10 20 30 40 50 60 70 80 1PMB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXYGEN STORAGE 27-NOV-89 1PMB
TITLE THE DETERMINATION OF THE CRYSTAL STRUCTURE OF RECOMBINANT TITLE 2 PIG MYOGLOBIN BY MOLECULAR REPLACEMENT AND ITS REFINEMENT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823
KEYWDS OXYGEN STORAGE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.J.SMERDON,T.J.OLDFIELD,E.J.DODSON,G.G.DODSON,R.E.HUBBARD, AUTHOR 2 A.J.WILKINSON
REVDAT 3 24-FEB-09 1PMB 1 VERSN REVDAT 2 01-APR-03 1PMB 1 JRNL REVDAT 1 15-JAN-90 1PMB 0
JRNL AUTH S.J.SMERDON,T.J.OLDFIELD,E.J.DODSON,G.G.DODSON, JRNL AUTH 2 R.E.HUBBARD,A.J.WILKINSON JRNL TITL DETERMINATION OF THE CRYSTAL STRUCTURE OF JRNL TITL 2 RECOMBINANT PIG MYOGLOBIN BY MOLECULAR REPLACEMENT JRNL TITL 3 AND ITS REFINEMENT. JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 46 370 1990 JRNL REFN ISSN 0108-7681 JRNL PMID 2383370 JRNL DOI 10.1107/S0108768189012450
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.DODSON,R.E.HUBBARD,T.J.OLDFIELD,S.J.SMERDON, REMARK 1 AUTH 2 A.J.WILKINSON REMARK 1 TITL APOMYOGLOBIN AS A MOLECULAR RECOGNITION SURFACE. REMARK 1 TITL 2 EXPRESSION, RECONSTITUTION AND CRYSTALLISATION OF REMARK 1 TITL 3 RECOMBINANT PORCINE MYOGLOBIN IN ESCHERICHIA COLI REMARK 1 REF PROTEIN ENG. V. 2 233 1988 REMARK 1 REFN ISSN 0269-2139
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.024 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.075 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.090 ; 0.060 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.020 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.176 ; 0.120 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.239 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.251 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.206 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1PMB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.31500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.71748 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.06724 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.71748 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 46.06724 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 83 CD GLU B 83 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 2 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 GLY A 5 O - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 ASN A 12 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 ASN A 12 OD1 - CG - ND2 ANGL. DEV. = 23.4 DEGREES REMARK 500 ASN A 12 CB - CG - ND2 ANGL. DEV. = -16.7 DEGREES REMARK 500 TRP A 14 CB - CG - CD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 TRP A 14 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 TRP A 14 CG - CD2 - CE3 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 20 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 20 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 GLN A 26 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 PHE A 33 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 LYS A 34 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 GLU A 38 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP A 44 CA - C - O ANGL. DEV. = 14.7 DEGREES REMARK 500 LYS A 45 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 44 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 LEU A 49 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP A 53 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 53 OD1 - CG - OD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP A 53 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLU A 59 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 GLU A 59 OE1 - CD - OE2 ANGL. DEV. = 7.9 DEGREES REMARK 500 GLU A 59 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU A 69 O - C - N ANGL. DEV. = 13.0 DEGREES REMARK 500 ALA A 71 CA - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 GLY A 73 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 GLY A 74 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 LYS A 77 CG - CD - CE ANGL. DEV. = 23.3 DEGREES REMARK 500 LYS A 78 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS A 79 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 83 CB - CG - CD ANGL. DEV. = 20.3 DEGREES REMARK 500 GLU A 83 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 GLU A 83 CG - CD - OE1 ANGL. DEV. = 15.3 DEGREES REMARK 500 HIS A 93 CE1 - NE2 - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 HIS A 97 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 TYR A 103 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 103 O - C - N ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU A 109 CA - CB - CG ANGL. DEV. = 30.1 DEGREES REMARK 500 SER A 117 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 PHE A 123 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ALA A 125 CB - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ALA A 127 CB - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 117 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 71.21 -158.23 REMARK 500 LYS A 45 -24.82 -38.14 REMARK 500 SER A 58 108.34 -49.41 REMARK 500 LYS A 79 45.77 30.36 REMARK 500 GLN A 91 -73.46 -66.07 REMARK 500 GLN A 128 -75.31 -50.83 REMARK 500 GLN A 152 85.91 0.39 REMARK 500 ASP B 20 65.25 -156.25 REMARK 500 LYS B 79 44.77 25.54 REMARK 500 LYS B 96 -79.36 -81.22 REMARK 500 GLN B 152 108.81 0.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 166 DISTANCE = 5.91 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 154 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HOH A 156 O 163.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 154 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 159 O REMARK 620 2 HIS B 93 NE2 166.8 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 154 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 154
DBREF 1PMB A 1 153 UNP P02189 MYG_PIG 1 153 DBREF 1PMB B 1 153 UNP P02189 MYG_PIG 1 153
SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN LEU VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP VAL ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE LYS GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS SER GLU SEQRES 5 A 153 ASP GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 ASN THR VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 A 153 LYS GLY HIS HIS GLU ALA GLU LEU THR PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO VAL LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER GLU ALA ILE ILE GLN VAL LEU GLN SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET SER LYS ALA LEU GLU LEU PHE ARG ASN ASP MET ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN LEU VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP VAL ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE LYS GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS SER GLU SEQRES 5 B 153 ASP GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 B 153 ASN THR VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 B 153 LYS GLY HIS HIS GLU ALA GLU LEU THR PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO VAL LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER GLU ALA ILE ILE GLN VAL LEU GLN SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET SER LYS ALA LEU GLU LEU PHE ARG ASN ASP MET ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY
HET HEM A 154 43 HET HEM B 154 43
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETSYN HEM HEME
FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *57(H2 O)
HELIX 1 AA SER A 3 GLU A 18 1 16 HELIX 2 AB ASP A 20 GLY A 35 1 16 HELIX 3 AC HIS A 36 LYS A 42 1 7 HELIX 4 AD SER A 51 ALA A 57 1 7 HELIX 5 AE SER A 58 LYS A 77 1 20 HELIX 6 AF LEU A 86 THR A 95 1 10 HELIX 7 AG PRO A 100 LYS A 118 1 19 HELIX 8 AH GLY A 124 LEU A 149 1 26 HELIX 9 BA SER B 3 GLU B 18 1 16 HELIX 10 BB ASP B 20 GLY B 35 1 16 HELIX 11 BC HIS B 36 LYS B 42 1 7 HELIX 12 BD SER B 51 ALA B 57 1 7 HELIX 13 BE SER B 58 LYS B 77 1 20 HELIX 14 BF LEU B 86 THR B 95 1 10 HELIX 15 BG PRO B 100 LYS B 118 1 19 HELIX 16 BH GLY B 124 LEU B 149 1 26
LINK FE HEM A 154 NE2 HIS A 93 1555 1555 2.43 LINK FE HEM A 154 O HOH A 156 1555 1555 2.85 LINK FE HEM B 154 O HOH B 159 1555 1555 2.74 LINK FE HEM B 154 NE2 HIS B 93 1555 1555 2.33
SITE 1 AC1 14 THR A 39 LYS A 42 PHE A 43 HIS A 64 SITE 2 AC1 14 THR A 67 VAL A 68 ALA A 71 LEU A 89 SITE 3 AC1 14 SER A 92 HIS A 93 HIS A 97 ILE A 99 SITE 4 AC1 14 TYR A 103 HOH A 156 SITE 1 AC2 12 LYS B 42 PHE B 43 HIS B 64 THR B 67 SITE 2 AC2 12 VAL B 68 ALA B 71 SER B 92 HIS B 93 SITE 3 AC2 12 HIS B 97 ILE B 99 TYR B 103 HOH B 159
CRYST1 124.910 42.630 92.200 90.00 92.16 90.00 I 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008006 0.000000 0.000302 0.00000
SCALE2 0.000000 0.023458 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010854 0.00000