1PF3 - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 23-MAY-03 1PF3

TITLE CRYSTAL STRUCTURE OF THE M441L MUTANT OF THE MULTICOPPER TITLE 2 OXIDASE CUEO

COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE COPPER OXIDASE CUEO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COPPER EFFLUX OXIDASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CUEO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21

KEYWDS COPPER, MULTICOPPER OXIDASE, OXIDOREDUCTASE

EXPDTA X-RAY DIFFRACTION

AUTHOR S.A.ROBERTS,G.F.WILDNER,G.GRASS,A.WEICHSEL,A.AMBRUS, AUTHOR 2 C.RENSING,W.R.MONTFORT

REVDAT 4 17-NOV-09 1PF3 1 REMARK TITLE REVDAT 3 24-FEB-09 1PF3 1 VERSN REVDAT 2 02-SEP-03 1PF3 1 JRNL REVDAT 1 24-JUN-03 1PF3 0

JRNL AUTH S.A.ROBERTS,G.F.WILDNER,G.GRASS,A.WEICHSEL, JRNL AUTH 2 A.AMBRUS,C.RENSING,W.R.MONTFORT JRNL TITL A LABILE REGULATORY COPPER ION LIES NEAR THE T1 JRNL TITL 2 COPPER SITE IN THE MULTICOPPER OXIDASE CUEO. JRNL REF J.BIOL.CHEM. V. 278 31958 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12794077 JRNL DOI 10.1074/JBC.M302963200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.22 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 63714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : FROM PDB ENTRY 1KV7 REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3211 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 284 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3657 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3335 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4970 ; 1.571 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7784 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 6.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4073 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 589 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3794 ; 0.254 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2144 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 277 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2308 ; 0.927 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3721 ; 1.625 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1349 ; 2.592 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1249 ; 4.091 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE T1 COPPER IS PARTIALLY DEPLETED (AROUND 50% OCCUPANCY) REMARK 3 THE T2 COPPER IS SOMEWHAT LESS DEPLETED. REMARK 3 MISSING FROM THE MODEL ARE RESIDUES REMARK 3 1-30 AT THE N-TERMINUS (1-28 ARE A PRESUMABLY CLEAVED SIGNAL REMARK 3 PEPTIDE, 29-30 ARE NOT VISIBLE IN THE ELECTRON DENSITY MAP), REMARK 3 AND RESIDUES 380-402 WHICH ARE NOT VISIBLE IN THE ELECTRON REMARK 3 DENSITY MAP AND, PRESUMABLY, DISORDERED. REMARK 3 A STREP TAG ON THE C TERMINUS HAS NOT BEEN CLEAVED BUT IS NOT REMARK 3 VISIBLE IN THE ELECTRON DENSITY MAPS.

REMARK 4 REMARK 4 1PF3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019283.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR D*TREK (MSC/ REMARK 200 RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KV7 REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG, 200 MM AMMONIUM ACETATE, REMARK 280 100 MM SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 22K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.59650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 29 REMARK 465 GLU A 30 REMARK 465 ASP A 380 REMARK 465 HIS A 381 REMARK 465 SER A 382 REMARK 465 GLN A 383 REMARK 465 MET A 384 REMARK 465 MET A 385 REMARK 465 GLY A 386 REMARK 465 HIS A 387 REMARK 465 MET A 388 REMARK 465 GLY A 389 REMARK 465 HIS A 390 REMARK 465 GLY A 391 REMARK 465 ASN A 392 REMARK 465 MET A 393 REMARK 465 ASN A 394 REMARK 465 HIS A 395 REMARK 465 MET A 396 REMARK 465 ASN A 397 REMARK 465 HIS A 398 REMARK 465 GLY A 399 REMARK 465 GLY A 400 REMARK 465 LYS A 401 REMARK 465 PHE A 402 REMARK 465 SER A 517 REMARK 465 ALA A 518 REMARK 465 TRP A 519 REMARK 465 SER A 520 REMARK 465 HIS A 521 REMARK 465 PRO A 522 REMARK 465 ASN A 523 REMARK 465 PHE A 524 REMARK 465 GLU A 525 REMARK 465 LYS A 526

