10 20 30 40 50 60 70 80 1PUL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-03 1PUL
TITLE SOLUTION STRUCTURE FOR THE 21KDA CAENORHABDITIS ELEGANS TITLE 2 PROTEIN CE32E8.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET WR33
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN C32E8.3 IN CHROMOSOME I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: C32E8.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-WR33
KEYWDS ALPHA HELICAL, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NESG, STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR R.TEJERO,J.M.ARAMINI,G.V.T.SWAPNA,D.MONLEON,Y.CHIANG, AUTHOR 2 D.MACAPAGAL,K.C.GUNSALUS,S.KIM,T.SZYPERSKI,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 3 24-FEB-09 1PUL 1 VERSN REVDAT 2 18-APR-06 1PUL 1 AUTHOR REVDAT 1 21-JUN-05 1PUL 0
JRNL AUTH D.MONLEON,Y.CHIANG,J.M.ARAMINI,G.V.SWAPNA, JRNL AUTH 2 D.MACAPAGAL,K.C.GUNSALUS,S.KIM,T.SZYPERSKI, JRNL AUTH 3 G.T.MONTELIONE JRNL TITL BACKBONE 1H, 15N AND 13C ASSIGNMENTS FOR THE 21 JRNL TITL 2 KDA CAENORHABDITIS ELEGANS HOMOLOGUE OF JRNL TITL 3 "BRAIN-SPECIFIC" PROTEIN. JRNL REF J.BIOMOL.NMR V. 28 91 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 14739645 JRNL DOI 10.1023/B:JNMR.0000012832.71049.BF
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AUTOSTRUCTURE 2.1.0, CNS 1.1 REMARK 3 AUTHORS : GUNTERT (DYANA), HUANG, MONTELIONE REMARK 3 (AUTOSTRUCTURE), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 729 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 260 DIHEDRAL ANGLE CONSTRAINTS, AND 50 HYDROGEN REMARK 3 BOND CONSTRAINTS (9.3 CONSTRAINTS PER RESIDUE; 1.2 LONG-RANGE REMARK 3 CONSTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS REMARK 3 PERFORMED ITERATIVELY USING AUTOSTRUCTURE (DYANA). THE 10 REMARK 3 STRUCTURES WITH THE LOWEST TARGET FUNCTION WERE FURTHER REMARK 3 REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION REMARK 3 IN EXPLICIT WATER (CNS). THE UNSTRUCTURED N- (1 TO 17) AND C- REMARK 3 (121 TO 125) TERMINAL REGIONS OF THE MOLECULE ARE OMITTED FROM REMARK 3 THIS DEPOSITION.
REMARK 4 REMARK 4 1PUL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019579.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM WR33 U-15N,13C; 20MM REMARK 210 NAH2PO4, 50MM NACL, 10MM DTT, REMARK 210 0.02% AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY, 3D 13C-NOESY, REMARK 210 2D 15N,1H HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, NMRPIPE 2.1, REMARK 210 SPARKY 3.106, AUTOASSIGN REMARK 210 1.11.0, TALOS 2.1, PSVS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. AUTOMATIC BACKBONE ASSIGNMENTS WERE MADE USING REMARK 210 AUTOASSIGN. MANUAL SIDE CHAIN ASSIGNMENTS. AUTOMATIC NOESY REMARK 210 ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN BOND CONSTRAINTS REMARK 210 WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL ANGLE REMARK 210 CONSTRAINTS WERE DETERMINED USING HYPER AND TALOS. FINAL REMARK 210 STRUCTURE QUALITY FACTORS FOR THE ENSEMBLE (RESIDUES 18 TO REMARK 210 120), WHERE ORDERED RESIDUES [S(PHI) + S(PSI) > 1.8] COMPRISE REMARK 