10 20 30 40 50 60 70 80 1PC0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 15-MAY-03 1PC0
TITLE NMR STRUCTURE OF THE ARCHAEAL HOMOLOGUE OF RNASE P PROTEIN TITLE 2 RPP29
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF1917; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 17-77; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1917; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T
KEYWDS SANDWICH, BETA-SHEET, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR D.J.SIDOTE,D.W.HOFFMAN
REVDAT 2 24-FEB-09 1PC0 1 VERSN REVDAT 1 09-DEC-03 1PC0 0
JRNL AUTH D.J.SIDOTE,D.W.HOFFMAN JRNL TITL NMR STRUCTURE OF AN ARCHAEAL HOMOLOGUE OF JRNL TITL 2 RIBONUCLEASE P PROTEIN RPP29 JRNL REF BIOCHEMISTRY V. 42 13541 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14622001 JRNL DOI 10.1021/BI030170Z
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 651 RESTRAINTS, 554 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 70 DIHEDRAL ANGLE RESTRAINTS,27 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1PC0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019222.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 5.8; 3.0 REMARK 210 IONIC STRENGTH : 100MM; 100MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM RPP29 U-15N;10MM REMARK 210 POSTASSIUM PHOSPHATE PH 5.8 REMARK 210 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29 U- REMARK 210 15N;10MM POSTASSIUM PHOSPHATE REMARK 210 PH 3.0 100MM SODIUM CHLORIDE REMARK 210 10MM SODIUM AZIDE; 1.8 MM REMARK 210 RPP29 U-15N; U-13C; 10MM REMARK 210 POSTASSIUM PHOSPHATE PH 5.8 REMARK 210 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29; REMARK 210 10MM POSTASSIUM PHOSPHATE PH REMARK 210 5.8 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29; REMARK 210 10MM POSTASSIUM PHOSPHATE PH REMARK 210 3.0 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29; REMARK 210 10MM POSTASSIUM PHOSPHATE PH REMARK 210 5.8 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 3D HETERONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 25 133.09 89.90 REMARK 500 1 PRO A 26 82.43 -54.37 REMARK 500 1 ASN A 27 157.39 177.77 REMARK 500 1 SER A 29 55.03 -177.43 REMARK 500 1 ASP A 39 73.84 71.16 REMARK 500 1 ASN A 43 -91.80 -149.60 REMARK 500 1 THR A 49 -88.75 -103.40 REMARK 500 1 GLU A 50 -53.01 -141.16 REMARK 500 1 LYS A 58 -33.44 -36.59 REMARK 500 1 ARG A 61 -175.16 54.41 REMARK 500 2 SER A 25 99.59 69.28 REMARK 500 2 ASN A 27 151.56 -36.78 REMARK 500 2 SER A 29 53.45 -94.60 REMARK 500 2 GLU A 30 171.19 -42.73 REMARK 500 2 THR A 41 40.95 -149.86 REMARK 500 2 ASN A 43 -66.26 -171.56 REMARK 500 2 THR A 49 -88.22 -107.09 REMARK 500 2 GLU A 50 -55.61 -138.63 REMARK 500 2 LYS A 58 65.44 64.23 REMARK 500 2 ARG A 59 177.43 65.01 REMARK 500 2 ARG A 61 -163.34 -58.68 REMARK 500 2 LYS A 68 66.42 -69.44 REMARK 500 3 SER A 25 103.63 66.85 REMARK 500 3 ASN A 27 156.51 -37.45 REMARK 500 3 GLU A 30 150.03 62.04 REMARK 500 3 GLU A 40 -77.01 -43.17 REMARK 500 3 GLN A 42 63.72 60.43 REMARK 500 3 ASN A 43 -61.77 179.46 REMARK 500 3 THR A 49 -92.72 -131.23 REMARK 500 3 GLU A 50 -91.28 -90.39 REMARK 500 3 LYS A 68 66.58 -68.33 REMARK 500 4 SER A 25 107.41 75.84 REMARK 500 4 ASN A 27 159.89 -40.00 REMARK 500 4 GLU A 30 -171.77 45.60 REMARK 500 4 THR A 41 50.03 -162.16 REMARK 500 4 