10 20 30 40 50 60 70 80 1PZM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 11-JUL-03 1PZM
TITLE CRYSTAL STRUCTURE OF HGPRT-ASE FROM LEISHMANIA TARENTOLAE IN COMPLEX TITLE 2 WITH GMP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HGPRT; COMPND 5 EC: 2.4.2.8; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA TARENTOLAE; SOURCE 3 ORGANISM_TAXID: 5689; SOURCE 4 GENE: HGPRT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A(+)
KEYWDS TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.S.MONZANI,S.TRAPANI,G.OLIVA,O.H.THIEMANN
REVDAT 4 13-JUL-11 1PZM 1 VERSN REVDAT 3 24-FEB-09 1PZM 1 VERSN REVDAT 2 04-DEC-07 1PZM 1 JRNL REVDAT 1 27-JUL-04 1PZM 0
JRNL AUTH P.S.MONZANI,S.TRAPANI,O.H.THIEMANN,G.OLIVA JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA TARENTOLAE JRNL TITL 2 HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE. JRNL REF BMC STRUCT.BIOL. V. 7 59 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17894860 JRNL DOI 10.1186/1472-6807-7-59
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.S.MONZANI,J.D.ALFONZO,L.SIMPSON,G.OLIVA,O.H.THIEMANN REMARK 1 TITL CLONING, CHARACTERIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF LEISHMANIA HYPOXANTHINE-GUANINE REMARK 1 TITL 3 PHOSPHORIBOSYLTRANSFERASE REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1598 3 2002 REMARK 1 REFN ISSN 0006-3002 REMARK 1 DOI 10.1016/S0167-4838(02)00334-5
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.09 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 24231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.84000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3750 ; 2.028 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;13.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1987 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1228 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1695 ; 1.200 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2739 ; 2.012 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 3.035 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 4.491 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 202 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5410 48.7630 29.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.4934 T22: 0.0065 REMARK 3 T33: 0.0546 T12: -0.0397 REMARK 3 T13: -0.0104 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6888 L22: 2.7784 REMARK 3 L33: 1.2448 L12: -0.2400 REMARK 3 L13: -0.0781 L23: -0.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.1159 S13: 0.1187 REMARK 3 S21: 0.1973 S22: -0.0621 S23: -0.2914 REMARK 3 S31: -0.2053 S32: 0.0905 S33: 0.0303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 201 REMARK 3 RESIDUE RANGE : B 302 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1370 25.7170 32.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.4402 T22: 0.0059 REMARK 3 T33: 0.0332 T12: -0.0164 REMARK 3 T13: -0.0057 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.7328 L22: 1.3119 REMARK 3 L33: 0.6084 L12: -0.3069 REMARK 3 L13: 0.0609 L23: -0.