210 19-33,42-56,61-62,64-74,77-79,83-119: (A) RMSD FOR ORDERED REMARK 210 RESIDUES: BB, 1.2; HEAVY ATOM, 1.7 (B) RAMACHANDRAN STATISTICS REMARK 210 FOR ORDERED RESIDUES: MOST FAVORED: 93.0%; ADDITIONALLY REMARK 210 ALLOWED: 5.7%; GENEROUSLY ALLOWED, 0.8%; DISALLOWED, 0.5% (C) REMARK 210 PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z-): BB, 0.20/1.10; REMARK 210 ALL, -0.02/-0.12. (D) MAGE MOLPROBITY CLASH SCORE (RAW/Z-): REMARK 210 33.54/-4.23. (E) RPF SCORES FOR GOODNESS OF FIT TO NOESY DATA: REMARK 210 F-MEASURE, 0.834; RECALL, 0.900; PRECISION, 0.776; DP-SCORE, REMARK 210 0.606.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 SER A 123 REMARK 465 VAL A 124 REMARK 465 GLY A 125
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 38 74.85 -107.30 REMARK 500 1 ALA A 39 93.65 -161.05 REMARK 500 1 THR A 40 61.39 61.66 REMARK 500 1 PRO A 77 -168.48 -69.49 REMARK 500 1 LYS A 79 -75.25 -67.39 REMARK 500 1 LYS A 80 -167.39 179.54 REMARK 500 1 ALA A 81 -118.09 -149.51 REMARK 500 1 THR A 82 -167.30 -168.12 REMARK 500 1 LYS A 103 -52.27 105.28 REMARK 500 2 PHE A 34 -152.34 -89.36 REMARK 500 2 ALA A 39 42.45 -85.45 REMARK 500 2 GLU A 41 148.45 -172.01 REMARK 500 2 THR A 75 -86.38 -130.02 REMARK 500 2 LYS A 80 -152.11 56.97 REMARK 500 2 ALA A 81 -94.91 -117.45 REMARK 500 2 THR A 82 -139.70 163.99 REMARK 500 2 SER A 101 -76.19 -80.94 REMARK 500 2 LYS A 102 -76.03 -100.99 REMARK 500 2 LYS A 103 -54.18 173.04 REMARK 500 3 ALA A 36 129.82 172.67 REMARK 500 3 THR A 38 21.15 -159.19 REMARK 500 3 ASN A 59 -6.28 70.55 REMARK 500 3 THR A 75 110.69 174.24 REMARK 500 3 ALA A 81 -92.74 -146.34 REMARK 500 3 THR A 82 -175.85 172.32 REMARK 500 3 SER A 101 -60.08 -93.49 REMARK 500 3 LYS A 103 -64.31 103.07 REMARK 500 4 ALA A 36 153.74 179.39 REMARK 500 4 THR A 38 -88.32 -139.55 REMARK 500 4 ASP A 58 69.87 -165.16 REMARK 500 4 ASN A 59 -69.02 -103.23 REMARK 500 4 LYS A 60 -48.73 177.54 REMARK 500 4 LYS A 80 173.45 77.44 REMARK 500 4 THR A 82 -157.11 -100.39 REMARK 500 4 SER A 101 -65.03 -100.45 REMARK 500 4 LYS A 102 -76.74 -101.70 REMARK 500 4 LYS A 103 -54.89 163.16 REMARK 500 5 ALA A 36 68.39 61.73 REMARK 500 5 LEU A 57 -165.93 -79.38 REMARK 500 5 ASP A 58 82.15 -63.66 REMARK 500 5 LYS A 60 -78.71 -134.47 REMARK 500 5 THR A 75 115.55 177.02 REMARK 500 5 ALA A 81 -84.75 -108.45 REMARK 500 5 THR A 82 -164.60 177.95 REMARK 500 5 GLU A 85 -72.84 -41.75 REMARK 500 5 SER A 101 -75.66 -100.58 REMARK 500 5 LYS A 103 -59.10 101.90 REMARK 500 5 LEU A 119 32.05 -69.10 REMARK 500 6 LYS A 33 -79.45 -93.56 REMARK 500 6 ASP A 58 76.11 51.95 REMARK 500 6 ASN A 59 70.20 -164.65 REMARK 500 6 LYS A 60 -59.73 74.70 REMARK 500 6 THR A 63 -152.51 -104.22 REMARK 500 6 THR A 75 -46.45 -178.18 REMARK 500 6 LYS A 80 165.53 175.17 REMARK 500 6 ALA A 81 -64.02 -145.82 REMARK 500 6 THR A 82 -150.64 -153.37 REMARK 500 6 ASP A 96 -70.59 -46.14 REMARK 500 6 LYS A 102 -77.44 -101.72 REMARK 500 6 LYS A 103 -52.30 160.53 REMARK 500 7 LYS A 33 -77.86 -117.69 REMARK 500 7 GLU A 41 -165.08 -177.67 REMARK 500 7 ASP A 58 100.97 64.62 REMARK 500 7 ASN A 