -128.96 REMARK 500 1 LYS A 29 -62.10 69.11 REMARK 500 1 MET A 50 34.32 -153.44 REMARK 500 1 LYS A 51 31.48 -80.18 REMARK 500 1 ASP A 54 -50.02 -160.96 REMARK 500 1 PHE A 58 166.25 58.66 REMARK 500 1 ALA A 62 -62.75 -107.17 REMARK 500 1 ALA A 73 -76.90 -82.11 REMARK 500 1 ASP A 82 115.79 -35.92 REMARK 500 1 SER A 85 86.42 52.48 REMARK 500 1 THR A 108 -43.95 -142.10 REMARK 500 1 LYS A 120 -36.57 -174.89 REMARK 500 1 VAL A 121 101.95 -48.61 REMARK 500 1 SER A 136 46.94 -150.08 REMARK 500 1 SER A 140 -33.49 -172.21 REMARK 500 1 ASN A 148 98.96 -36.62 REMARK 500 1 THR A 150 -46.48 -147.98 REMARK 500 1 ASP A 166 117.05 -177.21 REMARK 500 1 ARG A 169 79.89 -100.68 REMARK 500 2 LYS A 29 -66.96 -135.74 REMARK 500 2 MET A 49 -71.49 -136.64 REMARK 500 2 ASP A 54 110.74 65.00 REMARK 500 2 THR A 59 86.16 57.17 REMARK 500 2 ALA A 73 -81.16 -123.21 REMARK 500 2 SER A 87 57.80 -175.43 REMARK 500 2 PHE A 110 33.55 -163.02 REMARK 500 2 LYS A 120 -31.92 -171.43 REMARK 500 2 VAL A 121 107.06 -53.50 REMARK 500 2 PRO A 122 -169.47 -74.85 REMARK 500 2 SER A 136 48.44 -150.61 REMARK 500 2 THR A 139 -88.62 -69.55 REMARK 500 2 SER A 140 -40.36 172.86 REMARK 500 2 ASN A 147 34.34 -84.59 REMARK 500 2 ASN A 148 93.36 -46.32 REMARK 500 2 HIS A 149 -168.22 -113.94 REMARK 500 2 THR A 150 -49.71 -138.70 REMARK 500 2 LYS A 153 70.62 -117.91 REMARK 500 2 ALA A 165 -174.91 65.08 REMARK 500 2 ARG A 169 59.50 -174.39 REMARK 500 3 LYS A 29 -64.92 -135.92 REMARK 500 3 MET A 50 60.42 -154.74 REMARK 500 3 TYR A 56 165.95 59.78 REMARK 500 3 THR A 59 56.59 -102.38 REMARK 500 3 SER A 60 83.25 -56.64 REMARK 500 3 ALA A 73 -83.86 -110.34 REMARK 500 3 SER A 85 -33.59 160.36 REMARK 500 3 SER A 87 61.62 -179.80 REMARK 500 3 PHE A 110 29.09 -166.49 REMARK 500 3 LYS A 120 -42.90 160.38 REMARK 500 3 VAL A 121 103.64 -45.87 REMARK 500 3 SER A 136 48.64 -154.97 REMARK 500 3 THR A 139 144.63 61.57 REMARK 500 3 SER A 140 -40.74 -166.47 REMARK 500 3 ASN A 147 41.12 -86.28 REMARK 500 3 ASN A 148 93.77 -55.80 REMARK 500 3 HIS A 149 -168.28 -116.96 REMARK 500 3 THR A 150 -41.96 -136.25 REMARK 500 3 ALA A 152 83.91 -62.98 REMARK 500 3 ASP A 166 137.50 61.35 REMARK 500 3 ASN A 167 -44.03 -162.71 REMARK 500 3 ARG A 169 76.09 -159.16 REMARK 500 4 LYS A 29 -94.05 -114.52 REMARK 500 4 MET A 49 -77.02 -126.52 REMARK 500 4 MET