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.0387 S13: -0.0186 REMARK 3 S21: -0.0373 S22: -0.0202 S23: -0.0608 REMARK 3 S31: 0.0500 S32: 0.0153 S33: -0.0185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 1PZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019730.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.53700 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1TC1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, I-PROPANOL, GLYCEROL, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.05200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.79900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.79900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.05200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTENT REPRESENTS THE BIOLOGICAL REMARK 300 ASSEMBLY, WHICH IS A DIMER.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 HIS A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 ARG A 18 REMARK 465 ASN A 19 REMARK 465 SER A 95 REMARK 465 TYR A 96 REMARK 465 GLY A 97 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 VAL A 100 REMARK 465 GLU A 101 REMARK 465 THR A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 GLN A 105 REMARK 465 VAL A 106 REMARK 465 ARG A 107 REMARK 465 TYR A 203 REMARK 465 TYR A 204 REMARK 465 GLU A 205 REMARK 465 LYS A 206 REMARK 465 ALA A 207 REMARK 465 GLU A 208 REMARK 465 SER A 209 REMARK 465 LYS A 210 REMARK 465 LEU A 211 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 ASP B 10 REMARK 465 HIS B 11 REMARK 465 VAL B 12 REMARK 465 GLY B 13 REMARK 465 ASP B 14 REMARK 465 VAL B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 ARG B 18 REMARK 465 ASN B 19 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 TYR B 96 REMARK 465 GLY B 97 REMARK 465 SER B 98 REMARK 465 GLY B 99 REMARK 465 VAL B 100 REMARK 465 GLU B 101 REMARK 465 THR B 102 REMARK 465 SER B 103 REMARK 465 GLY B 104 REMARK 465 GLN B 105 REMARK 465 GLU B 202 REMARK 465 TYR B 203 REMARK 465 TYR B 204 REMARK 465 GLU B 205 REMARK 465 LYS B 206 REMARK 465 ALA B 207 REMARK 465 GLU B 208 REMARK 465 SER B 209 REMARK 465 LYS B 210 REMARK 465 LEU B 211
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CE NZ REMARK 470 SER A 94 CB OG REMARK 470 LEU A 109 CB CG CD1 CD2 REMARK 470 ARG A 113 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN A 118 CB CG OD1 REMARK 470 LYS A 145 CB CG CD CE NZ REMARK 470 LYS A 201 CB CG CD CE NZ REMARK 470 GLU A 202 CB CG CD OE1 OE2 REMARK 470 MET B 22 CG SD CE REMARK 470 SER B 23 CB OG REMARK 470 LYS B 49 CE NZ REMARK 470 ARG B 113 NE CZ NH1 NH2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 LYS B 201 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 317 O HOH B 400 2.07 REMARK 500 O3' 5GP A 301 O HOH A 378 2.09 REMARK 500 O HOH A 409 O HOH A 410 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 20 CZ TYR B 20 CE2 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 185 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 148.30 -170.63 REMARK 500 LEU A 109 -32.86 -143.02 REMARK 500 ASP A 129 -85.32 -116.19 REMARK 500 LYS A 157 75.67 -112.14 REMARK 500 GLU A 188 -12.21 83.19 REMARK 500 TYR A 190 0.47 80.51 REMARK 500 LYS A 201 -14.26 -21.34 REMARK 500 ASP B 129 -90.55 -119.37 REMARK 500 LYS B 157 69.13 -118.43 REMARK 500 GLU B 188 -3.50 69.