10 20 30 40 50 60 70 80 1P72 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 30-APR-03 1P72
TITLE CRYSTAL STRUCTURE OF EHV4-TK COMPLEXED WITH THY AND ADP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: EQUINE HERPESVIRUS 4; SOURCE 4 ORGANISM_TAXID: 10331; SOURCE 5 STRAIN: 1942; SOURCE 6 GENE: TK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 C41 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUT699
KEYWDS P-LOOP, LID, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.GARDBERG,L.SHUVALOVA,C.MONNERJAHN,M.KONRAD,A.LAVIE
REVDAT 2 24-FEB-09 1P72 1 VERSN REVDAT 1 04-NOV-03 1P72 0
JRNL AUTH A.GARDBERG,L.SHUVALOVA,C.MONNERJAHN,M.KONRAD, JRNL AUTH 2 A.LAVIE JRNL TITL STRUCTURAL BASIS FOR THE DUAL THYMIDINE AND JRNL TITL 2 THYMIDYLATE KINASE ACTIVITY OF HERPES THYMIDINE JRNL TITL 3 KINASES. JRNL REF STRUCTURE V. 11 1265 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 14527394 JRNL DOI 10.1016/J.STR.2003.09.003
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 41415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 334 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.278 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5242 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7150 ; 1.343 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 649 ; 5.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3885 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2600 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 476 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3246 ; 0.718 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5208 ; 1.329 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 1.953 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1942 ; 3.040 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1P72 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019088.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VTK WITH UNCONSERVED RESIDUES REMARK 200 MODIFIED TO ALANINE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, MES, DIOXANE , PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.40400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.40400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.15050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.50700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.15050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.50700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.40400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.15050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.50700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.40400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.15050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.50700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 178.21200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 56.15050 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 60.50700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 59.40400 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -56.15050 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 60.50700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 118.80800 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -334.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 118.80800 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -229.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 121.01400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 118.80800 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -56.15050 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 60.50700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -56.15050 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 60.50700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 118.80800