A 50 58.96 -154.89 REMARK 500 4 PHE A 58 159.56 -44.15 REMARK 500 4 THR A 59 170.43 74.62 REMARK 500 4 SER A 60 -68.12 66.56 REMARK 500 4 ALA A 73 -73.46 -92.91 REMARK 500 4 LYS A 120 -31.97 161.57 REMARK 500 4 SER A 136 49.66 -151.81 REMARK 500 4 THR A 139 171.31 -51.67 REMARK 500 4 SER A 140 -31.73 178.92 REMARK 500 4 ASN A 148 92.09 -39.63 REMARK 500 4 THR A 150 -52.14 -146.80 REMARK 500 4 ASP A 151 31.39 -80.03 REMARK 500 4 ALA A 165 -68.89 -165.99 REMARK 500 4 ASP A 166 30.83 -153.44 REMARK 500 4 THR A 170 152.26 -46.28 REMARK 500 5 LYS A 29 -69.55 -127.76 REMARK 500 5 MET A 50 31.00 -146.02 REMARK 500 5 TYR A 56 77.25 58.32 REMARK 500 5 ALA A 62 -70.00 -85.07 REMARK 500 5 MET A 64 -71.61 -53.50 REMARK 500 5 ALA A 73 -70.29 -100.83 REMARK 500 5 ASP A 82 105.39 -50.14 REMARK 500 5 SER A 85 68.45 60.04 REMARK 500 5 SER A 87 124.29 -177.25 REMARK 500 5 TRP A 94 -51.36 -149.60 REMARK 500 5 LYS A 120 -31.11 89.84 REMARK 500 5 VAL A 121 104.39 -47.61 REMARK 500 5 SER A 136 50.75 -153.76 REMARK 500 5 THR A 139 147.90 66.22 REMARK 500 5 SER A 140 -38.40 -179.70 REMARK 500 5 ASN A 147 35.65 -88.57 REMARK 500 5 ASN A 148 97.05 -51.85 REMARK 500 5 HIS A 149 -169.24 -123.05 REMARK 500 5 THR A 150 -41.69 -139.68 REMARK 500 5 LYS A 153 74.73 -113.39 REMARK 500 5 ALA A 165 175.75 55.43 REMARK 500 5 ARG A 169 50.46 -119.56 REMARK 500 6 TRP A 27 147.16 -171.62 REMARK 500 6 MET A 49 -60.27 -137.26 REMARK 500 6 MET A 50 39.67 -162.12 REMARK 500 6 ASP A 54 -54.59 179.47 REMARK 500 6 PHE A 58 -64.45 -101.76 REMARK 500 6 THR A 59 -61.39 -148.06 REMARK 500 6 SER A 60 71.71 38.91 REMARK 500 6 ALA A 62 -61.49 -121.07 REMARK 500 6 ALA A 73 -97.90 -148.25 REMARK 500 6 SER A 85 56.19 79.24 REMARK 500 6 SER A 87 137.01 169.79 REMARK 500 6 ALA A 88 87.63 -67.42 REMARK 500 6 LYS A 120 -38.64 164.74 REMARK 500 6 VAL A 121 103.35 -45.19 REMARK 500 6 SER A 136 53.44 -154.04 REMARK 500 6 THR A 139 171.16 -53.28 REMARK 500 6 SER A 140 -33.64 -171.39 REMARK 500 6 ASN A 148 95.91 -42.53 REMARK 500 6 THR A 150 -47.57 -146.29 REMARK 500 6 ALA A 152 97.71 -63.97 REMARK 500 6 CYS A 163 -45.24 176.47 REMARK 500 6 ALA A 165 154.89 62.48 REMARK 500 6 ASP A 166 7.04 81.10 REMARK 500 6 ASN A 167 -45.04 -148.49 REMARK 500 6 ARG A 169 67.79 -162.78 REMARK 500 7 LYS A 29 -78.29 -105.85 REMARK 500 7 MET A 