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 374 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 379 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 381 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 397 DISTANCE = 5.32 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 302
DBREF 1PZM A 1 211 UNP Q9NJI5 Q9NJI5_LEITA 1 210 DBREF 1PZM B 1 211 UNP Q9NJI5 Q9NJI5_LEITA 1 210
SEQADV 1PZM ARG A 176 UNP Q9NJI5 HIS 176 CONFLICT SEQADV 1PZM GLY A 183 UNP Q9NJI5 VAL 183 CONFLICT SEQADV 1PZM MET A 184 UNP Q9NJI5 TRP 184 CONFLICT SEQADV 1PZM ASP A 185 UNP Q9NJI5 THR 185 CONFLICT SEQADV 1PZM GLU A 188 UNP Q9NJI5 ASP 188 CONFLICT SEQADV 1PZM SER A 189 UNP Q9NJI5 INSERTION SEQADV 1PZM TYR A 190 UNP Q9NJI5 LEU 189 CONFLICT SEQADV 1PZM GLU A 192 UNP Q9NJI5 GLY 191 CONFLICT SEQADV 1PZM LEU A 193 UNP Q9NJI5 VAL 192 CONFLICT SEQADV 1PZM ARG A 194 UNP Q9NJI5 PRO 193 CONFLICT SEQADV 1PZM ARG B 176 UNP Q9NJI5 HIS 176 CONFLICT SEQADV 1PZM GLY B 183 UNP Q9NJI5 VAL 183 CONFLICT SEQADV 1PZM MET B 184 UNP Q9NJI5 TRP 184 CONFLICT SEQADV 1PZM ASP B 185 UNP Q9NJI5 THR 185 CONFLICT SEQADV 1PZM GLU B 188 UNP Q9NJI5 ASP 188 CONFLICT SEQADV 1PZM SER B 189 UNP Q9NJI5 INSERTION SEQADV 1PZM TYR B 190 UNP Q9NJI5 LEU 189 CONFLICT SEQADV 1PZM GLU B 192 UNP Q9NJI5 GLY 191 CONFLICT SEQADV 1PZM LEU B 193 UNP Q9NJI5 VAL 192 CONFLICT SEQADV 1PZM ARG B 194 UNP Q9NJI5 PRO 193 CONFLICT
SEQRES 1 A 211 MET SER ASN SER VAL LYS SER PRO SER ASP HIS VAL GLY SEQRES 2 A 211 ASP VAL GLY ARG ARG ASN TYR PRO MET SER ALA ARG THR SEQRES 3 A 211 LEU VAL THR GLN GLU GLN VAL TRP ALA ALA THR ALA LYS SEQRES 4 A 211 CYS ALA LYS LYS ILE ALA ALA ASP TYR LYS ASP PHE HIS SEQRES 5 A 211 LEU THR ALA ASP ASN PRO LEU TYR LEU LEU CYS VAL LEU SEQRES 6 A 211 LYS GLY SER PHE ILE PHE THR ALA ASP LEU ALA ARG PHE SEQRES 7 A 211 LEU ALA ASP GLU GLY VAL PRO VAL LYS VAL GLU PHE ILE SEQRES 8 A 211 CYS ALA SER SER TYR GLY SER GLY VAL GLU THR SER GLY SEQRES 9 A 211 GLN VAL ARG MET LEU LEU ASP VAL ARG ASP SER VAL GLU SEQRES 10 A 211 ASN ARG HIS ILE MET LEU VAL GLU ASP ILE VAL ASP SER SEQRES 11 A 211 ALA ILE THR LEU GLN TYR LEU MET ARG PHE MET LEU ALA SEQRES 12 A 211 LYS LYS PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP SEQRES 13 A 211 LYS PRO SER GLY ARG LYS VAL ASP VAL LEU VAL ASP TYR SEQRES 14 A 211 PRO VAL ILE THR ILE PRO ARG ALA PHE VAL ILE GLY TYR SEQRES 15 A 211 GLY MET ASP PHE ALA GLU SER TYR ARG GLU LEU ARG ASP SEQRES 16 A 211 ILE CYS VAL LEU LYS LYS GLU TYR TYR GLU LYS ALA GLU SEQRES 17 A 211 SER LYS LEU SEQRES 1 B 211 MET SER ASN SER VAL LYS SER PRO SER ASP HIS VAL GLY SEQRES 2 B 211 ASP VAL GLY ARG ARG ASN TYR PRO MET SER ALA ARG THR SEQRES 3 B 211 LEU VAL THR GLN GLU GLN VAL TRP ALA ALA THR ALA LYS SEQRES 4 B 211 