10 20 30 40 50 60 70 80 1P8S - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 07-MAY-03 1P8S
TITLE STRUCTURAL AND FUNCTIONAL IMPORTANCE OF FIRST-SHELL METAL TITLE 2 LIGANDS IN THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE I.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: ARGINASE I; COMPND 5 SYNONYM: LIVER-TYPE ARGINASE; COMPND 6 EC: 3.5.3.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29
KEYWDS HYDROLASE, UREA CYCLE, ARGININE METABOLISM, BINUCLEAR KEYWDS 2 MANGANESE CLUSTER
EXPDTA X-RAY DIFFRACTION
AUTHOR E.CAMA,F.A.EMIG,D.E.ASH,D.W.CHRISTIANSON
REVDAT 3 24-FEB-09 1P8S 1 VERSN REVDAT 2 15-JUL-03 1P8S 1 JRNL MASTER REVDAT 1 17-JUN-03 1P8S 0
JRNL AUTH E.CAMA,F.A.EMIG,D.E.ASH,D.W.CHRISTIANSON JRNL TITL STRUCTURAL AND FUNCTIONAL IMPORTANCE OF JRNL TITL 2 FIRST-SHELL METAL LIGANDS IN THE BINUCLEAR JRNL TITL 3 MANGANESE CLUSTER OF ARGINASE I JRNL REF BIOCHEMISTRY V. 42 7748 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12820884 JRNL DOI 10.1021/BI030074Y
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 13956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2236 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.66000 REMARK 3 B22 (A**2) : 3.66000 REMARK 3 B33 (A**2) : -7.31000 REMARK 3 B12 (A**2) : 9.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM SIGMAA (A) : 0.66 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.62 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.32 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.340 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 38.03 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CISPEP2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS:TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 3 : CNS:TOPPAR:WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : CISPEP.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1P8S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019150.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : RH-COATED SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13956 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1RLA REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.46000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.23000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 99 N - CA - C ANGL. DEV. = 25.3 DEGREES REMARK 500 GLY B 99 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 GLY C 99 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 64.55 -115.31 REMARK 500 PRO A 14 85.11 -68.44 REMARK 500 SER A 16 -15.15 -161.12 REMARK 500 LYS A 17 -7.01 -50.90 REMARK 500 ALA A 29 3.92 -63.43 REMARK 500 HIS A 50 41.13 -83.31 REMARK 500 GLN A 65 -97.06 52.38 REMARK 500 ALA A 85 -17.18 -49.35 REMARK 500 SER A 102 -12.59 -46.06 REMARK 500 PRO A 132 -8.85 -58.07 REMARK 500 GLN A 143 -15.24 -154.38 REMARK 500 PRO A 144 -46.68 -27.06 REMARK 500 PRO A 167 108.67 -38.21 REMARK 500 ILE A 189 -73.10 -36.66 REMARK 500 ALA A 243 55.93 -63.83 REMARK 500 SER A 271 -49.02 -143.21 REMARK 500 ARG A 291 -77.69 -53.82 REMARK 500 ASN A 294 -31.63 -37.47 REMARK 500 LEU A 301 -6.62 -57.75 REMARK 500 THR A 306 114.22 -28.15 REMARK 500 GLU A 315 -6.98 76.69 REMARK 500 TYR A 318 7.28 -68.89 REMARK 500 SER B 16 -16.64 -149.45 REMARK 500 GLN B 65 -98.41 56.61 REMARK 500 SER B 102 -11.50 -42.61 REMARK 500 ASP B 128 41.96 33.53 REMARK 500 PRO B 132 -11.77 -46.04 REMARK 500 GLN B 143 -11.59 -142.71 REMARK 500 PRO B 144 -39.58 -28.36 REMARK 500 PRO B 160 110.77 -39.68 REMARK 500 PRO B 167 106.97 -42.48 REMARK 500 ALA B 171 -11.19 -49.02 REMARK 500 ASP B 173 25.23 -77.70 REMARK 500 ARG B 180 -21.67 -154.50 REMARK 500 TYR B 188 -71.74 -52.28 REMARK 500 MET B 200 -36.68 -33.06 REMARK 500 ASP B 234 1.06 -60.52 REMARK 500 ALA B 243 48.55 -65.16 REMARK 500 THR B 246 79.08 -116.09 REMARK 500 VAL B 249 160.26 -43.83 REMARK 500 LYS B 266 -34.46 -32.40 REMARK 500 SER B 271 -50.80 -124.29 REMARK 500 ILE B 275 77.71 -119.37 REMARK 500 TYR B 318 7.55 -69.33 REMARK 500 PRO C 14 81.32 -68.21 REMARK 500 SER C 16 -15.94 -153.42 REMARK 500 LYS C 17 -2.79 -52.25 REMARK 500 GLN C 65 -102.87 52.42 REMARK 500 ASP C 100 163.67 -46.32 REMARK 500 ASP C 128 51.71 36.55 REMARK 500 PRO C 132 6.49 -56.58 REMARK 500 LEU C 149 139.17 -28.03 REMARK 500 PRO C 157 175.46 -50.51 REMARK 500 PRO C 160 108.78 -40.53 REMARK 500 PRO C 167 109.12 -45.60 REMARK 500 ALA C 171 -7.13 -54.10 REMARK 500 ARG C 180 -17.43 -161.34 REMARK 500 TYR C 188 -75.03 -55.96 REMARK 500 SER C 199 170.46 -49.13 REMARK 500 THR C 201 -56.82 -25.25 REMARK 500 VAL C 203 41.39 -81.50 REMARK 500 ASP C 204 -47.13 -135.82 REMARK 500 PRO C 226 154.22 -48.64 REMARK 500 PRO C 238 2.62 -60.20 REMARK 500 THR C 246 78.85 -113.33 REMARK 500 ILE C 275 67.98 -105.59 REMARK 500 THR C 306 105.48 -46.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 98 GLY A 99 88.74 REMARK 500 GLY B 98 GLY B 99 88.76 REMARK 500 GLY C 98 GLY C 99 88.51 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 234 OD2 85.7 REMARK 620 3 ASP A 124 OD2 86.6 100.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 128 OD1 90.8 REMARK 620 3 HIS A 101 ND1 95.1 83.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 126 ND1 REMARK 620 2 ASP B 234 OD2 91.8 REMARK 620 3 ASP B 124 OD2 90.5 89.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 ASP B 128 OD1 72.2 REMARK 620 3 HIS B 101 ND1 95.1 87.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 126 ND1 REMARK 620 2 ASP C 234 OD2 88.8 REMARK 620 3 ASP C 124 OD2 75.9 104.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 ASP C 128 OD1 66.6 REMARK 620 3 HIS C 101 ND1 91.1 118.8 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505
DBREF 1P8S A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1P8S B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1P8S C 6 319 UNP P07824 ARGI1_RAT 6 319
SEQADV 1P8S CYS A 232 UNP P07824 ASP 232 ENGINEERED SEQADV 1P8S CYS B 232 UNP P07824 ASP 232 ENGINEERED SEQADV 1P8S CYS C 232 UNP P07824 ASP 232 ENGINEERED
SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE CYS VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE CYS VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE CYS VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU
HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1
HETNAM MN MANGANESE (II) ION
FORMUL 4 MN 6(MN 2+) FORMUL 10 HOH *33(H2 O)
HELIX 1 1 GLY A 23 LYS A 26 5 4 HELIX 2 2 GLY A 27 ARG A 32 1 6 HELIX 3 3 GLY A 35 LYS A 41 1 7 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 SER A 170 LYS A 172 5 3 HELIX 10 10 ASP A 183 LEU A 193 1 11 HELIX 11 11 SER A 199 GLY A 207 1 9 HELIX 12 12 GLY A 207 LEU A 220 1 14 HELIX 13 13 ASP A 234 LEU A 236 5 3 HELIX 14 14 SER A 253 GLY A 268 1 16 HELIX 15 15 ASN A 279 GLY A 283 5 5 HELIX 16 16 THR A 285 ALA A 298 1 14 HELIX 17 17 LEU A 299 PHE A 304 1 6 HELIX 18 18 GLY B 23 GLU B 25 5 3 HELIX 19 19 LYS B 26 ALA B 34 1 9 HELIX 20 20 GLY B 35 LYS B 41 1 7 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 ASP B 100 SER B 102 5 3 HELIX 23 23 MET B 103 ARG B 113 1 11 HELIX 24 24 GLN B 143 LEU B 149 1 7 HELIX 25 25 LYS B 150 LYS B 153 5 4 HELIX 