ASN A 43 -74.48 -175.76 REMARK 500 4 THR A 49 -89.22 -109.27 REMARK 500 4 GLU A 50 -59.86 -130.43 REMARK 500 4 LYS A 51 -8.01 -59.27 REMARK 500 4 LYS A 58 -31.45 -39.36 REMARK 500 4 ARG A 61 -172.02 56.17 REMARK 500 5 SER A 25 120.34 61.87 REMARK 500 5 ASN A 27 168.96 -46.28 REMARK 500 5 GLU A 30 171.80 61.11 REMARK 500 5 THR A 41 45.35 -163.70 REMARK 500 5 ASN A 43 -65.31 -172.10 REMARK 500 5 THR A 49 -114.62 -134.77 REMARK 500 5 GLU A 50 -89.90 -64.19 REMARK 500 5 LYS A 58 39.69 25.24 REMARK 500 5 ARG A 59 -168.26 178.46 REMARK 500 5 ARG A 61 -175.36 58.99 REMARK 500 6 SER A 25 -16.78 88.55 REMARK 500 6 HIS A 28 -67.11 -157.70 REMARK 500 6 SER A 29 -136.74 -96.63 REMARK 500 6 GLU A 30 104.33 -162.58 REMARK 500 6 THR A 41 44.26 -150.07 REMARK 500 6 GLN A 42 64.05 60.35 REMARK 500 6 ASN A 43 -82.59 -179.05 REMARK 500 6 THR A 49 -68.10 -97.97 REMARK 500 6 GLU A 50 -42.51 -174.83 REMARK 500 6 LYS A 58 68.84 -59.12 REMARK 500 6 ARG A 61 163.08 150.86 REMARK 500 7 SER A 25 114.48 61.70 REMARK 500 7 ASN A 27 161.67 -43.23 REMARK 500 7 GLU A 30 152.38 62.00 REMARK 500 7 GLU A 40 91.70 -58.70 REMARK 500 7 ASN A 43 -76.05 -165.50 REMARK 500 7 THR A 49 -92.94 -132.21 REMARK 500 7 GLU A 50 -93.89 -89.40 REMARK 500 7 LYS A 51 -30.52 -38.53 REMARK 500 7 LYS A 58 111.47 58.46 REMARK 500 7 ARG A 59 174.94 53.48 REMARK 500 7 ARG A 61 126.27 170.12 REMARK 500 8 SER A 25 41.13 34.50 REMARK 500 8 SER A 29 -102.25 -125.18 REMARK 500 8 GLU A 30 88.64 166.86 REMARK 500 8 GLU A 40 95.89 -56.15 REMARK 500 8 ASN A 43 -80.12 -166.29 REMARK 500 8 THR A 49 -104.02 -135.18 REMARK 500 8 GLU A 50 -85.60 -79.71 REMARK 500 8 LYS A 58 75.70 62.20 REMARK 500 8 ARG A 59 -179.02 61.42 REMARK 500 8 ARG A 61 -172.98 68.33 REMARK 500 9 SER A 25 104.53 64.36 REMARK 500 9 ASN A 27 157.99 -38.76 REMARK 500 9 GLU A 30 149.22 62.58 REMARK 500 9 ASP A 39 74.73 72.16 REMARK 500 9 GLN A 42 -78.25 -99.80 REMARK 500 9 ASN A 43 -106.03 -137.08 REMARK 500 9 THR A 49 -90.87 -112.25 REMARK 500 9 GLU A 50 -58.34 -129.57 REMARK 500 9 LYS A 58 67.70 -68.79 REMARK 500 9 ARG A 59 72.68 172.50 REMARK 500 9 ARG A 61 -177.39 58.37 REMARK 500 9 LYS A 70 -175.35 179.80 REMARK 500 10 SER A 25 102.58 54.57 REMARK 500 10 ASN A 27 155.14 -35.16 REMARK 500 10 SER A 29 66.32 -113.43 REMARK 500 10 GLU A 30 147.25 -37.56 REMARK 500 10 GLU A 40 99.43 -57.77 REMARK 500 10 ASN A 43 -79.33 -166.64 REMARK 500 10 THR A 49 -93.64 -106.05 REMARK 500 10 GLU A 50 -58.35 -132.88 REMARK 500 10 LYS A 58 -68.65 73.57 REMARK 500 10 ARG A 61 -175.80 63.89 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1PC0 A 17 77 UNP O28362 RNP1_ARCFU 17 77
SEQRES 1 A 61 GLY LEU MET VAL GLU VAL VAL GLU SER PRO ASN HIS SER SEQRES 2 A 61 GLU VAL GLY ILE LYS GLY GLU VAL VAL ASP GLU THR GLN SEQRES 3 A 61 ASN THR LEU LYS ILE MET THR GLU LYS GLY LEU LYS VAL SEQRES 4 A 61 VAL ALA LYS ARG GLY ARG THR PHE ARG VAL TRP TYR LYS SEQRES 5 A 61 GLY LYS ILE MET ARG ILE LYS GLY ASP
SHEET 1 A 6 LEU A 53 VAL A 56 0 SHEET 2 A 6 LEU A 45 MET A 48 -1 N LEU A 45 O VAL A 56 SHEET 3 A 6 VAL A 31 VAL A 38 -1 N VAL A 38 O LYS A 46 SHEET 4 A 6 MET A 19 GLU A 24 -1 N VAL A 20 O GLY A 35 SHEET 5 A 6 THR A 62 TRP A 66 -1 O ARG A 64 N GLU A 21 SHEET 6 A 6 ILE A 71 LYS A 75 -1 O ILE A 74 N PHE A 63
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000