49 -70.41 -109.47 REMARK 500 7 MET A 50 64.03 -153.76 REMARK 500 7 ASP A 54 -46.10 74.23 REMARK 500 7 ALA A 57 -163.82 49.87 REMARK 500 7 PHE A 58 88.38 48.02 REMARK 500 7 ALA A 73 -77.73 -101.19 REMARK 500 7 SER A 85 63.69 66.56 REMARK 500 7 SER A 87 25.39 -157.35 REMARK 500 7 TRP A 94 46.54 -87.73 REMARK 500 7 PHE A 110 29.44 -148.75 REMARK 500 7 LYS A 120 -18.42 84.19 REMARK 500 7 VAL A 121 107.68 -49.38 REMARK 500 7 SER A 136 55.53 -161.75 REMARK 500 7 SER A 140 -41.89 -169.97 REMARK 500 7 ASN A 147 31.03 -79.70 REMARK 500 7 ASN A 148 98.18 -48.81 REMARK 500 7 HIS A 149 -165.86 -126.22 REMARK 500 7 THR A 150 -37.63 -132.20 REMARK 500 7 ALA A 165 -157.59 43.83 REMARK 500 7 THR A 170 159.57 -49.96 REMARK 500 7 THR A 172 108.24 -45.73 REMARK 500 8 MET A 49 -70.30 -134.00 REMARK 500 8 ALA A 57 69.05 -165.58 REMARK 500 8 SER A 60 95.18 -47.49 REMARK 500 8 ALA A 73 -85.07 -116.08 REMARK 500 8 SER A 85 98.21 62.07 REMARK 500 8 SER A 87 77.83 -175.52 REMARK 500 8 THR A 108 49.49 -80.16 REMARK 500 8 PHE A 110 26.63 -68.48 REMARK 500 8 LYS A 120 -31.47 169.03 REMARK 500 8 VAL A 121 109.47 -50.89 REMARK 500 8 PRO A 122 -169.55 -73.62 REMARK 500 8 SER A 136 62.36 -162.10 REMARK 500 8 SER A 140 28.49 -145.02 REMARK 500 8 ASN A 148 90.69 -36.98 REMARK 500 8 THR A 150 -41.80 -146.68 REMARK 500 8 CYS A 163 -56.97 175.96 REMARK 500 8 ALA A 165 -47.44 71.59 REMARK 500 8 ASP A 166 42.64 -76.26 REMARK 500 8 ASN A 167 -39.16 -172.14 REMARK 500 9 LYS A 29 -82.14 -130.36 REMARK 500 9 MET A 49 -157.80 -102.09 REMARK 500 9 ASP A 54 -56.83 -155.24 REMARK 500 9 TYR A 56 41.16 -156.85 REMARK 500 9 THR A 59 134.94 62.93 REMARK 500 9 ALA A 62 -75.87 -61.49 REMARK 500 9 ALA A 73 -88.75 -118.32 REMARK 500 9 ASP A 82 109.78 -56.25 REMARK 500 9 SER A 85 75.39 65.08 REMARK 500 9 SER A 87 122.95 -172.16 REMARK 500 9 TRP A 94 47.26 -107.26 REMARK 500 9 PHE A 110 26.01 -154.37 REMARK 500 9 LYS A 120 -38.87 179.69 REMARK 500 9 VAL A 121 104.33 -52.62 REMARK 500 9 PRO A 122 -168.08 -74.35 REMARK 500 9 SER A 136 46.42 -159.03 REMARK 500 9 THR A 139 142.86 63.96 REMARK 500 9 SER A 140 -38.52 -177.95 REMARK 500 9 ASN A 147 38.84 -86.48 REMARK 500 9 ASN A 148 95.76 -51.35 REMARK 500 9 HIS A 149 -168.77 -118.36 REMARK 500 9 THR A 150 -40.11 -139.84 REMARK 500 9 GLU A 162 92.57 167.06 REMARK 500 9 THR