26 26 ASP B 183 LEU B 193 1 11 HELIX 27 27 MET B 200 LEU B 206 1 7 HELIX 28 28 LEU B 206 LEU B 220 1 15 HELIX 29 29 ASP B 234 LEU B 236 5 3 HELIX 30 30 SER B 253 GLY B 268 1 16 HELIX 31 31 THR B 285 LEU B 301 1 17 HELIX 32 32 GLY C 23 GLU C 25 5 3 HELIX 33 33 LYS C 26 GLY C 35 1 10 HELIX 34 34 GLY C 35 LYS C 41 1 7 HELIX 35 35 ASN C 69 LYS C 89 1 21 HELIX 36 36 ASP C 100 SER C 102 5 3 HELIX 37 37 MET C 103 ARG C 113 1 11 HELIX 38 38 ASN C 139 GLY C 142 5 4 HELIX 39 39 GLN C 143 LEU C 149 1 7 HELIX 40 40 ASP C 183 LEU C 193 1 11 HELIX 41 41 THR C 201 LEU C 206 1 6 HELIX 42 42 LEU C 206 GLY C 221 1 16 HELIX 43 43 ASP C 234 LEU C 236 5 3 HELIX 44 44 SER C 253 THR C 267 1 15 HELIX 45 45 ASN C 279 GLY C 283 5 5 HELIX 46 46 THR C 285 CYS C 303 1 19
SHEET 1 A 2 PRO A 7 ILE A 8 0 SHEET 2 A 2 ASN A 46 VAL A 47 1 O ASN A 46 N ILE A 8 SHEET 1 B 6 ILE A 11 ALA A 13 0 SHEET 2 B 6 SER A 94 GLY A 98 1 O LEU A 97 N ALA A 13 SHEET 3 B 6 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 4 B 6 ILE A 227 CYS A 232 1 N LEU A 229 O GLY A 272 SHEET 5 B 6 CYS A 119 VAL A 123 1 N VAL A 123 O CYS A 232 SHEET 6 B 6 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 1 C 8 ASN B 46 ASP B 52 0 SHEET 2 C 8 PRO B 7 ALA B 13 1 N GLY B 12 O GLY B 51 SHEET 3 C 8 ILE B 93 GLY B 98 1 O LEU B 97 N ALA B 13 SHEET 4 C 8 LEU B 270 MET B 276 1 O LEU B 273 N SER B 94 SHEET 5 C 8 ILE B 227 CYS B 232 1 N LEU B 229 O GLY B 272 SHEET 6 C 8 CYS B 119 VAL B 123 1 N VAL B 123 O CYS B 232 SHEET 7 C 8 ILE B 174 LEU B 179 1 O ILE B 177 N TRP B 122 SHEET 8 C 8 LYS B 196 SER B 199 1 O LYS B 196 N TYR B 176 SHEET 1 D 8 ASN C 46 ASP C 52 0 SHEET 2 D 8 PRO C 7 ALA C 13 1 N ILE C 10 O HIS C 50 SHEET 3 D 8 ILE C 93 GLY C 98 1 O LEU C 97 N ALA C 13 SHEET 4 D 8 LEU C 270 MET C 276 1 O LEU C 273 N SER C 94 SHEET 5 D 8 ILE C 227 CYS C 232 1 N ILE C 227 O SER C 271 SHEET 6 D 8 CYS C 119 VAL C 123 1 N VAL C 123 O CYS C 232 SHEET 7 D 8 ILE C 174 ILE C 177 1 O VAL C 175 N VAL C 120 SHEET 8 D 8 LYS C 196 PHE C 198 1 O PHE C 198 N TYR C 176
LINK MN MN A 500 ND1 HIS A 126 1555 1555 2.44 LINK MN MN A 500 OD2 ASP A 234 1555 1555 2.51 LINK MN MN A 500 OD2 ASP A 124 1555 1555 2.34 LINK MN MN A 501 OD1 ASP A 124 1555 1555 2.09 LINK MN MN A 501 OD1 ASP A 128 1555 1555 2.13 LINK MN MN A 501 ND1 HIS A 101 1555 1555 2.12 LINK MN MN B 502 ND1 HIS B 126 1555 1555 2.50 LINK MN MN B 502 OD2 ASP B 234 1555 1555 2.34 LINK MN MN B 502 OD2 ASP B 124 1555 1555 2.37 LINK MN MN B 503 OD1 ASP B 124 1555 1555 2.14 LINK MN MN B 503 OD1 ASP B 128 1555 1555 2.39 LINK MN MN B 503 ND1 HIS B 101 1555 1555 2.29 LINK MN MN C 504 ND1 HIS C 126 1555 1555 2.25 LINK MN MN C 504 OD2 ASP C 234 1555 1555 2.43 LINK MN MN C 504 OD2 ASP C 124 1555 1555 2.23 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.15 LINK MN MN C 505 OD1 ASP C 128 1555 1555 2.11 LINK MN MN C 505 ND1 HIS C 101 1555 1555 2.19
SITE 1 AC1 6 ASP A 124 HIS A 126 ASP A 128 CYS A 232 SITE 2 AC1 6 ASP A 234 MN A 501 SITE 1 AC2 5 HIS A 101 ASP A 124 ASP A 128 CYS A 232 SITE 2 AC2 5 MN A 500 SITE 1 AC3 6 ASP B 124 HIS B 126 ASP B 128 CYS B 232 SITE 2 AC3 6 ASP B 234 MN B 503 SITE 1 AC4 5 HIS B 101 ASP B 124 ASP B 128 CYS B 232 SITE 2 AC4 5 MN B 502 SITE 1 AC5 6 ASP C 124 HIS C 126 ASP C 128 CYS C 232 SITE 2 AC5 6 ASP C 234 MN C 505 SITE 1 AC6 5 HIS C 101 ASP C 124 ASP C 128 CYS C 232 SITE 2 AC6 5 MN C 504
CRYST1 90.940 90.940 105.690 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010996 0.006349 0.000000 0.00000
SCALE2 0.000000 0.012697 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009462 0.00000