10 20 30 40 50 60 70 80 1PMH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 11-JUN-03 1PMH
TITLE CRYSTAL STRUCTURE OF CALDICELLULOSIRUPTOR SACCHAROLYTICUS TITLE 2 CBM27-1 IN COMPLEX WITH MANNOHEXAOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,4-MANNANASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE; COMPND 5 SYNONYM: CSCBM27-1; COMPND 6 EC: 3.2.1.78; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR SACCHAROLYTICUS; SOURCE 3 ORGANISM_TAXID: 44001; SOURCE 4 STRAIN: RT8B.4; SOURCE 5 GENE: MANA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX HTC
KEYWDS JELLYROLL BETA-SANDWICH, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.ROSKE,A.SUNNA,U.HEINEMANN
REVDAT 3 24-FEB-09 1PMH 1 VERSN REVDAT 2 31-AUG-04 1PMH 1 JRNL REVDAT 1 22-JUN-04 1PMH 0
JRNL AUTH Y.ROSKE,A.SUNNA,W.PFEIL,U.HEINEMANN JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF JRNL TITL 2 CALDICELLULOSIRUPTOR STRAIN RT8B.4 JRNL TITL 3 CARBOHYDRATE-BINDING MODULE CBM27-1 AND ITS JRNL TITL 4 COMPLEX WITH MANNOHEXAOSE. JRNL REF J.MOL.BIOL. V. 340 543 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15210353 JRNL DOI 10.1016/J.JMB.2004.04.072
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 80596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3940 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.469 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1662 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1430 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2250 ; 2.070 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3360 ; 1.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 7.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1727 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 319 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 295 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1618 ; 0.267 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 912 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.366 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.354 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 918 ; 2.948 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1500 ; 3.945 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 744 ; 5.328 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 750 ; 6.779 ; 7.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1662 ; 2.775 ; 2.500 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 283 ;15.470 ; 4.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1624 ; 9.375 ; 4.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1PMH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019426.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-03; 30-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 110.0; 110.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.2; 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795; 0.97981 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, ISOPROPANOL, NA-HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283.15K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.14050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.05650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.05650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.14050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU X 1 