1PJY - Header Asymmetric Unit

HEADER RNA 04-JUN-03 1PJY

TITLE SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING STEM- TITLE 2 LOOP RNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 FRAMESHIFT INDUCING STEM-LOOP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 RNA TRANSCRIPT FROM SYNTHETIC DNA

KEYWDS NMR, FRAMESHIFT, HIV, TETRALOOP, RNA STRUCTURE

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR D.W.STAPLE,S.E.BUTCHER

REVDAT 2 24-FEB-09 1PJY 1 VERSN REVDAT 1 05-AUG-03 1PJY 0

JRNL AUTH D.W.STAPLE,S.E.BUTCHER JRNL TITL SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT JRNL TITL 2 INDUCING STEM-LOOP RNA. JRNL REF NUCLEIC ACIDS RES. V. 31 4326 2003 JRNL REFN ISSN 0305-1048 JRNL PMID 12888491 JRNL DOI 10.1093/NAR/GKG654

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1PJY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019377.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298; 303 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 50 MM; 50 MM; 50 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM HIV-1 FRAMESHIFT REMARK 210 INDUCING STEM-LOOP RNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_13C- REMARK 210 SEPARATED_NOESY, 2D HNN-COSY, REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, FELIX 98, SPARKY REMARK 210 3.72 REMARK 210 METHOD USED : TORSION ANGLE MOLECULAR REMARK 210 DYNAMICS, CARTESIAN SPACE REMARK 210 SIMULATED ANNEALING AND REMARK 210 MOLECULAR DYNAMICS, RESIDUAL REMARK 210 DIPOLAR COUPLING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : SUBMITTED CONFERMERS REMARK 210 REPRESENT THE 20 LOWEST ENERGY REMARK 210 STRUCTURES WITH NO NOE REMARK 210 VIOLATIONS GREATER THAN 0.2 REMARK 210 ANGSTROMS AND NO DIHEDRAL REMARK 210 VIOLATIONS GREATER THAN 5 REMARK 210 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE INCORPORATION OF RESIDUAL DIPOLAR COUPLINGS AND THE REMARK 210 DIRECT DETECTION OF HYDROGEN BONDS WITH HNN-COSY WERE USED IN REMARK 210 SOLVING THIS STRUCTURE

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1PJY A 1 22 PDB 1PJY 1PJY 1 22

SEQRES 1 A 22 G G C C U U C C C A C A A SEQRES 2 A 22 G G G A A G G C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000