A 164 152.90 -48.90 REMARK 500 9 ALA A 165 131.02 63.57 REMARK 500 9 ASN A 167 39.99 -160.63 REMARK 500 10 TRP A 27 166.02 175.73 REMARK 500 10 LYS A 30 166.91 62.31 REMARK 500 10 MET A 50 21.16 -162.71 REMARK 500 10 VAL A 53 -73.71 -58.21 REMARK 500 10 THR A 59 177.89 -52.68 REMARK 500 10 SER A 60 60.17 60.88 REMARK 500 10 ALA A 73 -64.01 -100.07 REMARK 500 10 THR A 108 -71.04 -145.99 REMARK 500 10 LYS A 120 -33.46 174.55 REMARK 500 10 VAL A 121 103.03 -46.18 REMARK 500 10 PRO A 122 -167.83 -75.17 REMARK 500 10 SER A 136 46.77 -154.75 REMARK 500 10 THR A 139 135.06 70.17 REMARK 500 10 SER A 140 39.72 179.77 REMARK 500 10 ASN A 147 36.83 -80.43 REMARK 500 10 ASN A 148 96.75 -54.22 REMARK 500 10 HIS A 149 -169.13 -119.64 REMARK 500 10 THR A 150 -40.59 -134.67 REMARK 500 10 ASN A 167 79.73 55.07 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5879 RELATED DB: BMRB

DBREF 1Q5F A 26 181 UNP Q9ZIU9 Q9ZIU9_SALTI 51 206

SEQRES 1 A 156 MET TRP GLY LYS LYS ASP ALA GLY THR GLU LEU THR ASN SEQRES 2 A 156 TYR GLN THR LEU ALA THR ASN THR ILE GLY MET MET LYS SEQRES 3 A 156 GLY VAL ASP GLY TYR ALA PHE THR SER GLY ALA LYS MET SEQRES 4 A 156 THR ASP THR LEU ILE GLN ALA GLY ALA ALA LYS GLY MET SEQRES 5 A 156 THR VAL SER GLY ASP PRO ALA SER GLY SER ALA THR LEU SEQRES 6 A 156 TRP ASN SER TRP GLY GLY GLN ILE VAL VAL ALA PRO ASP SEQRES 7 A 156 THR ALA GLY GLY THR GLY PHE ASN ASN GLY PHE THR ILE SEQRES 8 A 156 THR THR ASN LYS VAL PRO GLN SER ALA CYS VAL SER ILE SEQRES 9 A 156 SER THR GLY MET SER ARG SER GLY GLY THR SER GLY ILE SEQRES 10 A 156 LYS ILE ASN GLY ASN ASN HIS THR ASP ALA LYS VAL THR SEQRES 11 A 156 ALA GLU ILE ALA SER SER GLU CYS THR ALA ASP ASN GLY SEQRES 12 A 156 ARG THR GLY THR ASN THR LEU VAL PHE ASN TYR ASN GLY

HELIX 1 1 ALA A 32 ILE A 47 1 16 HELIX 2 2 ALA A 62 ALA A 71 1 10 HELIX 3 3 PRO A 122 ARG A 135 1 14 HELIX 4 4 THR A 155 CYS A 163 1 9

SHEET 1 A 6 VAL A 79 SER A 80 0 SHEET 2 A 6 ALA A 88 TRP A 91 -1 O THR A 89 N SER A 80 SHEET 3 A 6 GLN A 97 PRO A 102 -1 O ILE A 98 N LEU A 90 SHEET 4 A 6 GLY A 113 ASN A 119 -1 O THR A 115 N ALA A 101 SHEET 5 A 6 THR A 174 ASN A 180 -1 O PHE A 177 N ILE A 116 SHEET 6 A 6 LYS A 143 ILE A 144 -1 N LYS A 143 O VAL A 176

SSBOND 1 CYS A 126 CYS A 163 1555 1555 2.02

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000