REMARK 465 SER X 2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS X 114 O HOH X 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN X 76 O HOH X 413 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 49 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS X 28 -106.26 59.60 REMARK 500 ASN X 44 88.80 -154.38 REMARK 500 TRP X 60 79.04 -151.83 REMARK 500 TRP X 113 83.40 58.12 REMARK 500 ALA X 156 39.78 -92.00 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 631 DISTANCE = 5.27 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR X 46 O REMARK 620 2 ASP X 176 OD1 95.5 REMARK 620 3 ASP X 176 OD2 83.2 50.7 REMARK 620 4 ASP X 10 O 98.2 75.6 125.9 REMARK 620 5 GLU X 12 OE2 83.8 158.4 149.6 83.1 REMARK 620 6 HOH X 432 O 169.7 89.8 93.4 91.7 94.6 REMARK 620 7 ASN X 44 OD1 89.7 124.3 75.3 158.0 77.3 80.1 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN X 186 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA X 187 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA X 188 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA X 189 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA X 190 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA X 191 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 300 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 401 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 402 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 403 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 404
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PMJ RELATED DB: PDB REMARK 900 THE SAME CARBOHYDRATE BINDING MODULE WITHOUT MANNOHEXAOSE
REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHOR THERE IS A MISTAKE REMARK 999 IN THE SEQUENCE DATABASE
DBREF 1PMH X 1 185 GB 1491795 AAC44232 36 220
SEQADV 1PMH MSE X 17 GB 1491795 MET 52 MODIFIED RESIDUE SEQADV 1PMH ILE X 69 GB 1491795 PHE 104 SEE REMARK 999 SEQADV 1PMH MSE X 89 GB 1491795 MET 124 MODIFIED RESIDUE SEQADV 1PMH ALA X 104 GB 1491795 PRO 139 SEE REMARK 999
SEQRES 1 X 185 GLU SER SER VAL ASN PRO VAL VAL LEU ASP PHE GLU ASP SEQRES 2 X 185 GLY THR VAL MSE SER PHE GLY GLU ALA TRP GLY ASP SER SEQRES 3 X 185 LEU LYS CYS ILE LYS LYS VAL SER VAL SER GLN ASP LEU SEQRES 4 X 185 GLN ARG PRO GLY ASN LYS TYR ALA LEU ARG LEU ASP VAL SEQRES 5 X 185 GLU PHE ASN PRO ASN ASN GLY TRP ASP GLN GLY ASP LEU SEQRES 6 X 185 GLY THR TRP ILE GLY GLY VAL VAL GLU GLY GLN PHE ASP SEQRES 7 X 185 PHE THR GLY TYR LYS SER VAL GLU PHE GLU MSE PHE ILE SEQRES 8 X 185 PRO TYR ASP GLU PHE SER LYS SER GLN GLY GLY PHE ALA SEQRES 9 X 185 TYR LYS VAL VAL ILE ASN ASP GLY TRP LYS GLU LEU GLY SEQRES 10 X 185 SER GLU PHE ASN ILE THR ALA ASN ALA GLY LYS LYS VAL SEQRES 11 X 185 LYS ILE ASN GLY LYS ASP TYR THR VAL ILE HIS LYS ALA SEQRES 12 X 185 PHE ALA ILE PRO GLU ASP PHE ARG THR LYS LYS ARG ALA SEQRES 13 X 185 GLN LEU VAL PHE GLN PHE ALA GLY GLN ASN SER ASN TYR SEQRES 14 X 185 LYS GLY PRO ILE TYR LEU ASP ASN VAL ARG ILE ARG PRO SEQRES 15 X 185 GLU ASP ALA
MODRES 1PMH MSE X 17 MET SELENOMETHIONINE MODRES 1PMH MSE X 89 MET SELENOMETHIONINE
HET MSE X 17 8 HET MSE X 89 8 HET MAN X 186 12 HET BMA X 187 11 HET BMA X 188 11 HET BMA X 189 11 HET BMA X 190 13 HET BMA X 191 22 HET CA X 300 1 HET EDO X 401 4 HET EDO X 402 4 HET EDO X 403 4 HET EDO X 404 4