59 -48.96 -153.38 REMARK 500 7 LYS A 60 -63.44 -171.04 REMARK 500 7 THR A 75 99.37 -175.67 REMARK 500 7 LYS A 80 174.54 72.55 REMARK 500 7 ALA A 81 -81.99 -128.21 REMARK 500 7 THR A 82 -154.46 169.89 REMARK 500 7 LYS A 102 -76.97 -100.73 REMARK 500 7 LYS A 103 -58.47 167.10 REMARK 500 7 LEU A 119 31.68 -79.78 REMARK 500 8 ASP A 58 -94.99 -121.13 REMARK 500 8 ASN A 59 -45.73 165.12 REMARK 500 8 THR A 75 -22.15 178.49 REMARK 500 8 THR A 82 -157.98 -117.97 REMARK 500 8 PHE A 83 -71.51 -39.15 REMARK 500 8 LYS A 103 -70.23 97.09 REMARK 500 9 PHE A 34 -78.25 -109.39 REMARK 500 9 ALA A 36 170.65 177.09 REMARK 500 9 THR A 40 -37.35 -155.56 REMARK 500 9 ASP A 58 -75.89 -123.10 REMARK 500 9 ASN A 59 18.28 56.98 REMARK 500 9 LYS A 60 -46.36 73.45 REMARK 500 9 THR A 75 -74.70 -93.54 REMARK 500 9 PRO A 77 -175.25 -68.42 REMARK 500 9 LYS A 79 -72.27 -43.16 REMARK 500 9 LYS A 80 -108.79 171.49 REMARK 500 9 ALA A 81 110.81 -165.29 REMARK 500 9 SER A 101 -66.99 -97.64 REMARK 500 9 LYS A 102 -77.06 -101.11 REMARK 500 9 LYS A 103 -60.15 169.10 REMARK 500 9 LEU A 119 26.53 -76.54 REMARK 500 10 TRP A 19 92.32 -57.02 REMARK 500 10 ALA A 36 148.94 169.58 REMARK 500 10 THR A 38 86.95 -153.68 REMARK 500 10 ALA A 39 75.79 -160.41 REMARK 500 10 ASN A 59 -46.62 69.69 REMARK 500 10 THR A 75 -77.32 -76.36 REMARK 500 10 THR A 82 -177.52 -60.39 REMARK 500 10 PHE A 83 -71.59 -48.13 REMARK 500 10 SER A 101 -75.42 -74.20 REMARK 500 10 LYS A 102 -76.66 -101.81 REMARK 500 10 LYS A 103 -40.27 170.12 REMARK 500 10 LEU A 119 30.22 -94.29 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: WR33 RELATED DB: TARGETDB
DBREF 1PUL A 11 125 UNP P91127 YBYK_CAEEL 1 115
SEQADV 1PUL MET A 1 UNP P91127 EXPRESSION TAG SEQADV 1PUL GLY A 2 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 3 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 4 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 5 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 6 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 7 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 8 UNP P91127 EXPRESSION TAG SEQADV 1PUL SER A 9 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 10 UNP P91127 EXPRESSION TAG
SEQRES 1 A 125 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA ALA SEQRES 2 A 125 ALA ALA GLY PHE ASN TRP ASP ASP ALA ASP VAL LYS LYS SEQRES 3 A 125 ARG TRP ASP ALA PHE THR LYS PHE GLY ALA ALA THR ALA SEQRES 4 A 125 THR GLU MET THR GLY LYS ASN PHE ASP LYS TRP LEU LYS SEQRES 5 A 125 ASP ALA GLY VAL LEU ASP ASN LYS ALA ILE THR GLY THR SEQRES 6 A 125 MET THR GLY ILE ALA PHE SER LYS VAL THR GLY PRO LYS SEQRES 7 A 125 LYS LYS ALA THR PHE ASP GLU THR LYS LYS VAL LEU ALA SEQRES 8 A 125 PHE VAL ALA GLU ASP ARG ALA ARG GLN SER LYS LYS PRO SEQRES 9 A 125 ILE GLN ASP GLU LEU ASP ALA ILE THR GLU LYS LEU ALA SEQRES 10 A 125 LYS LEU GLU ALA PRO SER VAL GLY
HELIX 1 1 ASP A 20 GLY A 35 1 16 HELIX 2 2 THR A 43 GLY A 55 1 13 HELIX 3 3 THR A 63 THR A 75 1 13 HELIX 4 4 THR A 82 LYS A 102 1 21 HELIX 5 5 PRO A 104 LEU A 119 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000