1PQK - Header Asymmetric Unit

HEADER HYDROLASE 18-JUN-03 1PQK

TITLE REPACKING OF THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RR1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHS1403

KEYWDS HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, DESIGNED CORE MUTANT, KEYWDS 2 AUTOMATED PROTEIN DESIGN, PROTEIN ENGINEERING, PROTEIN KEYWDS 3 FOLDING, PROTEIN STABILITY, CORE REPACKING, BACK REVERTANT, KEYWDS 4 DEAD-END ELIMINATION THEOREM, SIDE-CHAIN PACKING, OPTIMIZED KEYWDS 5 ROTAMER COMBINATIONS, ORBIT

EXPDTA X-RAY DIFFRACTION

AUTHOR B.H.MOOERS,D.DATTA,W.A.BAASE,E.S.ZOLLARS,S.L.MAYO, AUTHOR 2 B.W.MATTHEWS

REVDAT 2 24-FEB-09 1PQK 1 VERSN REVDAT 1 07-OCT-03 1PQK 0

JRNL AUTH B.H.MOOERS,D.DATTA,W.A.BAASE,E.S.ZOLLARS,S.L.MAYO, JRNL AUTH 2 B.W.MATTHEWS JRNL TITL REPACKING THE CORE OF T4 LYSOZYME BY AUTOMATED JRNL TITL 2 DESIGN JRNL REF J.MOL.BIOL. V. 332 741 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12963380 JRNL DOI 10.1016/S0022-2836(03)00856-8

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38780 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.020 REMARK 3 FREE R VALUE TEST SET COUNT : 986 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1800 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1770 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 0.02 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 986 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 38780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 20.378 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.184 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : TNT REMARK 3 KSOL : 0.93 REMARK 3 BSOL : 292.68 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1PQK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019505.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.702 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : 0.18800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM PHOSPHATE, SODIUM REMARK 280 PHOSPHATE, NACL, BME, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K, PH 6.70

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.11500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.11500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 77 CB REMARK 470 ALA B 77 CB REMARK 470 ALA C 77 CB

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 22 CD GLU A 22 OE2 0.076 REMARK 500 GLU A 62 CD GLU A 62 OE2 0.067 REMARK 500 GLU A 64 CD GLU A 64 OE2 0.073 REMARK 500 GLU A 128 CD GLU A 128 OE2 0.075 REMARK 500 GLU B 22 CD GLU B 22 OE2 0.079 REMARK 500 GLU B 62 CD GLU B 62 OE2 0.077 REMARK 500 GLU C 5 CD GLU C 5 OE2 0.069 REMARK 500 GLU C 45 CD GLU C 45 OE2 0.068 REMARK 500 GLU C 108 CD GLU C 108 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP B 10 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 10 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 61 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 61 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP B 70 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 70 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP B 92 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 92 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 127 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP C 47 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 76 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP C 92 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP C 92 CB - CG - OD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP C 127 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG C 137 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG C 154 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 68.58 -102.42 REMARK 500 ILE B 29 78.44 -106.74 REMARK 500 ASP C 20 -164.70 -69.95 REMARK 500 ASN C 55 26.12 49.09 REMARK 500 ARG C 125 75.95 -106.63 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 453 DISTANCE = 5.07 ANGSTROMS

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P2L RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT V87I/TA REMARK 900 RELATED ID: 1P2R RELATED DB: PDB REMARK 900 REPACKING OF THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN REMARK 900 RELATED ID: 1P36 RELATED DB: PDB REMARK 900 REPACKING OF THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN REMARK 900 RELATED ID: 1P37 RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING BACK-REVERTANT L102M/CORE10 REMARK 900 RELATED ID: 1P3N RELATED DB: PDB REMARK 900 CORE REDESIGN BACK-REVERTANT I103V/CORE10 REMARK 900 RELATED ID: 1P64 RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT L133F/TA REMARK 900 RELATED ID: 1P6Y RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT M120Y/TA REMARK 900 RELATED ID: 1P7S RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT V103I/TA REMARK 900 RELATED ID: 1PQD RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT CORE10/TA REMARK 900 RELATED ID: 1PQI RELATED DB: PDB REMARK 900 REPACKING THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN REMARK 900 RELATED ID: 1PQJ RELATED DB: PDB REMARK 900 REPACKING OF THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN REMARK 900 RELATED ID: 1PQM RELATED DB: PDB REMARK 900 T4 LYSOZYME CORE REPACKING MUTANT V149I/T152V/TA

DBREF 1PQK A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 1PQK B 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 1PQK C 1 164 UNP P00720 LYS_BPT4 1 164

