10 20 30 40 50 60 70 80 1Q4K - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 04-AUG-03 1Q4K
TITLE THE POLO-BOX DOMAIN OF PLK1 IN COMPLEX WITH A PHOSPHO- TITLE 2 PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK; COMPND 3 CHAIN: B, A, C; COMPND 4 FRAGMENT: POLO BOX DOMAIN OF HUMAN PLK1; COMPND 5 SYNONYM: PLK-1, SERINE-THREONINE PROTEIN KINASE 13, STPK13; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHO-PEPTIDE SEQUENCE COMPND 11 MET.GLN.SER.PTHR.PRO.LEU; COMPND 12 CHAIN: D, E, F; COMPND 13 FRAGMENT: PHOSPHO-PEPTIDE; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICAL SYNTHESIS
KEYWDS SIX-STRANDED ANTI-PARALLEL BETA SHEET WITH ONE ALPHA HELIX, KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.CHENG,E.D.LOWE,J.SINCLAIR,E.A.NIGG,L.N.JOHNSON
REVDAT 2 24-FEB-09 1Q4K 1 VERSN REVDAT 1 11-NOV-03 1Q4K 0
JRNL AUTH K.Y.CHENG,E.D.LOWE,J.SINCLAIR,E.A.NIGG,L.N.JOHNSON JRNL TITL THE CRYSTAL STRUCTURE OF THE HUMAN POLO-LIKE JRNL TITL 2 KINASE-1 POLO BOX DOMAIN AND ITS PHOSPHO-PEPTIDE JRNL TITL 3 COMPLEX. JRNL REF EMBO J. V. 22 5757 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 14592974 JRNL DOI 10.1093/EMBOJ/CDG558
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 36665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.373 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5628 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5100 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7608 ; 1.591 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11854 ; 1.269 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 7.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6138 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1185 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1264 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6263 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3546 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3377 ; 0.707 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5450 ; 1.341 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2251 ; 1.778 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2158 ; 3.048 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1Q4K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB019907.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.09600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.25800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: UNLIGANDED POLO BOX DOMAIN REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20000, MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 345 REMARK 465 GLY B 346 REMARK 465 LEU B 347 REMARK 465 GLU B 348 REMARK 465 ASN B 349 REMARK 465 PRO B 350 REMARK 465 LEU B 351 REMARK 465 PRO B 352 REMARK 465 GLU B 353 REMARK 465 ARG B 354 REMARK 465 PRO B 355 REMARK 465 ARG B 356 REMARK 465 GLU B 357 REMARK 465 LYS B 358 REMARK 465 GLU B 359 REMARK 465 GLU B 360 REMARK 465 PRO B 361 REMARK 465 VAL B 362 REMARK 465 VAL B 363 REMARK 465 ARG B 364 REMARK 465 GLU B 365 REMARK 465 THR B 366 REMARK 465 GLY B 367 REMARK 465 GLU B 368 REMARK 465 VAL B 369 REMARK 465 VAL B 370 REMARK 465 SER B 595 REMARK 465 ALA B 596 REMARK 465 SER B 597 REMARK 465 ASN B 598 REMARK 465 ARG B 599 REMARK 465 LEU B 600 REMARK 465 LYS B 601 REMARK 465 ALA B 602 REMARK 465 SER B 603 REMARK 465 LYS A 345 REMARK 465 GLY A 346 REMARK 465 LEU A 347 REMARK 465 GLU A 348 REMARK 465 ASN A 349 REMARK 465 PRO A 350 REMARK 465 LEU A 351 REMARK 465 PRO A 352 REMARK 465 GLU A 353 REMARK 465 ARG A 354 REMARK 465 PRO A 355 REMARK 465 ARG A 356 REMARK 465 GLU A 357 REMARK 465 LYS A 358 REMARK 