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -135.89 57.41 REMARK 500 ASP A 132 59.90 -143.69 REMARK 500 LYS A 174 14.52 -148.02 REMARK 500 ILE A 178 -73.31 -119.03 REMARK 500 ALA A 241 -15.86 -141.67 REMARK 500 SER A 259 -168.34 -117.03 REMARK 500 GLU A 476 89.23 -155.77 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2235 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A2296 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A2317 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A2366 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A2386 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2387 DISTANCE = 6.63 ANGSTROMS

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 701 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 505 ND1 REMARK 620 2 CYS A 500 SG 126.4 REMARK 620 3 HIS A 443 ND1 110.3 123.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 703 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 NE2 REMARK 620 2 HIS A 446 NE2 173.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 C2C A 702 CU3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 ND1 REMARK 620 2 C2C A 702 CL 109.3 REMARK 620 3 HIS A 141 NE2 133.4 92.0 REMARK 620 4 HIS A 501 NE2 105.1 87.0 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 C2C A 702 CU2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 NE2 REMARK 620 2 C2C A 702 CL 99.9 REMARK 620 3 HIS A 448 NE2 106.4 121.2 REMARK 620 4 HIS A 499 NE2 115.4 95.4 117.6 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 701 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 703 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2C A 702

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KV7 RELATED DB: PDB

DBREF 1PF3 A 29 516 UNP P36649 CUEO_ECOLI 29 516

SEQADV 1PF3 LEU A 441 UNP P36649 MET 441 ENGINEERED SEQADV 1PF3 SER A 517 UNP P36649 STREP TAG SEQADV 1PF3 ALA A 518 UNP P36649 STREP TAG SEQADV 1PF3 TRP A 519 UNP P36649 STREP TAG SEQADV 1PF3 SER A 520 UNP P36649 STREP TAG SEQADV 1PF3 HIS A 521 UNP P36649 STREP TAG SEQADV 1PF3 PRO A 522 UNP P36649 STREP TAG SEQADV 1PF3 ASN A 523 UNP P36649 STREP TAG SEQADV 1PF3 PHE A 524 UNP P36649 STREP TAG SEQADV 1PF3 GLU A 525 UNP P36649 STREP TAG SEQADV 1PF3 LYS A 526 UNP P36649 STREP TAG

