10 20 30 40 50 60 70 80 1P97 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 09-MAY-03 1P97
TITLE NMR STRUCTURE OF THE C-TERMINAL PAS DOMAIN OF HIF2A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PAS DOMAIN; COMPND 5 SYNONYM: EPAS-1, MEMBER OF PAS PROTEIN 2, MOP2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGB1-PARALLEL
KEYWDS MIXED ALPHA-BETA FOLD, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.J.ERBEL,P.B.CARD,O.KARAKUZU,R.K.BRUICK,K.H.GARDNER
REVDAT 2 24-FEB-09 1P97 1 VERSN REVDAT 1 13-JAN-04 1P97 0
JRNL AUTH P.J.ERBEL,P.B.CARD,O.KARAKUZU,R.K.BRUICK, JRNL AUTH 2 K.H.GARDNER JRNL TITL STRUCTURAL BASIS FOR PAS DOMAIN HETERODIMERIZATION JRNL TITL 2 IN THE BASIC HELIX-LOOP-HELIX-PAS TRANSCRIPTION JRNL TITL 3 FACTOR HYPOXIA-INDUCIBLE FACTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 15504 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 14668441 JRNL DOI 10.1073/PNAS.2533374100
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1P97 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019165.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 15 MM - 75 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9MM HIF2A (240-350) U-15N, REMARK 210 13C; 50 MM TRIS BUFFER, 15 MM REMARK 210 NACL, 5 MM DTT (PH 7.3); 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 81.90 57.21 REMARK 500 1 SER A 5 155.47 64.42 REMARK 500 1 MET A 14 -85.22 44.59 REMARK 500 1 PHE A 18 114.67 156.26 REMARK 500 1 LEU A 37 92.77 -64.14 REMARK 500 1 TYR A 45 70.10 -68.85 REMARK 500 1 HIS A 46 133.52 74.33 REMARK 500 1 THR A 62 37.13 -147.84 REMARK 500 1 LEU A 96 9.40 57.77 REMARK 500 1 PRO A 98 98.62 -62.69 REMARK 500 1 LEU A 108 -67.67 -90.93 REMARK 500 2 SER A 5 -150.05 -156.02 REMARK 500 2 MET A 16 65.16 63.36 REMARK 500 2 PHE A 18 108.16 157.52 REMARK 500 2 LEU A 37 89.83 -59.16 REMARK 500 2 PHE A 44 -0.66 -151.90 REMARK 500 2 TYR A 45 66.33 -67.82 REMARK 500 2 HIS A 46 103.91 67.17 REMARK 500 2 THR A 62 29.81 -149.73 REMARK 500 2 HIS A 77 31.18 -98.69 REMARK 500 2 LEU A 96 -6.14 63.20 REMARK 500 2 PRO A 98 101.77 -59.20 REMARK 500 3 MET A 14 -78.58 31.83 REMARK 500 3 MET A 16 66.28 62.27 REMARK 500 3 PHE A 18 86.87 146.96 REMARK 500 3 LEU A 37 89.58 -56.87 REMARK 500 3 SER A 40 103.20 -41.66 REMARK 500 3 TYR A 42 -19.83 -49.46 REMARK 500 3 HIS A 46 141.47 77.88 REMARK 500 3 PRO A 98 87.98 -44.40 REMARK 500 3 LEU A 108 -73.25 -92.71 REMARK 500 4 MET A 14 -79.77 39.01 REMARK 500 4 MET A 16 38.72 73.95 REMARK 500 4 PHE A 18 106.46 149.16 REMARK 500 4 LEU A 37 88.95 -59.41 REMARK 500 4 SER A 40 101.75 -39.24 REMARK 500 4 PHE A 44 -2.26 -154.56 REMARK 500 4 TYR A 45 71.32 -68.13 REMARK 500 4 HIS A 46 106.41 69.97 REMARK 500 4 ALA A 75 -160.29 -79.70 REMARK 500 4 PRO A 98 99.01 -64.80 REMARK 500 4 LEU A 108 -67.61 -97.10 REMARK 500 5 ALA A 2 95.25 59.05 REMARK 500 5 ASP A 4 -72.53 -51.45 