465 GLU A 359 REMARK 465 GLU A 360 REMARK 465 PRO A 361 REMARK 465 VAL A 362 REMARK 465 VAL A 363 REMARK 465 ARG A 364 REMARK 465 GLU A 365 REMARK 465 THR A 366 REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 ASP A 371 REMARK 465 ARG A 594 REMARK 465 SER A 595 REMARK 465 ALA A 596 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 ARG A 599 REMARK 465 LEU A 600 REMARK 465 LYS A 601 REMARK 465 ALA A 602 REMARK 465 SER A 603 REMARK 465 LYS C 345 REMARK 465 GLY C 346 REMARK 465 LEU C 347 REMARK 465 GLU C 348 REMARK 465 ASN C 349 REMARK 465 PRO C 350 REMARK 465 LEU C 351 REMARK 465 PRO C 352 REMARK 465 GLU C 353 REMARK 465 ARG C 354 REMARK 465 PRO C 355 REMARK 465 ARG C 356 REMARK 465 GLU C 357 REMARK 465 LYS C 358 REMARK 465 GLU C 359 REMARK 465 GLU C 360 REMARK 465 PRO C 361 REMARK 465 VAL C 362 REMARK 465 VAL C 363 REMARK 465 ARG C 364 REMARK 465 GLU C 365 REMARK 465 THR C 366 REMARK 465 GLY C 367 REMARK 465 GLU C 368 REMARK 465 VAL C 369 REMARK 465 VAL C 370 REMARK 465 ASP C 371 REMARK 465 ALA C 495 REMARK 465 ASN C 496 REMARK 465 ILE C 497 REMARK 465 THR C 498 REMARK 465 PRO C 499 REMARK 465 ARG C 500 REMARK 465 GLU C 501 REMARK 465 GLY C 502 REMARK 465 ARG C 594 REMARK 465 SER C 595 REMARK 465 ALA C 596 REMARK 465 SER C 597 REMARK 465 ASN C 598 REMARK 465 ARG C 599 REMARK 465 LEU C 600 REMARK 465 LYS C 601 REMARK 465 ALA C 602 REMARK 465 SER C 603
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 493 O HOH A 21 2.04 REMARK 500 C THR B 517 O HOH B 36 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 589 O HOH B 13 1554 1.91 REMARK 500 OD2 ASP B 419 OH TYR A 445 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 537 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 554 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 537 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 376 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 416 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 372 -7.82 81.78 REMARK 500 GLU B 391 63.47 -113.26 REMARK 500 TYR B 417 51.71 -110.29 REMARK 500 LYS B 420 -1.97 -153.87 REMARK 500 ASN B 430 -2.80 74.34 REMARK 500 ASP B 438 22.14 -78.34 REMARK 500 ASP B 449 -45.30 -137.49 REMARK 500 ASN B 496 43.21 -94.91 REMARK 500 GLU B 504 114.16 61.51 REMARK 500 THR B 517 -106.62 -99.06 REMARK 500 HIS B 538 17.75 58.77 REMARK 500 GLU A 391 68.63 -101.49 REMARK 500 ARG A 396 56.45 -119.81 REMARK 500 TYR A 421 -61.88 -131.37 REMARK 500 ASN A 430 -1.67 81.50 REMARK 500 ASP A 449 -53.16 -146.58 REMARK 500 SER A 467 25.78 110.55 REMARK 500 GLU A 504 109.55 5.84 REMARK 500 THR A 517 -74.01 -108.33 REMARK 500 CYS A 573 136.11 -5.06 REMARK 500 TYR C 417 46.27 -108.94 REMARK 500 LYS C 420 -45.17 -146.88 REMARK 500 ASN C 430 -0.99 64.20 REMARK 500 ASP C 449 -65.87 -146.16 REMARK 500 GLU C 504 -43.26 50.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 517 ARG A 518 59.72 REMARK 500 CYS A 572 CYS A 573 149.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 109 DISTANCE = 6.29 ANGSTROMS
REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SEQUENCE DATABASE REFERENCE FOUND FOR PHOSPHO-PEPTIDE REMARK 999 (ENTITY 2, CHAINS D,E,F)AT THE TIME OF PROCESSING
DBREF 1Q4K A 345 603 UNP P53350 PLK1_HUMAN 345 603 DBREF 1Q4K B 345 603 UNP P53350 PLK1_HUMAN 345 603 DBREF 1Q4K C 345 603 UNP P53350 PLK1_HUMAN 345 603 DBREF 1Q4K D 1 6 PDB 1Q4K 1Q4K 1 6 DBREF 1Q4K E 1 6 PDB 1Q4K 1Q4K 1 6 DBREF 1Q4K F 1 6 PDB 1Q4K 1Q4K 1 6