SEQRES 1 A 498 ALA GLU ARG PRO THR LEU PRO ILE PRO ASP LEU LEU THR SEQRES 2 A 498 THR ASP ALA ARG ASN ARG ILE GLN LEU THR ILE GLY ALA SEQRES 3 A 498 GLY GLN SER THR PHE GLY GLY LYS THR ALA THR THR TRP SEQRES 4 A 498 GLY TYR ASN GLY ASN LEU LEU GLY PRO ALA VAL LYS LEU SEQRES 5 A 498 GLN ARG GLY LYS ALA VAL THR VAL ASP ILE TYR ASN GLN SEQRES 6 A 498 LEU THR GLU GLU THR THR LEU HIS TRP HIS GLY LEU GLU SEQRES 7 A 498 VAL PRO GLY GLU VAL ASP GLY GLY PRO GLN GLY ILE ILE SEQRES 8 A 498 PRO PRO GLY GLY LYS ARG SER VAL THR LEU ASN VAL ASP SEQRES 9 A 498 GLN PRO ALA ALA THR CYS TRP PHE HIS PRO HIS GLN HIS SEQRES 10 A 498 GLY LYS THR GLY ARG GLN VAL ALA MET GLY LEU ALA GLY SEQRES 11 A 498 LEU VAL VAL ILE GLU ASP ASP GLU ILE LEU LYS LEU MET SEQRES 12 A 498 LEU PRO LYS GLN TRP GLY ILE ASP ASP VAL PRO VAL ILE SEQRES 13 A 498 VAL GLN ASP LYS LYS PHE SER ALA ASP GLY GLN ILE ASP SEQRES 14 A 498 TYR GLN LEU ASP VAL MET THR ALA ALA VAL GLY TRP PHE SEQRES 15 A 498 GLY ASP THR LEU LEU THR ASN GLY ALA ILE TYR PRO GLN SEQRES 16 A 498 HIS ALA ALA PRO ARG GLY TRP LEU ARG LEU ARG LEU LEU SEQRES 17 A 498 ASN GLY CYS ASN ALA ARG SER LEU ASN PHE ALA THR SER SEQRES 18 A 498 ASP ASN ARG PRO LEU TYR VAL ILE ALA SER ASP GLY GLY SEQRES 19 A 498 LEU LEU PRO GLU PRO VAL LYS VAL SER GLU LEU PRO VAL SEQRES 20 A 498 LEU MET GLY GLU ARG PHE GLU VAL LEU VAL GLU VAL ASN SEQRES 21 A 498 ASP ASN LYS PRO PHE ASP LEU VAL THR LEU PRO VAL SER SEQRES 22 A 498 GLN MET GLY MET ALA ILE ALA PRO PHE ASP LYS PRO HIS SEQRES 23 A 498 PRO VAL MET ARG ILE GLN PRO ILE ALA ILE SER ALA SER SEQRES 24 A 498 GLY ALA LEU PRO ASP THR LEU SER SER LEU PRO ALA LEU SEQRES 25 A 498 PRO SER LEU GLU GLY LEU THR VAL ARG LYS LEU GLN LEU SEQRES 26 A 498 SER MET ASP PRO MET LEU ASP MET MET GLY MET GLN MET SEQRES 27 A 498 LEU MET GLU LYS TYR GLY ASP GLN ALA MET ALA GLY MET SEQRES 28 A 498 ASP HIS SER GLN MET MET GLY HIS MET GLY HIS GLY ASN SEQRES 29 A 498 MET ASN HIS MET ASN HIS GLY GLY LYS PHE ASP PHE HIS SEQRES 30 A 498 HIS ALA ASN LYS ILE ASN GLY GLN ALA PHE ASP MET ASN SEQRES 31 A 498 LYS PRO MET PHE ALA ALA ALA LYS GLY GLN TYR GLU ARG SEQRES 32 A 498 TRP VAL ILE SER GLY VAL GLY ASP MET LEU LEU HIS PRO SEQRES 33 A 498 PHE HIS ILE HIS GLY THR GLN PHE ARG ILE LEU SER GLU SEQRES 34 A 498 ASN GLY LYS PRO PRO ALA ALA HIS ARG ALA GLY TRP LYS SEQRES 35 A 498 ASP THR VAL LYS VAL GLU GLY ASN VAL SER GLU VAL LEU SEQRES 36 A 498 VAL LYS PHE ASN HIS ASP ALA PRO LYS GLU HIS ALA TYR SEQRES 37 A 498 MET ALA HIS CYS HIS LEU LEU GLU HIS GLU ASP THR GLY SEQRES 38 A 498 MET MET LEU GLY PHE THR VAL SER ALA TRP SER HIS PRO SEQRES 39 A 498 ASN PHE GLU LYS

HET CU A 701 1 HET CU A 703 1 HET C2C A 702 3

HETNAM CU COPPER (II) ION HETNAM C2C CU-CL-CU LINKAGE

FORMUL 2 CU 2(CU 2+) FORMUL 4 C2C CL CU2 FORMUL 5 HOH *427(H2 O)

HELIX 1 1 PRO A 108 GLY A 113 1 6 HELIX 2 2 LYS A 147 MET A 154 1 8 HELIX 3 3 ASP A 164 LYS A 169 1 6 HELIX 4 4 ASP A 201 GLY A 208 1 8 HELIX 5 5 ASP A 356 GLY A 372 1 17 HELIX 6 6 ASP A 373 ALA A 377 5 5 HELIX 7 7 ASP A 403 HIS A 406 5 4 HELIX 8 8 ALA A 463 ALA A 467 5 5 HELIX 9 9 PRO A 491 ALA A 495 5 5 HELIX 10 10 LEU A 502 THR A 508 1 7

