10 20 30 40 50 60 70 80 1P6C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 29-APR-03 1P6C
TITLE CRYSTAL STRUCTURE OF PHOSPHOTRIESTERASE TRIPLE MUTANT TITLE 2 H254G/H257W/L303T COMPLEXED WITH TITLE 3 DIISOPROPYLMETHYLPHOSPHONATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE, PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 239; SOURCE 4 GENE: OPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS METALLOENZYME, TIM BARREL, NERVE AGENT, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.M.HILL,W.LI,J.B.THODEN,H.M.HOLDEN,F.M.RAUSHEL
REVDAT 3 23-JUN-09 1P6C 1 MODRES REVDAT 2 24-FEB-09 1P6C 1 VERSN REVDAT 1 16-SEP-03 1P6C 0
JRNL AUTH C.M.HILL,W.S.LI,J.B.THODEN,H.M.HOLDEN,F.M.RAUSHEL JRNL TITL ENHANCED DEGRADATION OF CHEMICAL WARFARE AGENTS JRNL TITL 2 THROUGH MOLECULAR ENGINEERING OF THE JRNL TITL 3 PHOSPHOTRIESTERASE ACTIVE SITE. JRNL REF J.AM.CHEM.SOC. V. 125 8990 2003 JRNL REFN ISSN 0002-7863 JRNL PMID 15369336 JRNL DOI 10.1021/JA0358798
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 47394 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4728 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1850 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 47394 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.200 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1P6C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019062.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : SUPPER LONG MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FRAMBO REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1P6B REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CHES, NACL, DIETHYL 4- REMARK 280 METHYLBENZYLPHOSPHONATE, DIISOPROPYLMETHYLPHOSPHONATE, PH 9, REMARK 280 BATCH, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 ILE A 31 REMARK 465 GLY A 32 REMARK 465 THR A 33 REMARK 465 SER A 365 REMARK 465 SER B 30 REMARK 465 ILE B 31 REMARK 465 GLY B 32 REMARK 465 THR B 33 REMARK 465 GLY B 34 REMARK 465 SER B 365
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 48 CD GLU A 48 OE2 0.067 REMARK 500 GLU A 115 CD GLU A 115 OE2 0.066 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.079 REMARK 500 GLU B 81 CD GLU B 81 OE2 0.077 REMARK 500 GLU B 181 CD GLU B 181 OE2 0.071 REMARK 500 GLU B 338 CD GLU B 338 OE2 0.090 REMARK 500 GLU B 344 CD GLU B 344 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 160 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 289 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 301 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 301 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 318 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 319 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 363 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 89 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 100 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 109 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 109 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 121 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 139 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 225 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 225 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 232 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 232 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 233 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 233 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 264 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 289 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 301 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP B 315 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 315 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -141.86 -141.54 REMARK 500 VAL A 101 31.42 -90.27 REMARK 500 TRP A 131 -151.32 -94.12 REMARK 500 GLU A 159 -128.21 59.67 REMARK 500 ALA A 203 79.77 -103.66 REMARK 500 ASP A 236 85.02 -59.93 REMARK 500 LEU A 252 79.42 -106.60 REMARK 500 SER A 308 32.16 -82.54 REMARK 500 ASN A 312 16.89 80.67 REMARK 500 GLU A 338 -1.78 -58.05 REMARK 500 PHE B 51 109.74 -45.80 REMARK 500 SER B 61 -141.39 -134.69 REMARK 500 TRP B 131 -146.82 -101.20 REMARK 500 GLU B 159 -125.00 54.35 REMARK 500 ALA B 203 78.69 -103.32 REMARK 500 ILE B 260 107.16 -50.52 REMARK 500 ASN B 312 4.31 84.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 54 23.0 L L OUTSIDE RANGE REMARK 500 SER A 238 24.6 L L OUTSIDE RANGE REMARK 500 ILE A 255 21.9 L L OUTSIDE RANGE REMARK 500 LEU A 282 24.4 L L OUTSIDE RANGE REMARK 500 ASN A 312 22.9 L L OUTSIDE RANGE REMARK 500 ILE B 255 24.9 L L OUTSIDE RANGE REMARK 500 GLU B 263 24.8 L L OUTSIDE RANGE REMARK 500 LEU B 358 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 489 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 5.89 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 230 NE2 REMARK 620 2 HIS A 201 ND1 92.3 REMARK 620 3 KCX A 169 OQ2 104.3 94.5 REMARK 620 4 DII A 7 O1 140.0 82.5 115.6 REMARK 620 5 HOH A 456 O 98.3 156.9 102.5 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 HIS A 55 NE2 122.0 REMARK 620 3 ASP A 301 OD1 87.5 84.6 REMARK 620 4 KCX A 169 OQ1 96.3 101.2 169.8 REMARK 620 5 HOH A 456 O 132.9 104.4 88.8 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 HIS B 201 ND1 94.4 REMARK 620 3 KCX B 169 OQ1 113.4 93.2 REMARK 620 4 HOH B 16 O 88.6 162.0 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 57 NE2 REMARK 620 2 HIS B 55 NE2 114.4 REMARK 620 3 ASP B 301 OD1 91.9 86.5 REMARK 620 4 KCX B 169 OQ2 90.1 94.4 177.2 REMARK 620 5 HOH B 16 O 137.5 108.1 91.4 85.8 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP A 5 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP B 6 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII A 7 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DII B 8
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P6B RELATED DB: PDB REMARK 900 SAME PROTEIN IN "APO" FORM
DBREF 1P6C A 30 365 UNP P0A433 OPD_FLASP 30 365 DBREF 1P6C B 30 365 UNP P0A433 OPD_FLASP 30 365
SEQADV 1P6C GLY A 254 UNP P0A433 HIS 254 ENGINEERED SEQADV 1P6C TRP A 257 UNP P0A433 HIS 257 ENGINEERED SEQADV 1P6C THR A 303 UNP P0A433 LEU 303 ENGINEERED SEQADV 1P6C GLY B 254 UNP P0A433 HIS 254 ENGINEERED SEQADV 1P6C TRP B 257 UNP P0A433 HIS 257 ENGINEERED SEQADV 1P6C THR B 303 UNP P0A433 LEU 303 ENGINEERED
SEQRES 1 A 336 SER ILE GLY THR GLY ASP ARG ILE ASN THR VAL ARG GLY SEQRES 2 A 336 PRO ILE THR ILE SER GLU ALA GLY PHE THR LEU THR HIS SEQRES 3 A 336 GLU HIS ILE CYS GLY SER SER ALA GLY PHE LEU ARG ALA SEQRES 4 A 336 TRP PRO GLU PHE PHE GLY SER ARG LYS ALA LEU ALA GLU SEQRES 5 A 336 LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY SEQRES 6 A 336 VAL ARG THR ILE VAL ASP VAL SER THR PHE ASP ILE GLY SEQRES 7 A 336 ARG ASP VAL SER LEU LEU ALA GLU VAL SER ARG ALA ALA SEQRES 8 A 336 ASP VAL HIS ILE VAL ALA ALA THR GLY LEU TRP PHE ASP SEQRES 9 A 336 PRO PRO LEU SER MET ARG LEU ARG SER VAL GLU GLU LEU SEQRES 10 A 336 THR GLN PHE PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU SEQRES 11 A 336 ASP THR GLY ILE ARG ALA GLY ILE ILE KCX VAL ALA THR SEQRES 12 A 336 THR GLY LYS ALA THR PRO PHE GLN GLU LEU VAL LEU LYS SEQRES 13 A 336 ALA ALA ALA ARG ALA SER LEU ALA THR GLY VAL PRO VAL SEQRES 14 A 336 THR THR HIS THR ALA ALA SER GLN ARG ASP GLY GLU