HETNAM MSE SELENOMETHIONINE HETNAM MAN ALPHA-D-MANNOSE HETNAM BMA BETA-D-MANNOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 MAN C6 H12 O6 FORMUL 2 BMA 5(C6 H12 O6) FORMUL 3 CA CA 2+ FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *279(H2 O)
HELIX 1 1 GLY X 70 VAL X 72 5 3 HELIX 2 2 TYR X 93 SER X 99 1 7 HELIX 3 3 PRO X 147 ARG X 151 5 5
SHEET 1 A 4 VAL X 7 LEU X 9 0 SHEET 2 A 4 LYS X 170 ARG X 181 -1 O VAL X 178 N LEU X 9 SHEET 3 A 4 ALA X 47 GLU X 53 -1 N LEU X 50 O ILE X 173 SHEET 4 A 4 ILE X 30 SER X 36 -1 N SER X 34 O ARG X 49 SHEET 1 B 5 VAL X 7 LEU X 9 0 SHEET 2 B 5 LYS X 170 ARG X 181 -1 O VAL X 178 N LEU X 9 SHEET 3 B 5 SER X 84 PRO X 92 -1 N PHE X 90 O TYR X 174 SHEET 4 B 5 LYS X 135 ALA X 145 -1 O THR X 138 N ILE X 91 SHEET 5 B 5 LYS X 128 ILE X 132 -1 N ILE X 132 O LYS X 135 SHEET 1 C 5 GLY X 20 GLU X 21 0 SHEET 2 C 5 ASP X 61 TRP X 68 -1 O GLY X 66 N GLY X 20 SHEET 3 C 5 GLN X 157 GLY X 164 -1 O PHE X 160 N LEU X 65 SHEET 4 C 5 PHE X 103 ILE X 109 -1 N VAL X 108 O VAL X 159 SHEET 5 C 5 LYS X 114 ILE X 122 -1 O ILE X 122 N PHE X 103 SHEET 1 D 2 GLN X 76 ASP X 78 0 SHEET 2 D 2 LYS X 153 ARG X 155 -1 O LYS X 154 N PHE X 77
LINK O4 MAN X 186 C1 BMA X 187 1555 1555 1.42 LINK O4 BMA X 187 C1 BMA X 188 1555 1555 1.40 LINK O4 BMA X 188 C1 BMA X 189 1555 1555 1.39 LINK O4 BMA X 189 C1 BMA X 190 1555 1555 1.44 LINK O4 BMA X 190 C1 ABMA X 191 1555 1555 1.46 LINK O4 BMA X 190 C1 BBMA X 191 1555 1555 1.45 LINK C VAL X 16 N MSE X 17 1555 1555 1.34 LINK C MSE X 17 N SER X 18 1555 1555 1.32 LINK C GLU X 88 N MSE X 89 1555 1555 1.32 LINK C MSE X 89 N PHE X 90 1555 1555 1.34 LINK CA CA X 300 O TYR X 46 1555 1555 2.28 LINK CA CA X 300 OD1 ASP X 176 1555 1555 2.49 LINK CA CA X 300 OD2 ASP X 176 1555 1555 2.55 LINK CA CA X 300 O ASP X 10 1555 1555 2.36 LINK CA CA X 300 OE2 GLU X 12 1555 1555 2.37 LINK CA CA X 300 O HOH X 432 1555 1555 2.32 LINK CA CA X 300 OD1 ASN X 44 1555 1555 2.37
SITE 1 AC1 11 ASP X 111 GLY X 112 ARG X 155 BMA X 187 SITE 2 AC1 11 BMA X 190 BMA X 191 HOH X 409 HOH X 434 SITE 3 AC1 11 HOH X 442 HOH X 486 HOH X 679 SITE 1 AC2 9 TRP X 60 GLU X 74 GLN X 76 LYS X 106 SITE 2 AC2 9 ASP X 111 MAN X 186 BMA X 188 HOH X 409 SITE 3 AC2 9 HOH X 658 SITE 1 AC3 8 GLN X 62 GLN X 76 LYS X 106 GLN X 161 SITE 2 AC3 8 BMA X 187 BMA X 189 HOH X 647 HOH X 658 SITE 1 AC4 10 TRP X 23 TRP X 113 LYS X 153 BMA X 188 SITE 2 AC4 10 BMA X 190 HOH X 408 HOH X 413 HOH X 457 SITE 3 AC4 10 HOH X 492 HOH X 568 SITE 1 AC5 9 TRP X 23 ASN X 110 LYS X 153 MAN X 186 SITE 2 AC5 9 BMA X 189 BMA X 191 HOH X 434 HOH X 529 SITE 3 AC5 9 HOH X 682 SITE 1 AC6 5 GLU X 74 ARG X 155 MAN X 186 BMA X 190 SITE 2 AC6 5 HOH X 679 SITE 1 AC7 6 ASP X 10 GLU X 12 ASN X 44 TYR X 46 SITE 2 AC7 6 ASP X 176 HOH X 432 SITE 1 AC8 5 CYS X 29 LYS X 31 GLU X 53 ASN X 55 SITE 2 AC8 5 ASP X 61 SITE 1 AC9 9 LYS X 45 TYR X 46 ALA X 145 ALA X 185 SITE 2 AC9 9 HOH X 425 HOH X 484 HOH X 561 HOH X 625 SITE 3 AC9 9 HOH X 661 SITE 1 BC1 9 SER X 18 LYS X 31 TRP X 68 GLY X 71 SITE 2 BC1 9 VAL X 73 EDO X 404 HOH X 533 HOH X 537 SITE 3 BC1 9 HOH X 669 SITE 1 BC2 8 SER X 18 GLU X 21 GLY X 66 THR X 67 SITE 2 BC2 8 TRP X 68 GLN X 157 EDO X 403 HOH X 493
CRYST1 38.281 45.700 110.113 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.026123 0.000000 0.000000 0.00000
SCALE2 0.000000 0.021882 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009082 0.00000