REMARK 500 5 MET A 14 -93.21 44.79 REMARK 500 5 MET A 16 35.08 71.35 REMARK 500 5 PHE A 18 110.50 155.06 REMARK 500 5 LEU A 37 95.38 -63.36 REMARK 500 5 PHE A 44 -8.84 -154.55 REMARK 500 5 HIS A 46 129.82 76.98 REMARK 500 5 ASN A 95 -21.14 -143.29 REMARK 500 5 LEU A 96 17.88 55.47 REMARK 500 5 PRO A 98 93.59 -58.51 REMARK 500 5 LEU A 108 -67.40 -103.37 REMARK 500 6 PHE A 18 97.94 150.52 REMARK 500 6 LEU A 37 90.25 -58.08 REMARK 500 6 SER A 40 98.86 -38.02 REMARK 500 6 TYR A 45 72.23 -64.86 REMARK 500 6 HIS A 46 110.29 68.41 REMARK 500 6 THR A 62 25.26 -142.69 REMARK 500 6 LEU A 96 25.73 49.35 REMARK 500 6 LEU A 108 -85.26 -95.80 REMARK 500 6 GLU A 110 168.68 48.31 REMARK 500 7 MET A 3 -57.92 -125.21 REMARK 500 7 LYS A 6 77.43 59.27 REMARK 500 7 MET A 14 -84.59 42.60 REMARK 500 7 PHE A 18 116.41 152.94 REMARK 500 7 LEU A 37 95.47 -63.80 REMARK 500 7 PHE A 44 35.36 -156.58 REMARK 500 7 TYR A 45 51.02 -109.85 REMARK 500 7 HIS A 46 115.88 73.80 REMARK 500 7 PRO A 98 98.92 -57.88 REMARK 500 7 LEU A 108 -60.18 -97.54 REMARK 500 8 ALA A 2 -167.38 59.80 REMARK 500 8 ASP A 4 -155.13 -92.03 REMARK 500 8 LYS A 6 88.19 63.40 REMARK 500 8 MET A 14 -87.78 42.05 REMARK 500 8 PHE A 18 114.40 148.34 REMARK 500 8 LEU A 37 97.15 -63.29 REMARK 500 8 PHE A 44 -9.16 -155.85 REMARK 500 8 TYR A 45 69.72 -65.91 REMARK 500 8 HIS A 46 130.33 72.49 REMARK 500 8 THR A 62 31.33 -147.69 REMARK 500 8 HIS A 77 31.70 -99.28 REMARK 500 8 LEU A 96 16.82 50.48 REMARK 500 8 PRO A 98 99.07 -60.29 REMARK 500 8 LEU A 108 -69.26 -91.12 REMARK 500 9 MET A 3 -178.53 -175.56 REMARK 500 9 SER A 5 -166.60 63.31 REMARK 500 9 MET A 14 -86.11 42.23 REMARK 500 9 MET A 16 38.49 72.91 REMARK 500 9 PHE A 18 109.54 152.19 REMARK 500 9 LEU A 37 92.78 -62.14 REMARK 500 9 TYR A 42 -9.60 -54.40 REMARK 500 9 PHE A 44 -3.19 -155.85 REMARK 500 9 TYR A 45 67.81 -65.95 REMARK 500 9 HIS A 46 115.22 71.84 REMARK 500 9 THR A 62 10.78 -144.80 REMARK 500 9 ASN A 95 -30.67 -144.57 REMARK 500 9 LEU A 108 -68.94 -91.23 REMARK 500 10 MET A 3 45.57 -90.14 REMARK 500 10 ASP A 4 -71.77 -140.44 REMARK 500 10 MET A 14 -85.72 39.82 REMARK 500 10 MET A 16 39.31 70.44 REMARK 500 10 PHE A 18 106.46 155.40 REMARK 500 10 LEU A 37 88.02 -63.31 REMARK 500 10 SER A 40 105.29 -39.32 REMARK 500 10 PHE A 44 -2.41 -154.54 REMARK 500 10 TYR A 45 69.27 -69.49 REMARK 500 10 HIS A 46 103.84 68.85 REMARK 500 10 LEU A 96 13.14 56.11 REMARK 500 10 PRO A 98 97.58 -65.72 REMARK 500 10 LEU A 108 -65.19 -102.43 REMARK 500 11 LYS A 6 80.29 52.78 REMARK 500 11 MET A 14 -85.49 38.74 REMARK 500 11 MET A 16 32.21 71.60 REMARK 500 11 PHE A 18 111.56 153.47 REMARK 500 11 LEU A 37 88.30 -63.58 REMARK 500 11 SER A 40 105.14 -37.60 REMARK 500 11 TYR A 45 70.61 -64.86 REMARK 500 11 HIS A 46 116.41 70.13 REMARK 500 11 THR A 62 31.24 -150.00 REMARK 500 11 HIS A 77 31.15 -97.48 REMARK 500 11 PRO A 98 96.71 -61.60 