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 ARG A 83 REMARK 465 LYS A 84 REMARK 465 GLN A 85 REMARK 465 GLN A 86 REMARK 465 GLY A 87 REMARK 465 ASN A 88 REMARK 465 LEU A 89 REMARK 465 ALA A 90 REMARK 465 VAL A 91 REMARK 465 ASP A 92 REMARK 465 GLY B 19 REMARK 465 GLY B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 199 CG1 CG2 CD1 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 SER B 20 OG REMARK 470 HIS B 21 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 GLN B 86 CG CD OE1 NE2 REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 VAL B 91 CG1 CG2 REMARK 470 ASP B 92 CG OD1 OD2 REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 199 CG1 CG2 CD1 REMARK 470 ILE B 203 CG1 CG2 CD1 REMARK 470 SER B 260 OG REMARK 470 ARG B 280 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 313 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 352 CG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1003 O HOH A 1033 1.91 REMARK 500 O VAL B 91 N ASP B 93 2.07 REMARK 500 O VAL B 352 O HOH B 990 2.16 REMARK 500 OE2 GLU A 285 O HOH A 997 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 79 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 332 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 139 147.46 74.73 REMARK 500 VAL A 146 -61.05 -129.35 REMARK 500 LEU A 184 136.41 -173.87 REMARK 500 ARG A 198 -118.83 -46.14 REMARK 500 ILE A 199 57.01 -154.39 REMARK 500 CYS A 242 -141.08 -107.62 REMARK 500 ASP A 278 -160.84 -78.61 REMARK 500 SER A 331 -164.51 -111.94 REMARK 500 ALA B 90 19.49 -63.05 REMARK 500 VAL B 91 -137.71 56.08 REMARK 500 ASP B 92 -65.74 32.28 REMARK 500 ARG B 139 148.02 75.08 REMARK 500 VAL B 146 -53.68 -129.05 REMARK 500 CYS B 242 -140.45 -103.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 802 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 804 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 806 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 807 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 808 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 809 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 701 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 502 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM B 702
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P6X RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH THY AND SO4 REMARK 900 RELATED ID: 1P73 RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH TP4A REMARK 900 RELATED ID: 1P75 RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH TP5A REMARK 900 RELATED ID: 1P7C RELATED DB: PDB REMARK 900 HSV1-TK COMPLEXED WITH TP5A
DBREF 1P72 A 23 352 UNP P24425 KITH_EHV4 23 352 DBREF 1P72 B 23 352 UNP P24425 KITH_EHV4 23 352
SEQADV 1P72 GLY A 19 UNP P24425 CLONING ARTIFACT SEQADV 1P72 SER A 20 UNP P24425 CLONING ARTIFACT SEQADV 1P72 HIS A 21 UNP P24425 CLONING ARTIFACT SEQADV 1P72 MET A 22 UNP P24425 CLONING ARTIFACT SEQADV 1P72 GLY B 19 UNP P24425 CLONING ARTIFACT SEQADV 1P72 SER B 20 UNP P24425 CLONING ARTIFACT SEQADV 1P72 HIS B 21 UNP P24425 CLONING ARTIFACT SEQADV 1P72 MET B 22 UNP P24425 CLONING ARTIFACT