SHEET 1 A 5 LEU A 39 LEU A 40 0 SHEET 2 A 5 ALA A 77 GLN A 81 1 O LYS A 79 N LEU A 40 SHEET 3 A 5 GLY A 158 GLU A 163 1 O VAL A 161 N VAL A 78 SHEET 4 A 5 ALA A 136 HIS A 141 -1 N ALA A 136 O ILE A 162 SHEET 5 A 5 HIS A 101 HIS A 103 -1 N HIS A 101 O HIS A 141 SHEET 1 B 4 LYS A 62 TYR A 69 0 SHEET 2 B 4 ARG A 47 PHE A 59 -1 N GLY A 55 O THR A 66 SHEET 3 B 4 ALA A 85 ASN A 92 1 O TYR A 91 N ILE A 52 SHEET 4 B 4 LYS A 124 ASN A 130 -1 O VAL A 127 N VAL A 88 SHEET 1 C 6 THR A 213 THR A 216 0 SHEET 2 C 6 ASP A 180 LYS A 188 -1 N GLN A 186 O LEU A 215 SHEET 3 C 6 GLN A 223 ASN A 237 1 O ARG A 234 N VAL A 183 SHEET 4 C 6 ARG A 280 VAL A 287 -1 O VAL A 283 N LEU A 233 SHEET 5 C 6 LEU A 254 SER A 259 -1 N TYR A 255 O LEU A 284 SHEET 6 C 6 GLY A 262 VAL A 270 -1 O VAL A 270 N LEU A 254 SHEET 1 D 7 THR A 213 THR A 216 0 SHEET 2 D 7 ASP A 180 LYS A 188 -1 N GLN A 186 O LEU A 215 SHEET 3 D 7 GLN A 223 ASN A 237 1 O ARG A 234 N VAL A 183 SHEET 4 D 7 HIS A 314 SER A 325 1 O ARG A 318 N HIS A 224 SHEET 5 D 7 PHE A 293 THR A 297 -1 N PHE A 293 O ILE A 319 SHEET 6 D 7 LEU A 244 THR A 248 -1 N ALA A 247 O VAL A 296 SHEET 7 D 7 LEU A 273 VAL A 275 -1 O VAL A 275 N LEU A 244 SHEET 1 E 5 ASN A 408 ILE A 410 0 SHEET 2 E 5 THR A 347 MET A 355 -1 N SER A 354 O LYS A 409 SHEET 3 E 5 GLU A 430 SER A 435 1 O ARG A 431 N THR A 347 SHEET 4 E 5 VAL A 479 VAL A 484 -1 O SER A 480 N ILE A 434 SHEET 5 E 5 ARG A 453 SER A 456 -1 N ARG A 453 O LEU A 483 SHEET 1 F 5 PHE A 422 ALA A 423 0 SHEET 2 F 5 MET A 511 THR A 515 1 O THR A 515 N PHE A 422 SHEET 3 F 5 TYR A 496 CYS A 500 -1 N ALA A 498 O LEU A 512 SHEET 4 F 5 HIS A 443 ILE A 447 -1 N HIS A 446 O HIS A 499 SHEET 5 F 5 THR A 472 VAL A 475 -1 O VAL A 473 N PHE A 445

LINK CU CU A 701 ND1 HIS A 505 1555 1555 2.25 LINK CU CU A 701 SG CYS A 500 1555 1555 2.21 LINK CU CU A 701 ND1 HIS A 443 1555 1555 2.16 LINK CU CU A 703 NE2 HIS A 101 1555 1555 1.91 LINK CU CU A 703 NE2 HIS A 446 1555 1555 1.91 LINK CU3 C2C A 702 ND1 HIS A 103 1555 1555 2.00 LINK CU3 C2C A 702 NE2 HIS A 141 1555 1555 2.03 LINK CU3 C2C A 702 NE2 HIS A 501 1555 1555 2.11 LINK CU2 C2C A 702 NE2 HIS A 143 1555 1555 2.03 LINK CU2 C2C A 702 NE2 HIS A 448 1555 1555 1.93 LINK CU2 C2C A 702 NE2 HIS A 499 1555 1555 2.05

CISPEP 1 ALA A 308 PRO A 309 0 0.33

SITE 1 AC1 5 LEU A 442 HIS A 443 CYS A 500 HIS A 505 SITE 2 AC1 5 MET A 510 SITE 1 AC2 6 HIS A 101 HIS A 103 HIS A 446 HIS A 448 SITE 2 AC2 6 C2C A 702 HOH A2018 SITE 1 AC3 11 HIS A 101 HIS A 103 TRP A 139 HIS A 141 SITE 2 AC3 11 HIS A 143 HIS A 446 HIS A 448 HIS A 499 SITE 3 AC3 11 HIS A 501 CU A 703 HOH A2324

CRYST1 50.445 91.193 53.905 90.00 102.35 90.00 P 1 21 1 2

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.019824 0.000000 0.004339 0.00000

SCALE2 0.000000 0.010966 0.000000 0.00000

SCALE3 0.000000 0.000000 0.018990 0.00000