GLN SEQRES 15 A 336 GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SER PRO SER SEQRES 16 A 336 ARG VAL CYS ILE GLY HIS SER ASP ASP THR ASP ASP LEU SEQRES 17 A 336 SER TYR LEU THR ALA LEU ALA ALA ARG GLY TYR LEU ILE SEQRES 18 A 336 GLY LEU ASP GLY ILE PRO TRP SER ALA ILE GLY LEU GLU SEQRES 19 A 336 ASP ASN ALA SER ALA SER ALA LEU LEU GLY ILE ARG SER SEQRES 20 A 336 TRP GLN THR ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP SEQRES 21 A 336 GLN GLY TYR MET LYS GLN ILE LEU VAL SER ASN ASP TRP SEQRES 22 A 336 THR PHE GLY PHE SER SER TYR VAL THR ASN ILE MET ASP SEQRES 23 A 336 VAL MET ASP ARG VAL ASN PRO ASP GLY MET ALA PHE ILE SEQRES 24 A 336 PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU LYS GLY VAL SEQRES 25 A 336 PRO GLN GLU THR LEU ALA GLY ILE THR VAL THR ASN PRO SEQRES 26 A 336 ALA ARG PHE LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 336 SER ILE GLY THR GLY ASP ARG ILE ASN THR VAL ARG GLY SEQRES 2 B 336 PRO ILE THR ILE SER GLU ALA GLY PHE THR LEU THR HIS SEQRES 3 B 336 GLU HIS ILE CYS GLY SER SER ALA GLY PHE LEU ARG ALA SEQRES 4 B 336 TRP PRO GLU PHE PHE GLY SER ARG LYS ALA LEU ALA GLU SEQRES 5 B 336 LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY SEQRES 6 B 336 VAL ARG THR ILE VAL ASP VAL SER THR PHE ASP ILE GLY SEQRES 7 B 336 ARG ASP VAL SER LEU LEU ALA GLU VAL SER ARG ALA ALA SEQRES 8 B 336 ASP VAL HIS ILE VAL ALA ALA THR GLY LEU TRP PHE ASP SEQRES 9 B 336 PRO PRO LEU SER MET ARG LEU ARG SER VAL GLU GLU LEU SEQRES 10 B 336 THR GLN PHE PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU SEQRES 11 B 336 ASP THR GLY ILE ARG ALA GLY ILE ILE KCX VAL ALA THR SEQRES 12 B 336 THR GLY LYS ALA THR PRO PHE GLN GLU LEU VAL LEU LYS SEQRES 13 B 336 ALA ALA ALA ARG ALA SER LEU ALA THR GLY VAL PRO VAL SEQRES 14 B 336 THR THR HIS THR ALA ALA SER GLN ARG ASP GLY GLU GLN SEQRES 15 B 336 GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SER PRO SER SEQRES 16 B 336 ARG VAL CYS ILE GLY HIS SER ASP ASP THR ASP ASP LEU SEQRES 17 B 336 SER TYR LEU THR ALA LEU ALA ALA ARG GLY TYR LEU ILE SEQRES 18 B 336 GLY LEU ASP GLY ILE PRO TRP SER ALA ILE GLY LEU GLU SEQRES 19 B 336 ASP ASN ALA SER ALA SER ALA LEU LEU GLY ILE ARG SER SEQRES 20 B 336 TRP GLN THR ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP SEQRES 21 B 336 GLN GLY TYR MET LYS GLN ILE LEU VAL SER ASN ASP TRP SEQRES 22 B 336 THR PHE GLY PHE SER SER TYR VAL THR ASN ILE MET ASP SEQRES 23 B 336 VAL MET ASP ARG VAL ASN PRO ASP GLY MET ALA PHE ILE SEQRES 24 B 336 PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU LYS GLY VAL SEQRES 25 B 336 PRO GLN GLU THR LEU ALA GLY ILE THR VAL THR ASN PRO SEQRES 26 B 336 ALA ARG PHE LEU SER PRO THR LEU ARG ALA SER
MODRES 1P6C KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1P6C KCX B 169 LYS LYSINE NZ-CARBOXYLIC ACID
HET KCX A 169 12 HET KCX B 169 12 HET ZN A 401 1 HET ZN A 402 1 HET EBP A 5 16 HET DII A 7 11 HET ZN B 403 1 HET ZN B 404 1 HET EBP B 6 16 HET DII B 8 11
HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM EBP DIETHYL 4-METHYLBENZYLPHOSPHONATE HETNAM DII METHYLPHOSPHONIC ACID DIISOPROPYL ESTER
FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 EBP 2(C12 H19 O3 P) FORMUL 6 DII 2(C7 H17 O3 P) FORMUL 11 HOH *321(H2 O)
