10 20 30 40 50 60 70 80 1PGP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE (CHOH(D)-NADP+(A)) 18-JUL-94 1PGP
TITLE CRYSTALLOGRAPHIC STUDY OF COENZYME, COENZYME ANALOGUE AND SUBSTRATE TITLE 2 BINDING IN 6-PHOSPHOGLUCONATE DEHYDROGENASE: IMPLICATIONS FOR NADP TITLE 3 SPECIFICITY AND THE ENZYME MECHANISM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.44; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OVIS ARIES; SOURCE 3 ORGANISM_COMMON: SHEEP; SOURCE 4 ORGANISM_TAXID: 9940
KEYWDS OXIDOREDUCTASE (CHOH(D)-NADP+(A))
EXPDTA X-RAY DIFFRACTION
AUTHOR M.J.ADAMS,C.PHILLIPS,S.GOVER,C.E.NAYLOR
REVDAT 4 16-NOV-11 1PGP 1 HETATM REVDAT 3 13-JUL-11 1PGP 1 VERSN REVDAT 2 24-FEB-09 1PGP 1 VERSN REVDAT 1 27-FEB-95 1PGP 0
JRNL AUTH M.J.ADAMS,G.H.ELLIS,S.GOVER,C.E.NAYLOR,C.PHILLIPS JRNL TITL CRYSTALLOGRAPHIC STUDY OF COENZYME, COENZYME ANALOGUE AND JRNL TITL 2 SUBSTRATE BINDING IN 6-PHOSPHOGLUCONATE DEHYDROGENASE: JRNL TITL 3 IMPLICATIONS FOR NADP SPECIFICITY AND THE ENZYME MECHANISM. JRNL REF STRUCTURE V. 2 651 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 7922042 JRNL DOI 10.1016/S0969-2126(00)00066-6
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.PHILLIPS,S.GOVER,M.J.ADAMS REMARK 1 TITL THE STRUCTURE OF 6-PHOSPHOGLUCONATE DEHYDROGENASE REFINED AT REMARK 1 TITL 2 2 ANGSTROMS RESOLUTION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.ADAMS,S.GOVER,R.LEABACK,C.PHILLIPS,D.O'N.SOMERS REMARK 1 TITL THE STRUCTURE OF 6-PHOSPHOGLUCONATE DEHYDROGENASE REFINED AT REMARK 1 TITL 2 2.5 ANGSTROMS RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 47 817 1991 REMARK 1 REFN ISSN 0108-7681
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 2.37 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1PGP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.17500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.17500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.74000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.17500
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1227 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1590 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1592 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1593 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 474 REMARK 465 VAL A 475 REMARK 465 SER A 476 REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 465 SER A 479 REMARK 465 TYR A 480 REMARK 465 ASN A 481 REMARK 465 ALA A 482
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 406 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 433 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 -49.34 -161.44 REMARK 500 LEU A 10 50.49 -93.95 REMARK 500 ASN A 44 -102.47 -103.47 REMARK 500 CYS A 170 127.10 -179.04 REMARK 500 ASP A 176 -112.07 39.78 REMARK 500 THR A 225 -153.69 -106.26 REMARK 500 ASP A 228 106.82 -54.41 REMARK 500 LEU A 292 42.04 -83.99 REMARK 500 PRO A 438 24.57 -77.66 REMARK 500 THR A 453 158.56 69.61 REMARK 500 LYS A 459 75.52 68.10 REMARK 500 HIS A 471 45.08 -106.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 459 PRO A 460 142.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 429 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 672 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 722 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH A1128 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1161 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A1193 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A1197 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1201 DISTANCE = 10.81 ANGSTROMS REMARK 525 HOH A1202 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH A1205 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 17.11 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH A1282 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1308 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A1333 DISTANCE = 12.86 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1408 DISTANCE = 10.64 ANGSTROMS REMARK 525 HOH A1414 DISTANCE = 10.22 ANGSTROMS REMARK 525 HOH A1415 DISTANCE = 9.32 ANGSTROMS REMARK 525 HOH A1418 DISTANCE = 9.82 ANGSTROMS REMARK 525 HOH A1419 DISTANCE = 12.45 ANGSTROMS REMARK 525 HOH A1421 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A1422 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 17.73 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 