REMARK 500 11 LEU A 108 -76.67 -104.07 REMARK 500 12 ALA A 2 85.32 59.39 REMARK 500 12 MET A 3 93.50 68.37 REMARK 500 12 SER A 5 -80.67 73.18 REMARK 500 12 LYS A 6 93.72 59.85 REMARK 500 12 MET A 14 -86.40 43.14 REMARK 500 12 PHE A 18 100.67 150.85 REMARK 500 12 LEU A 37 91.21 -63.82 REMARK 500 12 PHE A 44 -5.80 -154.66 REMARK 500 12 TYR A 45 69.62 -65.97 REMARK 500 12 HIS A 46 128.90 73.83 REMARK 500 12 THR A 62 29.63 -147.21 REMARK 500 12 GLN A 70 107.62 -51.14 REMARK 500 12 ASN A 95 -26.37 -142.21 REMARK 500 12 LEU A 96 16.15 55.35 REMARK 500 12 PRO A 98 95.82 -60.65 REMARK 500 12 LEU A 108 -68.62 -121.88 REMARK 500 13 SER A 5 179.55 67.38 REMARK 500 13 MET A 14 -82.69 41.81 REMARK 500 13 PHE A 18 108.65 155.33 REMARK 500 13 LEU A 37 90.66 -58.76 REMARK 500 13 PHE A 44 -3.62 -153.20 REMARK 500 13 TYR A 45 69.69 -68.00 REMARK 500 13 HIS A 46 114.74 71.25 REMARK 500 13 THR A 62 42.34 -149.15 REMARK 500 13 PRO A 98 90.67 -62.43 REMARK 500 14 MET A 3 -53.11 -135.93 REMARK 500 14 ASP A 4 -73.32 69.01 REMARK 500 14 MET A 14 -80.53 34.97 REMARK 500 14 MET A 16 80.77 67.06 REMARK 500 14 LYS A 17 -64.28 -102.57 REMARK 500 14 PHE A 18 48.36 162.45 REMARK 500 14 LEU A 37 -65.85 -21.60 REMARK 500 14 SER A 40 105.42 -39.85 REMARK 500 14 HIS A 46 132.79 73.88 REMARK 500 14 SER A 68 -74.20 -68.21 REMARK 500 14 LEU A 96 14.76 57.35 REMARK 500 14 PRO A 98 95.48 -56.93 REMARK 500 15 MET A 3 -172.37 68.02 REMARK 500 15 MET A 14 -87.48 45.66 REMARK 500 15 MET A 16 33.96 77.21 REMARK 500 15 PHE A 18 102.97 142.13 REMARK 500 15 LEU A 37 90.51 -62.95 REMARK 500 15 SER A 40 104.36 -39.35 REMARK 500 15 PHE A 44 -4.25 -154.10 REMARK 500 15 HIS A 46 133.05 72.46 REMARK 500 15 THR A 62 47.79 -152.32 REMARK 500 15 GLN A 65 145.03 -171.04 REMARK 500 15 ALA A 75 -164.89 -78.26 REMARK 500 15 LEU A 96 2.71 58.50 REMARK 500 15 PRO A 98 102.89 -58.10 REMARK 500 15 LEU A 108 -72.25 -103.81 REMARK 500 16 ALA A 2 -68.29 -139.82 REMARK 500 16 MET A 3 -71.45 -112.89 REMARK 500 16 ASP A 4 -66.85 66.80 REMARK 500 16 SER A 5 83.64 -64.49 REMARK 500 16 MET A 14 -85.64 38.93 REMARK 500 16 PHE A 18 108.86 151.87 REMARK 500 16 LEU A 37 89.74 -59.88 REMARK 500 16 SER A 40 93.86 -41.51 REMARK 500 16 TYR A 42 -19.05 -48.98 REMARK 500 16 PHE A 44 14.34 -158.09 REMARK 500 16 HIS A 46 106.34 73.31 REMARK 500 16 THR A 62 28.07 -148.04 REMARK 500 16 ASN A 95 -29.84 -143.09 REMARK 500 16 PRO A 98 95.19 -66.86 REMARK 500 16 LEU A 108 -67.13 -91.42 REMARK 500 16 GLU A 110 -158.77 -95.47 REMARK 500 17 ASP A 4 -85.37 -176.94 REMARK 500 17 LYS A 6 81.77 48.66 REMARK 500 17 MET A 14 -86.10 34.97 REMARK 500 17 MET A 16 76.79 68.62 REMARK 500 17 PHE A 18 97.46 147.69 REMARK 500 17 LEU A 37 90.27 -56.54 REMARK 500 17 SER A 40 103.62 -39.39 REMARK 500 17 PHE A 44 -5.73 -153.53 REMARK 500 17 TYR A 45 68.12 -69.77 REMARK 500 17 HIS A 46 140.20 74.49 REMARK 500 17 LEU