1PZ0 - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 09-JUL-03 1PZ0

TITLE STRUCTURE OF NADPH-DEPENDENT FAMILY 11 ALDO-KETO REDUCTASE TITLE 2 AKR11A(HOLO)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: IOLS PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VEGETATIVE PROTEIN 147, VEG147; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: IOLS OR SS92ER; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21*; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB2

KEYWDS BETA-ALPHA BARREL, ALDO-KETO REDUCTASE, TIM BARREL, KEYWDS 2 OXIDOREDUCTASE

EXPDTA X-RAY DIFFRACTION

AUTHOR A.H.EHRENSBERGER,D.K.WILSON

REVDAT 2 24-FEB-09 1PZ0 1 VERSN REVDAT 1 30-MAR-04 1PZ0 0

JRNL AUTH A.H.EHRENSBERGER,D.K.WILSON JRNL TITL STRUCTURAL AND CATALYTIC DIVERSITY IN THE TWO JRNL TITL 2 FAMILY 11 ALDO-KETO REDUCTASES JRNL REF J.MOL.BIOL. V. 337 661 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15019785 JRNL DOI 10.1016/J.JMB.2004.01.059

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 13309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 678 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.46 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1PZ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019711.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.37 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : CURVED CRYSTAL REMARK 200 OPTICS : CURVED CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: AKR11A(APO) REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, NADP+, PH 10.37, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.97650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.97650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE MONOMER FORMS THE BIOLOGICAL UNIT.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 124 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 -7.98 -51.99 REMARK 500 THR A 54 -168.98 -127.81 REMARK 500 TYR A 58 93.17 -67.75 REMARK 500 ALA A 86 -35.29 169.22 REMARK 500 GLN A 90 -102.34 -131.95 REMARK 500 ASN A 92 29.15 40.29 REMARK 500 ASN A 228 35.78 -72.34 REMARK 500 GLU A 231 -60.38 111.63 REMARK 500 ALA A 280 151.24 179.02 REMARK 500 PHE A 309 47.23 -108.94 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 461 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 7.07 ANGSTROMS

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 314 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 270 O REMARK 620 2 HOH A 406 O 159.6 REMARK 620 3 LEU A 268 O 85.7 76.8 REMARK 620 4 ILE A 273 O 78.8 89.3 85.4 REMARK 620 5 HOH A 418 O 90.9 100.3 93.3 169.7 REMARK 620 6 HOH A 337 O 107.1 89.4 165.6 90.6 93.0 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 314 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 313

DBREF 1PZ0 A 1 310 UNP P46336 IOLS_BACSU 1 310

SEQADV 1PZ0 MSE A 1 UNP P46336 MET 1 MODIFIED RESIDUE SEQADV 1PZ0 MSE A 51 UNP P46336 MET 51 MODIFIED RESIDUE SEQADV 1PZ0 MSE A 143 UNP P46336 MET 143 MODIFIED RESIDUE SEQADV 1PZ0 PRO A 311 UNP P46336 CLONING ARTIFACT SEQADV 1PZ0 GLY A 312 UNP P46336 CLONING ARTIFACT

SEQRES 1 A 312 MSE LYS LYS ALA LYS LEU GLY LYS SER ASP LEU GLN VAL SEQRES 2 A 312 PHE PRO ILE GLY LEU GLY THR ASN ALA VAL GLY GLY HIS SEQRES 3 A 312 ASN LEU TYR PRO ASN LEU ASN GLU GLU THR GLY LYS GLU SEQRES 4 A 312 LEU VAL ARG GLU ALA ILE ARG ASN GLY VAL THR MSE LEU SEQRES 5 A 312 ASP THR ALA TYR ILE TYR GLY ILE GLY ARG SER GLU GLU SEQRES 6 A 312 LEU ILE GLY GLU VAL LEU ARG GLU PHE ASN ARG GLU ASP SEQRES 7 A 312 VAL VAL ILE ALA THR LYS ALA ALA HIS ARG LYS GLN GLY SEQRES 8 A 312 ASN ASP PHE VAL PHE ASP ASN SER PRO ASP PHE LEU LYS SEQRES 9 A 312 LYS SER VAL ASP GLU SER LEU LYS ARG LEU ASN THR ASP SEQRES 10 A 312 TYR ILE ASP LEU PHE TYR ILE HIS PHE PRO ASP GLU HIS SEQRES 11 A 312 THR PRO LYS ASP GLU ALA VAL ASN ALA LEU ASN GLU MSE SEQRES 12 A 312 LYS LYS ALA GLY LYS ILE ARG SER ILE GLY VAL SER ASN SEQRES 13 A 312 PHE SER LEU GLU GLN LEU LYS GLU ALA ASN LYS ASP GLY SEQRES 14 A 312 LEU VAL ASP VAL LEU GLN GLY GLU TYR ASN LEU LEU ASN SEQRES 15 A 312 ARG GLU ALA GLU LYS THR PHE PHE PRO TYR THR LYS GLU SEQRES 16 A 312 HIS ASN ILE SER PHE ILE PRO TYR PHE PRO LEU VAL SER SEQRES 17 A 312 GLY LEU LEU ALA GLY LYS TYR THR GLU ASP THR THR PHE SEQRES 18 A 312 PRO GLU GLY ASP LEU ARG ASN GLU GLN GLU HIS PHE LYS SEQRES 19 A 312 GLY GLU ARG PHE LYS GLU ASN ILE ARG LYS VAL ASN LYS SEQRES 20 A 312 LEU ALA PRO ILE ALA GLU LYS HIS ASN VAL ASP ILE PRO SEQRES 21 A 312 HIS ILE VAL LEU ALA TRP TYR LEU ALA ARG PRO GLU ILE SEQRES 22 A 312 ASP ILE LEU ILE PRO GLY ALA LYS ARG ALA ASP GLN LEU SEQRES 23 A 312 ILE ASP ASN ILE LYS THR ALA ASP VAL THR LEU SER GLN SEQRES 24 A 312 GLU ASP ILE SER PHE ILE ASP LYS LEU PHE ALA PRO GLY