SEQRES 1 A 334 GLY SER HIS MET VAL THR ILE VAL ARG ILE TYR LEU ASP SEQRES 2 A 334 GLY VAL TYR GLY ILE GLY LYS SER THR THR GLY ARG VAL SEQRES 3 A 334 MET ALA SER ALA ALA SER GLY GLY SER PRO THR LEU TYR SEQRES 4 A 334 PHE PRO GLU PRO MET ALA TYR TRP ARG THR LEU PHE GLU SEQRES 5 A 334 THR ASP VAL ILE SER GLY ILE TYR ASP THR GLN ASN ARG SEQRES 6 A 334 LYS GLN GLN GLY ASN LEU ALA VAL ASP ASP ALA ALA LEU SEQRES 7 A 334 ILE THR ALA HIS TYR GLN SER ARG PHE THR THR PRO TYR SEQRES 8 A 334 LEU ILE LEU HIS ASP HIS THR CYS THR LEU PHE GLY GLY SEQRES 9 A 334 ASN SER LEU GLN ARG GLY THR GLN PRO ASP LEU THR LEU SEQRES 10 A 334 VAL PHE ASP ARG HIS PRO VAL ALA SER THR VAL CYS PHE SEQRES 11 A 334 PRO ALA ALA ARG TYR LEU LEU GLY ASP MET SER MET CYS SEQRES 12 A 334 ALA LEU MET ALA MET VAL ALA THR LEU PRO ARG GLU PRO SEQRES 13 A 334 GLN GLY GLY ASN ILE VAL VAL THR THR LEU ASN VAL GLU SEQRES 14 A 334 GLU HIS ILE ARG ARG LEU ARG THR ARG ALA ARG ILE GLY SEQRES 15 A 334 GLU GLN ILE ASP ILE THR LEU ILE ALA THR LEU ARG ASN SEQRES 16 A 334 VAL TYR PHE MET LEU VAL ASN THR CYS HIS PHE LEU ARG SEQRES 17 A 334 SER GLY ARG VAL TRP ARG ASP GLY TRP GLY GLU LEU PRO SEQRES 18 A 334 THR SER CYS GLY ALA TYR LYS HIS ARG ALA THR GLN MET SEQRES 19 A 334 ASP ALA PHE GLN GLU ARG VAL SER PRO GLU LEU GLY ASP SEQRES 20 A 334 THR LEU PHE ALA LEU PHE LYS THR GLN GLU LEU LEU ASP SEQRES 21 A 334 ASP ARG GLY VAL ILE LEU GLU VAL HIS ALA TRP ALA LEU SEQRES 22 A 334 ASP ALA LEU MET LEU LYS LEU ARG ASN LEU ASN VAL PHE SEQRES 23 A 334 SER ALA ASP LEU SER GLY THR PRO ARG GLN CYS ALA ALA SEQRES 24 A 334 VAL VAL GLU SER LEU LEU PRO LEU MET SER SER THR LEU SEQRES 25 A 334 SER ASP PHE ASP SER ALA SER ALA LEU GLU ARG ALA ALA SEQRES 26 A 334 ARG THR PHE ASN ALA GLU MET GLY VAL SEQRES 1 B 334 GLY SER HIS MET VAL THR ILE VAL ARG ILE TYR LEU ASP SEQRES 2 B 334 GLY VAL TYR GLY ILE GLY LYS SER THR THR GLY ARG VAL SEQRES 3 B 334 MET ALA SER ALA ALA SER GLY GLY SER PRO THR LEU TYR SEQRES 4 B 334 PHE PRO GLU PRO MET ALA TYR TRP ARG THR LEU PHE GLU SEQRES 5 B 334 THR ASP VAL ILE SER GLY ILE TYR ASP THR GLN ASN ARG SEQRES 6 B 334 LYS GLN GLN GLY ASN LEU ALA VAL ASP ASP ALA ALA LEU SEQRES 7 B 334 ILE THR ALA HIS TYR GLN SER ARG PHE THR THR PRO TYR SEQRES 8 B 334 LEU ILE LEU HIS ASP HIS THR CYS THR LEU PHE GLY GLY SEQRES 9 B 334 ASN SER LEU GLN ARG GLY THR GLN PRO ASP LEU THR LEU SEQRES 10 B 334 VAL PHE ASP ARG HIS PRO VAL ALA SER THR VAL CYS PHE SEQRES 11 B 334 PRO ALA ALA ARG TYR LEU LEU GLY ASP MET SER MET CYS SEQRES 12 B 334 ALA LEU MET ALA MET VAL ALA THR LEU PRO ARG GLU PRO SEQRES 13 B 334 GLN GLY GLY ASN ILE VAL VAL THR THR LEU ASN VAL GLU SEQRES 14 B 334 GLU HIS ILE ARG ARG LEU ARG THR ARG ALA ARG ILE GLY SEQRES 15 B 334 GLU GLN ILE ASP ILE THR LEU ILE ALA THR LEU ARG ASN SEQRES 16 B 334 VAL TYR PHE MET LEU VAL ASN THR CYS HIS PHE LEU ARG SEQRES 17 B 334 SER GLY ARG VAL TRP ARG ASP GLY TRP GLY GLU LEU PRO SEQRES 18 B 334 THR SER CYS GLY ALA TYR LYS HIS ARG ALA THR GLN MET SEQRES 19 B 334 ASP ALA PHE GLN GLU ARG VAL SER PRO GLU LEU GLY ASP SEQRES 20 B 334 THR LEU PHE ALA LEU PHE LYS THR GLN GLU LEU LEU ASP SEQRES 21 B 334 ASP ARG GLY VAL ILE LEU GLU VAL HIS ALA TRP ALA LEU SEQRES 22 B 334 ASP ALA LEU MET LEU LYS LEU ARG ASN LEU ASN VAL PHE SEQRES 23 B 334 SER ALA ASP LEU SER GLY THR PRO ARG GLN CYS ALA ALA SEQRES 24 B 334 VAL VAL GLU SER LEU LEU PRO LEU MET SER SER THR LEU SEQRES 25 B 334 SER ASP PHE ASP SER ALA SER ALA LEU GLU ARG ALA ALA SEQRES 26 B 334 ARG THR PHE ASN ALA GLU MET GLY VAL
HET SO4 A 801 5 HET SO4 B 802 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET SO4 B 807 5 HET SO4 B 808 5 HET SO4 B 809 5 HET ADP A 501 27 HET THM A 701 17 HET ADP B 502 27 HET THM B 702 17
HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM THM THYMIDINE
HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE
FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 ADP 2(C10 H15 N5 O10 P2) FORMUL 13 THM 2(C10 H14 N2 O5) FORMUL 16 HOH *443(H2 O)