21.47 ANGSTROMS REMARK 525 HOH A1432 DISTANCE = 13.97 ANGSTROMS REMARK 525 HOH A1436 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1438 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A1439 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A1440 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1441 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1448 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1451 DISTANCE = 10.73 ANGSTROMS REMARK 525 HOH A1452 DISTANCE = 19.54 ANGSTROMS REMARK 525 HOH A1454 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A1455 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A1459 DISTANCE = 11.26 ANGSTROMS REMARK 525 HOH A1464 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1471 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1474 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1475 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A1476 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A1478 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A1481 DISTANCE = 10.91 ANGSTROMS REMARK 525 HOH A1484 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A1487 DISTANCE = 10.45 ANGSTROMS REMARK 525 HOH A1488 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A1493 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH A1496 DISTANCE = 17.01 ANGSTROMS REMARK 525 HOH A1497 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A1498 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1500 DISTANCE = 13.54 ANGSTROMS REMARK 525 HOH A1501 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A1511 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1512 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1513 DISTANCE = 10.21 ANGSTROMS REMARK 525 HOH A1516 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1517 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH A1518 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A1519 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A1523 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A1528 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH A1530 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1531 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A1533 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH A1538 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A1539 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A1540 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1541 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1542 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1550 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A1551 DISTANCE = 12.80 ANGSTROMS REMARK 525 HOH A1552 DISTANCE = 16.44 ANGSTROMS REMARK 525 HOH A1553 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A1554 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A1556 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1557 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1558 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH A1559 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH A1565 DISTANCE = 9.62 ANGSTROMS REMARK 525 HOH A1567 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH A1568 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1576 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A1578 DISTANCE = 9.89 ANGSTROMS REMARK 525 HOH A1580 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1581 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A1582 DISTANCE = 10.86 ANGSTROMS REMARK 525 HOH A1583 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1584 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A1585 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A1586 DISTANCE = 9.64 ANGSTROMS REMARK 525 HOH A1588 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A1590 DISTANCE = 16.09 ANGSTROMS REMARK 525 HOH A1592 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A1593 DISTANCE = 8.96 ANGSTROMS
REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE HET GROUP, 6-PHOSPHOGLUCONIC ACID, IS IONIZED AND REMARK 600 CARRIES A NET -- CHARGE.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6PG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PGD RELATED DB: PDB REMARK 900 RELATED ID: 1PGN RELATED DB: PDB REMARK 900 RELATED ID: 1PGO RELATED DB: PDB REMARK 900 RELATED ID: 1PGQ RELATED DB: PDB
DBREF 1PGP A 1 482 UNP P00349 6PGD_SHEEP 1 482