SEQRES 1 B 259 LYS GLY LEU GLU ASN PRO LEU PRO GLU ARG PRO ARG GLU SEQRES 2 B 259 LYS GLU GLU PRO VAL VAL ARG GLU THR GLY GLU VAL VAL SEQRES 3 B 259 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 4 B 259 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 5 B 259 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 6 B 259 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 7 B 259 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 8 B 259 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 9 B 259 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 10 B 259 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 11 B 259 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 12 B 259 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 13 B 259 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 14 B 259 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 15 B 259 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 16 B 259 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 17 B 259 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 18 B 259 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 19 B 259 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 20 B 259 SER SER ARG SER ALA SER ASN ARG LEU LYS ALA SER SEQRES 1 A 259 LYS GLY LEU GLU ASN PRO LEU PRO GLU ARG PRO ARG GLU SEQRES 2 A 259 LYS GLU GLU PRO VAL VAL ARG GLU THR GLY GLU VAL VAL SEQRES 3 A 259 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 4 A 259 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 5 A 259 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 6 A 259 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 7 A 259 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 8 A 259 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 9 A 259 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 10 A 259 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 11 A 259 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 12 A 259 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 13 A 259 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 14 A 259 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 15 A 259 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 16 A 259 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 17 A 259 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 18 A 259 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 19 A 259 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 20 A 259 SER SER ARG SER ALA SER ASN ARG LEU LYS ALA SER SEQRES 1 C 259 LYS GLY LEU GLU ASN PRO LEU PRO GLU ARG PRO ARG GLU SEQRES 2 C 259 LYS GLU GLU PRO VAL VAL ARG GLU THR GLY GLU VAL VAL SEQRES 3 C 259 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 4 C 259 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 5 C 259 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 6 C 259 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 7 C 259 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 8 C 259 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 9 C 259 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 10 C 259 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 11 C 259 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 12 C 259 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 13 C 259 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 14 C 259 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 15 C 259 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 16 C 259 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 17 C 259 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 18 C 259 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 19 C 259 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 20 C 259 SER SER ARG SER ALA SER ASN ARG LEU LYS ALA SER SEQRES 1 D 6 MET GLN SER TPO PRO LEU SEQRES 1 E 6 MET GLN SER TPO PRO LEU SEQRES 1 F 6 MET GLN SER TPO PRO LEU