HELIX 1 1 GLY A 37 SER A 47 1 11 HELIX 2 2 ALA A 48 GLY A 51 5 4 HELIX 3 3 PRO A 61 THR A 67 1 7 HELIX 4 4 ASP A 72 ASN A 82 1 11 HELIX 5 5 ASP A 93 CYS A 117 1 25 HELIX 6 6 PRO A 141 VAL A 146 1 6 HELIX 7 7 VAL A 146 LEU A 155 1 10 HELIX 8 8 SER A 159 ALA A 168 1 10 HELIX 9 9 ASN A 185 ALA A 197 1 13 HELIX 10 10 ASP A 204 SER A 227 1 24 HELIX 11 11 CYS A 242 GLN A 251 1 10 HELIX 12 12 GLU A 262 LYS A 272 5 11 HELIX 13 13 THR A 273 LEU A 277 5 5 HELIX 14 14 LEU A 284 ARG A 299 1 16 HELIX 15 15 THR A 311 SER A 321 1 11 HELIX 16 16 LEU A 322 MET A 326 5 5 HELIX 17 17 PHE A 333 GLY A 351 1 19 HELIX 18 18 GLY B 37 SER B 47 1 11 HELIX 19 19 PRO B 61 THR B 67 1 7 HELIX 20 20 ASP B 72 GLN B 86 1 15 HELIX 21 21 ASP B 92 CYS B 117 1 26 HELIX 22 22 PRO B 141 VAL B 146 1 6 HELIX 23 23 VAL B 146 LEU B 155 1 10 HELIX 24 24 SER B 159 ALA B 168 1 10 HELIX 25 25 ASN B 185 ARG B 196 1 12 HELIX 26 26 ASP B 204 SER B 227 1 24 HELIX 27 27 CYS B 242 THR B 250 1 9 HELIX 28 28 GLU B 262 LYS B 272 5 11 HELIX 29 29 THR B 273 LEU B 277 5 5 HELIX 30 30 LEU B 284 ARG B 299 1 16 HELIX 31 31 THR B 311 SER B 321 1 11 HELIX 32 32 LEU B 322 MET B 326 5 5 HELIX 33 33 ASP B 332 GLY B 351 1 20
SHEET 1 A 5 LEU A 301 ASP A 307 0 SHEET 2 A 5 GLY A 177 THR A 183 1 N VAL A 181 O PHE A 304 SHEET 3 A 5 MET A 22 ASP A 31 1 N ASP A 31 O VAL A 180 SHEET 4 A 5 LEU A 133 ASP A 138 1 O PHE A 137 N ILE A 28 SHEET 5 A 5 THR A 55 PHE A 58 1 N LEU A 56 O VAL A 136 SHEET 1 B 5 LEU A 301 ASP A 307 0 SHEET 2 B 5 GLY A 177 THR A 183 1 N VAL A 181 O PHE A 304 SHEET 3 B 5 MET A 22 ASP A 31 1 N ASP A 31 O VAL A 180 SHEET 4 B 5 SER A 328 ASP A 332 -1 O SER A 331 N VAL A 23 SHEET 5 B 5 GLY A 122 LEU A 125 -1 N GLY A 122 O LEU A 330 SHEET 1 C 5 LEU B 301 ASP B 307 0 SHEET 2 C 5 GLY B 177 THR B 183 1 N THR B 183 O ALA B 306 SHEET 3 C 5 VAL B 23 ASP B 31 1 N TYR B 29 O VAL B 180 SHEET 4 C 5 LEU B 133 ASP B 138 1 O PHE B 137 N ILE B 28 SHEET 5 C 5 THR B 55 PHE B 58 1 N PHE B 58 O VAL B 136 SHEET 1 D 5 LEU B 301 ASP B 307 0 SHEET 2 D 5 GLY B 177 THR B 183 1 N THR B 183 O ALA B 306 SHEET 3 D 5 VAL B 23 ASP B 31 1 N TYR B 29 O VAL B 180 SHEET 4 D 5 SER B 328 SER B 331 -1 O SER B 331 N VAL B 23 SHEET 5 D 5 GLY B 122 LEU B 125 -1 N GLY B 122 O LEU B 330
SITE 1 AC1 7 PHE A 69 GLU A 70 THR A 71 ARG A 104 SITE 2 AC1 7 HOH A 846 HOH A 881 SER B 159 SITE 1 AC2 8 SER A 159 HOH A 847 PHE B 69 GLU B 70 SITE 2 AC2 8 THR B 71 ARG B 104 HOH B 873 HOH B 963 SITE 1 AC3 3 ARG A 172 PRO A 174 GLN A 175 SITE 1 AC4 3 GLN A 202 LEU B 125 ARG B 127 SITE 1 AC5 2 ARG A 313 GLN A 314 SITE 1 AC6 3 ARG A 172 HOH A 937 ARG B 172 SITE 1 AC7 3 ARG B 172 PRO B 174 GLN B 175 SITE 1 AC8 2 THR B 311 HOH B 861 SITE 1 AC9 3 THR A 129 GLN A 130 ARG B 194 SITE 1 BC1 22 VAL A 33 TYR A 34 GLY A 35 ILE A 36 SITE 2 BC1 22 GLY A 37 LYS A 38 SER A 39 THR A 40 SITE 3 BC1 22 ARG A 192 ARG A 196 GLY A 310 THR A 311 SITE 4 BC1 22 PRO A 312 CYS A 315 HOH A 809 HOH A 819 SITE 5 BC1 22 HOH A 829 HOH A 852 HOH A 870 HOH A 900 SITE 6 BC1 22 HOH A 906 HOH A1030 SITE 1 BC2 11 TYR A 34 GLU A 60 ILE A 74 TYR A 78 SITE 2 BC2 11 GLN A 102 PHE A 105 ARG A 139 SER A 144 SITE 3 BC2 11 PHE A 148 HOH A 872 HOH A 957 SITE 1 BC3 18 TYR B 34 GLY B 35 ILE B 36 GLY B 37 SITE 2 BC3 18 LYS B 38 SER B 39 THR B 40 ARG B 192 SITE 3 BC3 18 THR B 195 ARG B 196 GLY B 310 THR B 311 SITE 4 BC3 18 PRO B 312 CYS B 315 HOH B 815 HOH B 823 SITE 5 BC3 18 HOH B 855 HOH B 912 SITE 1 BC4 11 TYR B 34 GLU B 60 ILE B 74 GLN B 102 SITE 2 BC4 11 PHE B 105 SER B 144 PHE B 148 GLU B 201 SITE 3 BC4 11 HOH B 827 HOH B 893 HOH B 925
CRYST1 112.301 121.014 118.808 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008905 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008264 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008417 0.00000