SEQADV 1PQK THR A 54 UNP P00720 CYS 54 ENGINEERED SEQADV 1PQK ALA A 77 UNP P00720 GLY 77 ENGINEERED SEQADV 1PQK VAL A 78 UNP P00720 ILE 78 ENGINEERED SEQADV 1PQK ALA A 97 UNP P00720 CYS 97 ENGINEERED SEQADV 1PQK ILE A 118 UNP P00720 LEU 118 ENGINEERED SEQADV 1PQK TYR A 120 UNP P00720 MET 120 ENGINEERED SEQADV 1PQK PHE A 133 UNP P00720 LEU 133 ENGINEERED SEQADV 1PQK ILE A 149 UNP P00720 VAL 149 ENGINEERED SEQADV 1PQK VAL A 152 UNP P00720 THR 152 ENGINEERED SEQADV 1PQK THR B 54 UNP P00720 CYS 54 ENGINEERED SEQADV 1PQK ALA B 77 UNP P00720 GLY 77 ENGINEERED SEQADV 1PQK VAL B 78 UNP P00720 ILE 78 ENGINEERED SEQADV 1PQK ALA B 97 UNP P00720 CYS 97 ENGINEERED SEQADV 1PQK ILE B 118 UNP P00720 LEU 118 ENGINEERED SEQADV 1PQK TYR B 120 UNP P00720 MET 120 ENGINEERED SEQADV 1PQK PHE B 133 UNP P00720 LEU 133 ENGINEERED SEQADV 1PQK ILE B 149 UNP P00720 VAL 149 ENGINEERED SEQADV 1PQK VAL B 152 UNP P00720 THR 152 ENGINEERED SEQADV 1PQK THR C 54 UNP P00720 CYS 54 ENGINEERED SEQADV 1PQK ALA C 77 UNP P00720 GLY 77 ENGINEERED SEQADV 1PQK VAL C 78 UNP P00720 ILE 78 ENGINEERED SEQADV 1PQK ALA C 97 UNP P00720 CYS 97 ENGINEERED SEQADV 1PQK ILE C 118 UNP P00720 LEU 118 ENGINEERED SEQADV 1PQK TYR C 120 UNP P00720 MET 120 ENGINEERED SEQADV 1PQK PHE C 133 UNP P00720 LEU 133 ENGINEERED SEQADV 1PQK ILE C 149 UNP P00720 VAL 149 ENGINEERED SEQADV 1PQK VAL C 152 UNP P00720 THR 152 ENGINEERED

SEQRES 1 A 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 A 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 A 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG ALA VAL SEQRES 7 A 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 A 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 A 164 ILE ARG TYR LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 164 VAL ASN PHE ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 A 164 ASN ARG ALA LYS ARG ILE ILE THR VAL PHE ARG THR GLY SEQRES 13 A 164 THR TRP ASP ALA TYR LYS ASN LEU SEQRES 1 B 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 B 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 B 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG ALA VAL SEQRES 7 B 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 B 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 B 164 ILE ARG TYR LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 164 VAL ASN PHE ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 B 164 ASN ARG ALA LYS ARG ILE ILE THR VAL PHE ARG THR GLY SEQRES 13 B 164 THR TRP ASP ALA TYR LYS ASN LEU SEQRES 1 C 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 C 164 ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR SEQRES 3 C 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU SEQRES 4 C 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 C 164 ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 C 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG ALA VAL SEQRES 7 C 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 C 164 ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE SEQRES 9 C 164 GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER SEQRES 10 C 164 ILE ARG TYR LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 C 164 VAL ASN PHE ALA LYS SER ARG TRP TYR ASN GLN THR PRO SEQRES 12 C 164 ASN ARG ALA LYS ARG ILE ILE THR VAL PHE ARG THR GLY SEQRES 13 C 164 THR TRP ASP ALA TYR LYS ASN LEU

FORMUL 4 HOH *352(H2 O)

HELIX 1 1 ASN A 2 GLY A 12 1 11 HELIX 2 2 SER A 38 GLY A 51 1 14 HELIX 3 3 THR A 59 ASN A 81 1 23 HELIX 4 4 LYS A 83 LEU A 91 1 9 HELIX 5 5 ASP A 92 GLY A 113 1 22 HELIX 6 6 PHE A 114 GLN A 123 1 10 HELIX 7 7 ARG A 125 LYS A 135 1 11 HELIX 8 8 SER A 136 THR A 142 1 7 HELIX 9 9 THR A 142 GLY A 156 1 15 HELIX 10 10 ASN B 2 GLY B 12 1 11 HELIX 11 11 SER B 38 GLY B 51 1 14 HELIX 12 12 THR B 59 ASN B 81 1 23 HELIX 13 13 LEU B 84 LEU B 91 1 8 HELIX 14 14 ASP B 92 GLY B 113 1 22 HELIX 15 15 PHE B 114 GLN B 123 1 10 HELIX 16 16 ARG B 125 LYS B 135 1 11 HELIX 17 17 SER B 136 THR B 142 1 7 HELIX 18 18 THR B 142 GLY B 156 1 15 HELIX 19 19 TRP B 158 ASN B 163 1 6 HELIX 20 20 ASN C 2 GLY C 12 1 11 HELIX 21 21 SER C 38 GLY C 51 1 14 HELIX 22 22 THR C 59 ASN C 81 1 23 HELIX 23 23 LEU C 84 LEU C 91 1 8 HELIX 24 24 ASP C 92 GLY C 113 1 22 HELIX 25 25 PHE C 114 GLN C 123 1 10 HELIX 26 26 ARG C 125 LYS C 135 1 11 HELIX 27 27 SER C 136 THR C 142 1 7 HELIX 28 28 THR C 142 GLY C 156 1 15 HELIX 29 29 TRP C 158 LYS C 162 5 5

SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 LEU A 32 -1 O HIS A 31 N ILE A 27 SHEET 1 B 3 ARG B 14 LYS B 19 0 SHEET 2 B 3 TYR B 25 GLY B 28 -1 O GLY B 28 N ARG B 14 SHEET 3 B 3 HIS B 31 THR B 34 -1 O LEU B 33 N TYR B 25 SHEET 1 C 3 ARG C 14 LYS C 19 0 SHEET 2 C 3 TYR C 25 GLY C 28 -1 O THR C 26 N TYR C 18 SHEET 3 C 3 HIS C 31 THR C 34 -1 O HIS C 31 N ILE C 27

CRYST1 156.230 67.280 61.650 90.00 112.43 90.00 C 1 2 1 12

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.006401 0.000000 0.002642 0.00000

SCALE2 0.000000 0.014863 0.000000 0.00000

SCALE3 0.000000 0.000000 0.017548 0.00000