CYS ALA LYS LYS ILE ALA ALA ASP TYR LYS ASP PHE HIS SEQRES 5 B 211 LEU THR ALA ASP ASN PRO LEU TYR LEU LEU CYS VAL LEU SEQRES 6 B 211 LYS GLY SER PHE ILE PHE THR ALA ASP LEU ALA ARG PHE SEQRES 7 B 211 LEU ALA ASP GLU GLY VAL PRO VAL LYS VAL GLU PHE ILE SEQRES 8 B 211 CYS ALA SER SER TYR GLY SER GLY VAL GLU THR SER GLY SEQRES 9 B 211 GLN VAL ARG MET LEU LEU ASP VAL ARG ASP SER VAL GLU SEQRES 10 B 211 ASN ARG HIS ILE MET LEU VAL GLU ASP ILE VAL ASP SER SEQRES 11 B 211 ALA ILE THR LEU GLN TYR LEU MET ARG PHE MET LEU ALA SEQRES 12 B 211 LYS LYS PRO ALA SER LEU LYS THR VAL VAL LEU LEU ASP SEQRES 13 B 211 LYS PRO SER GLY ARG LYS VAL ASP VAL LEU VAL ASP TYR SEQRES 14 B 211 PRO VAL ILE THR ILE PRO ARG ALA PHE VAL ILE GLY TYR SEQRES 15 B 211 GLY MET ASP PHE ALA GLU SER TYR ARG GLU LEU ARG ASP SEQRES 16 B 211 ILE CYS VAL LEU LYS LYS GLU TYR TYR GLU LYS ALA GLU SEQRES 17 B 211 SER LYS LEU
HET 5GP A 301 37 HET 5GP B 302 24
HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE
FORMUL 3 5GP 2(C10 H14 N5 O8 P) FORMUL 5 HOH *243(H2 O)
HELIX 1 1 THR A 29 LYS A 49 1 21 HELIX 2 2 ASP A 50 HIS A 52 5 3 HELIX 3 3 SER A 68 GLU A 82 1 15 HELIX 4 4 ALA A 131 ALA A 143 1 13 HELIX 5 5 PRO A 158 ARG A 161 5 4 HELIX 6 6 THR B 29 TYR B 48 1 20 HELIX 7 7 LYS B 49 HIS B 52 5 4 HELIX 8 8 SER B 68 GLU B 82 1 15 HELIX 9 9 VAL B 106 ASP B 114 1 9 HELIX 10 10 ALA B 131 ALA B 143 1 13 HELIX 11 11 PRO B 158 ARG B 161 5 4
SHEET 1 A 3 SER A 23 VAL A 28 0 SHEET 2 A 3 ILE A 196 LEU A 199 -1 O ILE A 196 N VAL A 28 SHEET 3 A 3 VAL A 179 ILE A 180 -1 N ILE A 180 O CYS A 197 SHEET 1 B 5 VAL A 86 ILE A 91 0 SHEET 2 B 5 LEU A 59 VAL A 64 1 N CYS A 63 O GLU A 89 SHEET 3 B 5 HIS A 120 VAL A 128 1 O MET A 122 N LEU A 62 SHEET 4 B 5 SER A 148 ASP A 156 1 O VAL A 152 N LEU A 123 SHEET 5 B 5 TYR A 169 THR A 173 1 O VAL A 171 N VAL A 153 SHEET 1 C 3 ALA B 24 VAL B 28 0 SHEET 2 C 3 ILE B 196 LEU B 199 -1 O VAL B 198 N ARG B 25 SHEET 3 C 3 PHE B 178 ILE B 180 -1 N PHE B 178 O LEU B 199 SHEET 1 D 5 VAL B 86 ILE B 91 0 SHEET 2 D 5 LEU B 59 VAL B 64 1 N CYS B 63 O ILE B 91 SHEET 3 D 5 HIS B 120 VAL B 128 1 O MET B 122 N TYR B 60 SHEET 4 D 5 SER B 148 ASP B 156 1 O SER B 148 N ILE B 121 SHEET 5 D 5 TYR B 169 THR B 173 1 O ILE B 172 N ASP B 156
CISPEP 1 LEU A 65 LYS A 66 0 5.49 CISPEP 2 LEU B 65 LYS B 66 0 0.55
SITE 1 AC1 17 ASP A 126 ILE A 127 ASP A 129 SER A 130 SITE 2 AC1 17 ALA A 131 ILE A 132 THR A 133 LYS A 157 SITE 3 AC1 17 ALA A 177 PHE A 178 VAL A 179 MET A 184 SITE 4 AC1 17 ASP A 185 HOH A 321 HOH A 378 HOH A 403 SITE 5 AC1 17 HOH A 408 SITE 1 AC2 20 ASN B 118 ASP B 126 ILE B 127 ASP B 129 SITE 2 AC2 20 SER B 130 ALA B 131 ILE B 132 THR B 133 SITE 3 AC2 20 LYS B 157 ALA B 177 PHE B 178 VAL B 179 SITE 4 AC2 20 ASP B 185 HOH B 303 HOH B 337 HOH B 352 SITE 5 AC2 20 HOH B 354 HOH B 376 HOH B 429 HOH B 436
CRYST1 58.104 85.443 87.598 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017211 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011704 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011416 0.00000