HELIX 1 1 SER A 47 ALA A 49 5 3 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 LEU A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 ALA A 203 GLN A 206 5 4 HELIX 11 11 ARG A 207 SER A 218 1 12 HELIX 12 12 SER A 222 SER A 224 5 3 HELIX 13 13 HIS A 230 THR A 234 5 5 HELIX 14 14 ASP A 236 ARG A 246 1 11 HELIX 15 15 ASN A 265 GLY A 273 1 9 HELIX 16 16 SER A 276 GLN A 290 1 15 HELIX 17 17 TYR A 292 LYS A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 GLU A 338 1 13 HELIX 21 21 PRO A 342 VAL A 351 1 10 HELIX 22 22 VAL A 351 SER A 359 1 9 HELIX 23 23 ILE B 46 GLY B 50 1 5 HELIX 24 24 GLY B 64 TRP B 69 1 6 HELIX 25 25 PRO B 70 GLY B 74 5 5 HELIX 26 26 SER B 75 ALA B 93 1 19 HELIX 27 27 THR B 103 GLY B 107 5 5 HELIX 28 28 ASP B 109 ASP B 121 1 13 HELIX 29 29 PRO B 135 LEU B 140 1 6 HELIX 30 30 SER B 142 TYR B 156 1 15 HELIX 31 31 THR B 177 GLY B 195 1 19 HELIX 32 32 ALA B 203 GLN B 206 5 4 HELIX 33 33 ARG B 207 GLU B 219 1 13 HELIX 34 34 SER B 222 SER B 224 5 3 HELIX 35 35 HIS B 230 THR B 234 5 5 HELIX 36 36 ASP B 236 GLY B 247 1 12 HELIX 37 37 ASN B 265 GLY B 273 1 9 HELIX 38 38 SER B 276 GLN B 290 1 15 HELIX 39 39 TYR B 292 LYS B 294 5 3 HELIX 40 40 ASN B 312 ASN B 321 1 10 HELIX 41 41 ASP B 323 MET B 325 5 3 HELIX 42 42 ALA B 326 LYS B 339 1 14 HELIX 43 43 PRO B 342 SER B 359 1 18
SHEET 1 A 2 ARG A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O THR A 97 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O VAL A 125 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 6 ALA A 127 GLY A 129 0 SHEET 2 D 6 ILE A 167 ALA A 171 1 SHEET 3 D 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 D 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 D 6 LEU A 249 LEU A 252 1 O GLY A 251 N ILE A 228 SHEET 6 D 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 E 2 ARG B 36 THR B 39 0 SHEET 2 E 2 GLY B 42 THR B 45 -1 O ILE B 44 N ILE B 37 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O VAL B 125 N ILE B 98 SHEET 1 G 6 ALA B 127 GLY B 129 0 SHEET 2 G 6 ILE B 167 ALA B 171 1 SHEET 3 G 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 G 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 G 6 LEU B 249 LEU B 252 1 O GLY B 251 N ILE B 228 SHEET 6 G 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252
LINK ZN ZN A 402 NE2 HIS A 230 1555 1555 1.98 LINK ZN ZN A 402 ND1 HIS A 201 1555 1555 2.13 LINK ZN ZN A 401 NE2 HIS A 57 1555 1555 1.97 LINK ZN ZN A 401 NE2 HIS A 55 1555 1555 1.99 LINK ZN ZN A 401 OD1 ASP A 301 1555 1555 2.36 LINK ZN ZN B 404 NE2 HIS B 230 1555 1555 2.06 LINK ZN ZN B 404 ND1 HIS B 201 1555 1555 1.98 LINK ZN ZN B 403 NE2 HIS B 57 1555 1555 2.16 LINK ZN ZN B 403 NE2 HIS B 55 1555 1555 2.07 LINK ZN ZN B 403 OD1 ASP B 301 1555 1555 2.21 LINK C ILE A 168 N KCX A 169 1555 1555 1.35 LINK C KCX A 169 N VAL A 170 1555 1555 1.34 LINK C ILE B 168 N KCX B 169 1555 1555 1.32 LINK C KCX B 169 N VAL B 170 1555 1555 1.35 LINK OQ1 KCX A 169 ZN ZN A 401 1555 1555 1.97 LINK OQ2 KCX A 169 ZN ZN A 402 1555 1555 1.84 LINK OQ1 KCX B 169 ZN ZN B 404 1555 1555 1.90 LINK OQ2 KCX B 169 ZN ZN B 403 1555 1555 1.92 LINK ZN ZN A 401 O HOH A 456 1555 1555 2.04 LINK ZN ZN A 402 O1 DII A 7 1555 1555 2.17 LINK ZN ZN A 402 O HOH A 456 1555 1555 2.05 LINK ZN ZN B 403 O HOH B 16 1555 1555 2.00 LINK ZN ZN B 404 O HOH B 16 1555 1555 2.13
SITE 1 AC1 7 DII A 7 HIS A 55 HIS A 57 KCX A 169 SITE 2 AC1 7 ASP A 301 ZN A 402 HOH A 456 SITE 1 AC2 6 DII A 7 KCX A 169 HIS A 201 HIS A 230 SITE 2 AC2 6 ZN A 401 HOH A 456 SITE 1 AC3 6 HOH B 16 HIS B 55 HIS B 57 KCX B 169 SITE 2 AC3 6 ASP B 301 ZN B 404 SITE 1 AC4 6 DII B 8 HOH B 16 KCX B 169 HIS B 201 SITE 2 AC4 6 HIS B 230 ZN B 403 SITE 1 AC5 3 GLN A 155 TYR A 156 PHE B 51 SITE 1 AC6 4 PHE A 51 GLU A 71 GLN B 155 TYR B 156 SITE 1 AC7 8 HIS A 57 TRP A 131 KCX A 169 HIS A 201 SITE 2 AC7 8 ASP A 301 ZN A 401 ZN A 402 HOH A 456 SITE 1 AC8 3 TRP B 131 HIS B 201 ZN B 404
CRYST1 130.400 91.900 69.700 90.00 90.90 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007669 0.000000 0.000120 0.00000
SCALE2 0.000000 0.010881 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014349 0.00000