MODRES 1PZ0 MSE A 51 MET SELENOMETHIONINE MODRES 1PZ0 MSE A 143 MET SELENOMETHIONINE

HET MSE A 51 8 HET MSE A 143 8 HET NA A 314 1 HET NAP A 313 48

HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE

FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *210(H2 O)

HELIX 1 1 ASN A 33 ASN A 47 1 15 HELIX 2 2 ILE A 57 ILE A 60 5 4 HELIX 3 3 GLY A 61 ARG A 72 1 12 HELIX 4 4 GLU A 73 PHE A 74 5 2 HELIX 5 5 ASN A 75 VAL A 79 5 5 HELIX 6 6 SER A 99 ASN A 115 1 17 HELIX 7 7 PRO A 132 ALA A 146 1 15 HELIX 8 8 SER A 158 ASN A 166 1 9 HELIX 9 9 GLU A 184 PHE A 189 1 6 HELIX 10 10 PHE A 189 HIS A 196 1 8 HELIX 11 11 GLY A 209 GLY A 213 5 5 HELIX 12 12 ASP A 225 GLN A 230 5 6 HELIX 13 13 LYS A 234 ASN A 246 1 13 HELIX 14 14 LEU A 248 HIS A 255 1 8 HELIX 15 15 ASP A 258 ARG A 270 1 13 HELIX 16 16 ARG A 282 ILE A 290 1 9 HELIX 17 17 LYS A 291 VAL A 295 5 5 HELIX 18 18 SER A 298 PHE A 309 1 12

SHEET 1 A 2 ALA A 4 LYS A 5 0 SHEET 2 A 2 GLN A 12 VAL A 13 -1 O VAL A 13 N ALA A 4 SHEET 1 B 7 LEU A 18 GLY A 19 0 SHEET 2 B 7 MSE A 51 ASP A 53 1 O ASP A 53 N LEU A 18 SHEET 3 B 7 VAL A 80 ALA A 85 1 O VAL A 80 N LEU A 52 SHEET 4 B 7 LEU A 121 ILE A 124 1 O TYR A 123 N THR A 83 SHEET 5 B 7 ILE A 152 SER A 155 1 O GLY A 153 N PHE A 122 SHEET 6 B 7 VAL A 173 GLU A 177 1 O VAL A 173 N VAL A 154 SHEET 7 B 7 SER A 199 TYR A 203 1 O ILE A 201 N LEU A 174 SHEET 1 C 2 HIS A 87 LYS A 89 0 SHEET 2 C 2 PHE A 94 PHE A 96 -1 O VAL A 95 N ARG A 88

LINK C THR A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N LEU A 52 1555 1555 1.33 LINK C GLU A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N LYS A 144 1555 1555 1.33 LINK NA NA A 314 O ARG A 270 1555 1555 2.52 LINK NA NA A 314 O HOH A 406 1555 1555 2.60 LINK NA NA A 314 O LEU A 268 1555 1555 2.59 LINK O ILE A 273 NA NA A 314 1555 1555 2.63 LINK NA NA A 314 O HOH A 418 1555 1555 2.62 LINK NA NA A 314 O HOH A 337 1555 1555 2.75

SITE 1 AC1 6 LEU A 268 ARG A 270 ILE A 273 HOH A 337 SITE 2 AC1 6 HOH A 406 HOH A 418 SITE 1 AC2 21 TYR A 58 HIS A 125 SER A 155 ASN A 156 SITE 2 AC2 21 GLN A 175 TYR A 203 PHE A 204 PRO A 205 SITE 3 AC2 21 LEU A 206 VAL A 207 SER A 208 GLY A 209 SITE 4 AC2 21 ALA A 212 LYS A 214 PRO A 260 HOH A 320 SITE 5 AC2 21 HOH A 330 HOH A 332 HOH A 363 HOH A 453 SITE 6 AC2 21 HOH A 460

CRYST1 45.525 84.262 93.953 90.00 90.00 90.00 P 21 21 21 4

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.021966 0.000000 0.000000 0.00000

SCALE2 0.000000 0.011868 0.000000 0.00000

SCALE3 0.000000 0.000000 0.010644 0.00000