A 96 -9.81 58.62 REMARK 500 17 PRO A 98 102.76 -55.31 REMARK 500 17 LEU A 108 -63.22 -91.19 REMARK 500 18 MET A 3 -52.26 -172.38 REMARK 500 18 MET A 16 74.13 64.94 REMARK 500 18 PHE A 18 108.44 157.28 REMARK 500 18 LEU A 37 90.21 -60.13 REMARK 500 18 SER A 40 102.37 -36.32 REMARK 500 18 TYR A 42 -18.02 -47.75 REMARK 500 18 GLU A 43 -70.72 -65.08 REMARK 500 18 TYR A 45 63.98 -65.77 REMARK 500 18 HIS A 46 134.49 71.24 REMARK 500 18 THR A 62 20.66 -147.74 REMARK 500 18 ALA A 75 -163.74 60.43 REMARK 500 18 LEU A 96 25.27 49.73 REMARK 500 18 PRO A 98 102.57 -57.90 REMARK 500 18 LEU A 108 -66.07 -99.65 REMARK 500 19 ASP A 4 -78.77 65.18 REMARK 500 19 MET A 14 -85.74 33.71 REMARK 500 19 MET A 16 72.95 65.64 REMARK 500 19 PHE A 18 111.61 155.12 REMARK 500 19 LEU A 37 93.99 -69.02 REMARK 500 19 PHE A 44 -0.96 -155.47 REMARK 500 19 HIS A 46 109.22 71.81 REMARK 500 19 ALA A 75 -157.69 -80.23 REMARK 500 19 LEU A 96 28.27 49.31 REMARK 500 19 PRO A 98 96.26 -54.45 REMARK 500 19 LEU A 108 -80.22 -94.89 REMARK 500 20 MET A 14 -77.20 34.21 REMARK 500 20 MET A 16 34.03 71.53 REMARK 500 20 PHE A 18 129.83 161.32 REMARK 500 20 LEU A 37 -115.84 9.14 REMARK 500 20 PHE A 44 -11.06 -156.73 REMARK 500 20 TYR A 45 73.39 -61.84 REMARK 500 20 HIS A 46 95.29 64.54 REMARK 500 20 HIS A 77 31.10 -93.96 REMARK 500 20 PRO A 98 97.72 -55.33 REMARK 500 20 LEU A 108 -74.09 -113.15 REMARK 500 20 GLU A 110 -153.45 -86.70 REMARK 500 20 LYS A 113 78.95 -110.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 91 0.06 SIDE_CHAIN REMARK 500 14 TYR A 31 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1P97 A 4 114 UNP Q99814 EPAS1_HUMAN 240 350
SEQADV 1P97 GLY A 1 UNP Q99814 CLONING ARTIFACT SEQADV 1P97 ALA A 2 UNP Q99814 CLONING ARTIFACT SEQADV 1P97 MET A 3 UNP Q99814 CLONING ARTIFACT
SEQRES 1 A 114 GLY ALA MET ASP SER LYS THR PHE LEU SER ARG HIS SER SEQRES 2 A 114 MET ASP MET LYS PHE THR TYR CYS ASP ASP ARG ILE THR SEQRES 3 A 114 GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU LEU GLY ARG SEQRES 4 A 114 SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SER GLU ASN SEQRES 5 A 114 MET THR LYS SER HIS GLN ASN LEU CYS THR LYS GLY GLN SEQRES 6 A 114 VAL VAL SER GLY GLN TYR ARG MET LEU ALA LYS HIS GLY SEQRES 7 A 114 GLY TYR VAL TRP LEU GLU THR GLN GLY THR VAL ILE TYR SEQRES 8 A 114 ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE MET CYS VAL SEQRES 9 A 114 ASN TYR VAL LEU SER GLU ILE GLU LYS ASN
HELIX 1 1 ARG A 24 ILE A 29 1 6 HELIX 2 2 HIS A 32 LEU A 37 1 6 HELIX 3 3 SER A 40 PHE A 44 5 5 HELIX 4 4 ASP A 49 CYS A 61 1 13
SHEET 1 A 5 TYR A 20 CYS A 21 0 SHEET 2 A 5 LYS A 6 HIS A 12 -1 N ARG A 11 O TYR A 20 SHEET 3 A 5 PRO A 98 GLU A 112 -1 O VAL A 107 N LYS A 6 SHEET 4 A 5 TYR A 80 TYR A 91 -1 N TYR A 80 O GLU A 112 SHEET 5 A 5 GLN A 65 LEU A 74 -1 N MET A 73 O VAL A 81
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000