SEQRES 1 A 482 ALA GLN ALA ASP ILE ALA LEU ILE GLY LEU ALA VAL MET SEQRES 2 A 482 GLY GLN ASN LEU ILE LEU ASN MET ASN ASP HIS GLY PHE SEQRES 3 A 482 VAL VAL CYS ALA PHE ASN ARG THR VAL SER LYS VAL ASP SEQRES 4 A 482 ASP PHE LEU ALA ASN GLU ALA LYS GLY THR LYS VAL LEU SEQRES 5 A 482 GLY ALA HIS SER LEU GLU GLU MET VAL SER LYS LEU LYS SEQRES 6 A 482 LYS PRO ARG ARG ILE ILE LEU LEU VAL LYS ALA GLY GLN SEQRES 7 A 482 ALA VAL ASP ASN PHE ILE GLU LYS LEU VAL PRO LEU LEU SEQRES 8 A 482 ASP ILE GLY ASP ILE ILE ILE ASP GLY GLY ASN SER GLU SEQRES 9 A 482 TYR ARG ASP THR MET ARG ARG CYS ARG ASP LEU LYS ASP SEQRES 10 A 482 LYS GLY ILE LEU PHE VAL GLY SER GLY VAL SER GLY GLY SEQRES 11 A 482 GLU ASP GLY ALA ARG TYR GLY PRO SER LEU MET PRO GLY SEQRES 12 A 482 GLY ASN LYS GLU ALA TRP PRO HIS ILE LYS ALA ILE PHE SEQRES 13 A 482 GLN GLY ILE ALA ALA LYS VAL GLY THR GLY GLU PRO CYS SEQRES 14 A 482 CYS ASP TRP VAL GLY ASP ASP GLY ALA GLY HIS PHE VAL SEQRES 15 A 482 LYS MET VAL HIS ASN GLY ILE GLU TYR GLY ASP MET GLN SEQRES 16 A 482 LEU ILE CYS GLU ALA TYR HIS LEU MET LYS ASP VAL LEU SEQRES 17 A 482 GLY LEU GLY HIS LYS GLU MET ALA LYS ALA PHE GLU GLU SEQRES 18 A 482 TRP ASN LYS THR GLU LEU ASP SER PHE LEU ILE GLU ILE SEQRES 19 A 482 THR ALA SER ILE LEU LYS PHE GLN ASP ALA ASP GLY LYS SEQRES 20 A 482 HIS LEU LEU PRO LYS ILE ARG ASP SER ALA GLY GLN LYS SEQRES 21 A 482 GLY THR GLY LYS TRP THR ALA ILE SER ALA LEU GLU TYR SEQRES 22 A 482 GLY VAL PRO VAL THR LEU ILE GLY GLU ALA VAL PHE ALA SEQRES 23 A 482 ARG CYS LEU SER SER LEU LYS ASP GLU ARG ILE GLN ALA SEQRES 24 A 482 SER LYS LYS LEU LYS GLY PRO GLN ASN ILE PRO PHE GLU SEQRES 25 A 482 GLY ASP LYS LYS SER PHE LEU GLU ASP ILE ARG LYS ALA SEQRES 26 A 482 LEU TYR ALA SER LYS ILE ILE SER TYR ALA GLN GLY PHE SEQRES 27 A 482 MET LEU LEU ARG GLN ALA ALA THR GLU PHE GLY TRP THR SEQRES 28 A 482 LEU ASN TYR GLY GLY ILE ALA LEU MET TRP ARG GLY GLY SEQRES 29 A 482 CYS ILE ILE ARG SER VAL PHE LEU GLY LYS ILE LYS ASP SEQRES 30 A 482 ALA PHE ASP ARG ASN PRO GLY LEU GLN ASN LEU LEU LEU SEQRES 31 A 482 ASP ASP PHE PHE LYS SER ALA VAL GLU ASN CYS GLN ASP SEQRES 32 A 482 SER TRP ARG ARG ALA ILE SER THR GLY VAL GLN ALA GLY SEQRES 33 A 482 ILE PRO MET PRO CYS PHE THR THR ALA LEU SER PHE TYR SEQRES 34 A 482 ASP GLY TYR ARG HIS ALA MET LEU PRO ALA ASN LEU ILE SEQRES 35 A 482 GLN ALA GLN ARG ASP TYR PHE GLY ALA HIS THR TYR GLU SEQRES 36 A 482 LEU LEU ALA LYS PRO GLY GLN PHE ILE HIS THR ASN TRP SEQRES 37 A 482 THR GLY HIS GLY GLY SER VAL SER SER SER SER TYR ASN SEQRES 38 A 482 ALA
HET 6PG A 502 17 HET SO4 A 508 5
HETNAM 6PG 6-PHOSPHOGLUCONIC ACID HETNAM SO4 SULFATE ION
FORMUL 2 6PG C6 H13 O10 P FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *398(H2 O)
HELIX 1 A VAL A 12 ASP A 23 1 12 HELIX 2 B SER A 36 ALA A 43 1 8 HELIX 3 C LEU A 57 LYS A 63 1 7 HELIX 4 D GLN A 78 LEU A 90 1 13 HELIX 5 E TYR A 105 ASP A 117 1 13 HELIX 6 F GLY A 130 TYR A 136 1 7 HELIX 7 G TRP A 149 ILE A 159 1 11 HELIX 8 H ALA A 178 ASP A 206 1 29 HELIX 9 I HIS A 212 TRP A 222 1 11 HELIX 10 J PHE A 230 LYS A 240 1 11 HELIX 11 K THR A 262 TYR A 273 1 12 HELIX 12 L THR A 278 SER A 291 1 14 HELIX 13 M LYS A 293 LYS A 302 1 10 HELIX 14 N LYS A 315 PHE A 348 1 34 HELIX 15 O TYR A 354 MET A 360 1 7 HELIX 16 P PHE A 371 ARG A 381 1 11 HELIX 17 Q ASP A 392 ALA A 415 1 24 HELIX 18 R PRO A 420 ARG A 433 1 14 HELIX 19 S ALA A 439 GLY A 450 1 12
SHEET 1 COE 8 LEU A 52 GLY A 53 0 SHEET 2 COE 8 VAL A 28 PHE A 31 1 O VAL A 28 N LEU A 52 SHEET 3 COE 8 ILE A 5 ILE A 8 1 O ILE A 5 N CYS A 29 SHEET 4 COE 8 ARG A 69 LEU A 72 1 O ARG A 69 N ALA A 6 SHEET 5 COE 8 ILE A 96 ASP A 99 1 O ILE A 96 N ILE A 70 SHEET 6 COE 8 LEU A 121 SER A 128 1 O LEU A 121 N ILE A 97 SHEET 7 COE 8 SER A 139 GLY A 144 -1 N SER A 139 O SER A 128 SHEET 8 COE 8 GLY A 174 ASP A 175 1 O GLY A 174 N GLY A 144
CISPEP 1 LYS A 66 PRO A 67 0 1.49
SITE 1 AC1 16 ASN A 102 SER A 128 GLY A 129 LYS A 183 SITE 2 AC1 16 ASN A 187 GLU A 190 TYR A 191 LYS A 260 SITE 3 AC1 16 THR A 262 ARG A 287 ILE A 366 ARG A 446 SITE 4 AC1 16 HIS A 452 HOH A 528 HOH A1109 HOH A1232 SITE 1 AC2 6 LYS A 50 GLY A 211 HIS A 212 HIS A 248 SITE 2 AC2 6 HOH A 636 HOH A1164
CRYST1 72.740 148.400 102.350 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013748 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006739 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009770 0.00000