MODRES 1Q4K TPO D 4 THR PHOSPHOTHREONINE MODRES 1Q4K TPO E 4 THR PHOSPHOTHREONINE MODRES 1Q4K TPO F 4 THR PHOSPHOTHREONINE
HET TPO D 4 11 HET TPO E 4 11 HET TPO F 4 11
HETNAM TPO PHOSPHOTHREONINE
HETSYN TPO PHOSPHONOTHREONINE
FORMUL 4 TPO 3(C4 H10 N O6 P) FORMUL 7 HOH *191(H2 O)
HELIX 1 1 CYS B 372 SER B 387 1 16 HELIX 2 2 ARG B 396 GLU B 401 5 6 HELIX 3 3 ASP B 402 ILE B 406 5 5 HELIX 4 4 PRO B 469 SER B 471 5 3 HELIX 5 5 LEU B 472 LEU B 490 1 19 HELIX 6 6 LEU B 564 GLY B 571 1 8 HELIX 7 7 CYS B 573 SER B 593 1 21 HELIX 8 8 CYS A 372 SER A 387 1 16 HELIX 9 9 ARG A 396 GLU A 401 5 6 HELIX 10 10 ASP A 402 ILE A 406 5 5 HELIX 11 11 PRO A 469 SER A 471 5 3 HELIX 12 12 LEU A 472 LEU A 490 1 19 HELIX 13 13 LEU A 564 GLY A 571 1 8 HELIX 14 14 CYS A 573 SER A 593 1 21 HELIX 15 15 CYS C 372 SER C 387 1 16 HELIX 16 16 ARG C 396 GLU C 401 5 6 HELIX 17 17 ASP C 402 ILE C 406 5 5 HELIX 18 18 LEU C 472 LEU C 490 1 19 HELIX 19 19 LEU C 564 GLY C 571 1 8 HELIX 20 20 CYS C 573 SER C 593 1 21
SHEET 1 A 6 VAL B 411 TYR B 417 0 SHEET 2 A 6 GLY B 422 LEU B 427 -1 O GLY B 424 N VAL B 415 SHEET 3 A 6 VAL B 432 PHE B 436 -1 O GLY B 433 N TYR B 425 SHEET 4 A 6 ARG B 441 LEU B 444 -1 O LEU B 444 N VAL B 432 SHEET 5 A 6 SER B 450 ILE B 454 -1 O ILE B 454 N ARG B 441 SHEET 6 A 6 GLU B 460 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 B 6 LEU B 511 ARG B 516 0 SHEET 2 B 6 ALA B 520 LEU B 525 -1 O HIS B 524 N THR B 513 SHEET 3 B 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 B 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 B 6 ALA B 549 ILE B 553 -1 O ILE B 553 N LYS B 540 SHEET 6 B 6 PHE B 559 ARG B 563 -1 O TYR B 562 N VAL B 550 SHEET 1 C 6 VAL A 411 ASP A 416 0 SHEET 2 C 6 GLY A 422 LEU A 427 -1 O GLY A 424 N VAL A 415 SHEET 3 C 6 VAL A 432 PHE A 436 -1 O LEU A 435 N LEU A 423 SHEET 4 C 6 ARG A 441 LEU A 444 -1 O LEU A 444 N VAL A 432 SHEET 5 C 6 SER A 450 ILE A 454 -1 O ILE A 454 N ARG A 441 SHEET 6 C 6 GLU A 460 THR A 464 -1 O SER A 461 N TYR A 453 SHEET 1 D 6 LEU A 511 ARG A 516 0 SHEET 2 D 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 D 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 D 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 D 6 ALA A 549 ILE A 553 -1 O ALA A 549 N CYS A 544 SHEET 6 D 6 PHE A 559 ARG A 563 -1 O TYR A 562 N VAL A 550 SHEET 1 E 6 VAL C 411 ASP C 416 0 SHEET 2 E 6 GLY C 422 LEU C 427 -1 O GLY C 424 N VAL C 415 SHEET 3 E 6 VAL C 432 PHE C 436 -1 O GLY C 433 N TYR C 425 SHEET 4 E 6 ARG C 441 LEU C 444 -1 O LEU C 444 N VAL C 432 SHEET 5 E 6 SER C 450 ILE C 454 -1 O GLN C 452 N ILE C 443 SHEET 6 E 6 SER C 461 THR C 464 -1 O LEU C 463 N LEU C 451 SHEET 1 F 6 LEU C 511 ARG C 516 0 SHEET 2 F 6 ALA C 520 LEU C 525 -1 O ILE C 522 N PHE C 515 SHEET 3 F 6 VAL C 530 PHE C 534 -1 O GLN C 531 N LEU C 523 SHEET 4 F 6 LYS C 540 CYS C 544 -1 O LEU C 543 N VAL C 530 SHEET 5 F 6 ALA C 549 ILE C 553 -1 O ILE C 553 N LYS C 540 SHEET 6 F 6 PHE C 559 ARG C 563 -1 O TYR C 562 N VAL C 550
LINK C SER D 3 N TPO D 4 1555 1555 1.33 LINK C TPO D 4 N PRO D 5 1555 1555 1.35 LINK C SER E 3 N TPO E 4 1555 1555 1.34 LINK C TPO E 4 N PRO E 5 1555 1555 1.34 LINK C SER F 3 N TPO F 4 1555 1555 1.34 LINK C TPO F 4 N PRO F 5 1555 1555 1.33
CRYST1 57.071 56.888 85.050 91.45 103.21 118.50 P 1 3
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017522 0.009515 0.005679 0.00000
SCALE2 0.000000 0.020003 0.003183 0.00000
SCALE3 0.000000 0.000000 0.012229 0.00000