10 20 30 40 50 60 70 80 1P5U - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE, STRUCTURAL PROTEIN 28-APR-03 1P5U
TITLE X-RAY STRUCTURE OF THE TERNARY CAF1M:CAF1:CAF1 TITLE 2 CHAPERONE:SUBUNIT:SUBUNIT COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN CAF1M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-258 OF SWS P26926; COMPND 5 SYNONYM: CAF1M CHAPERONE; CAF1M; CAPSULE PROTEIN FRACTION COMPND 6 1; F1 CHAPERONE PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: F1 CAPSULE ANTIGEN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 22-170 OF SWS P26948; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 OTHER_DETAILS: LARGER FRAGMENT OF F1 CAPSULE WITH A9R COMPND 15 MUTATION; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: F1 CAPSULE ANTIGEN; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: RESIDUES 35-170 OF SWS P26948; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: SMALLER HIS-TAGGED FRAGMENT OF F1 CAPSULE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 STRAIN: KIM5; SOURCE 5 GENE: CAF1M; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFM-1-6H; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 13 ORGANISM_TAXID: 632; SOURCE 14 STRAIN: KIM5; SOURCE 15 GENE: CAF1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFM-1-6H; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 23 ORGANISM_TAXID: 632; SOURCE 24 STRAIN: KIM5; SOURCE 25 GENE: CAF1; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_VARIANT: B834 (DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PFM-1-6H
KEYWDS CHAPERONE, CHAPERONE-TARGET COMPLEX, CHAPERONE-SUBUNIT KEYWDS 2 COMPLEX, PROTEIN FIBER, DONOR STRAND COMPLEMENTATION, DONOR KEYWDS 3 STRAND EXCHANGE, STRUCTURAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.V.ZAVIALOV,J.BERGLUND,A.F.PUDNEY,L.J.FOOKS,T.M.IBRAHIM, AUTHOR 2 S.MACINTYRE,S.D.KNIGHT
REVDAT 2 24-FEB-09 1P5U 1 VERSN REVDAT 1 24-JUN-03 1P5U 0
JRNL AUTH A.V.ZAVIALOV,J.BERGLUND,A.F.PUDNEY,L.J.FOOKS, JRNL AUTH 2 T.M.IBRAHIM,S.MACINTYRE,S.D.KNIGHT JRNL TITL STRUCTURE AND BIOGENESIS OF THE CAPSULAR F1 JRNL TITL 2 ANTIGEN FROM YERSINIA PESTIS. PRESERVED FOLDING JRNL TITL 3 ENERGY DRIVES FIBER FORMATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 113 587 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12787500 JRNL DOI 10.1016/S0092-8674(03)00351-9
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ZAVIALOV,J.BERGLUND,S.D.KNIGHT REMARK 1 TITL OVEREXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF THE F1 REMARK 1 TITL 3 ANTIGEN CAF1MCAF1 CHAPERONESUBUNIT PRE-ASSEMBLY REMARK 1 TITL 4 COMPLEX FROM YERSINIA PESTIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 359 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444902021054 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.V.ZAVIALOV,J.KERSLEY,T.KORPELA,V.P.ZAV'YALOV, REMARK 1 AUTH 2 S.MACINTYRE,S.D.KNIGHT REMARK 1 TITL DONOR STRAND COMPLEMENTATION MECHANISM IN THE REMARK 1 TITL 2 BIOGENESIS OF NON-PILUS SYSTEMS REMARK 1 REF MOL.MICROBIOL. V. 45 983 2002 REMARK 1 REFN ISSN 0950-382X REMARK 1 DOI 10.1046/J.1365-2958.2002.03066.X
REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 3 NUMBER OF REFLECTIONS : 32723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3767 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3380 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5134 ; 2.060 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7890 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 7.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4270 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 721 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3947 ; 0.266 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2439 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2448 ; 1.310 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3963 ; 2.264 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 3.522 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1171 ; 5.602 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 145 REMARK 3 RESIDUE RANGE : B 16 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4300 35.5320 6.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0033 REMARK 3 T33: 0.0514 T12: -0.0085 REMARK 3 T13: -0.0008 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.4024 L22: 1.1619 REMARK 3 L33: 0.6867 L12: -0.5106 REMARK 3 L13: 0.0889 L23: 0.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.0681 S13: -0.0238 REMARK 3 S21: 0.0888 S22: 0.0683 S23: -0.1423 REMARK 3 S31: 0.0493 S32: 0.0584 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8790 21.6330 0.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0252 REMARK 3 T33: 0.1001 T12: -0.0345 REMARK 3 T13: 0.0421 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.7380 L22: 2.5663 REMARK 3 L33: 3.5395 L12: 0.3968 REMARK 3 L13: -0.5740 L23: -0.3142 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: 0.0719 S13: -0.4068 REMARK 3 S21: -0.0222 S22: 0.0250 S23: 0.0455 REMARK 3 S31: 0.5184 S32: -0.1352 S33: 0.0983 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 15 REMARK 3 RESIDUE RANGE : C 16 C 149 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5380 49.7870 21.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.0594 T22: 0.0927 REMARK 3 T33: 0.0389 T12: 0.0333 REMARK 3 T13: -0.0187 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 3.1159 L22: 2.4401 REMARK 3 L33: 1.8289 L12: -1.1654 REMARK 3 L13: -0.7519 L23: 0.3831 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0613 S13: 0.2225 REMARK 3 S21: -0.0366 S22: 0.0198 S23: 0.1204 REMARK 3 S31: -0.3088 S32: -0.2071 S33: -0.0283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE
REMARK 4 REMARK 4 1P5U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019044.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 87.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: REFINED MODEL OF BINARY CAF1M:CAF1 PRE-ASSEMBLY REMARK 200 COMPLEX REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACETATE, REMARK 280 CACODYLATE, PH 5.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.40800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.40800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 PHE A 7 REMARK 465 ALA A 8 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 SER A 57 REMARK 465 GLU A 58 REMARK 465 ASP A 59 REMARK 465 GLU A 107 REMARK 465 ASP A 108 REMARK 465 ILE A 109 REMARK 465 TRP A 110 REMARK 465 VAL A 111 REMARK 465 ASP A 112 REMARK 465 ASP A 113 REMARK 465 ALA A 114 REMARK 465 THR A 115 REMARK 465 ASN A 116 REMARK 465 LYS A 117 REMARK 465 GLN A 118 REMARK 465 LYS A 119 REMARK 465 PHE A 120 REMARK 465 ASN A 121 REMARK 465 LEU A 235 REMARK 465 ALA C 3 REMARK 465 ASP C 4 REMARK 465 LEU C 5 REMARK 465 THR C 6 REMARK 465 SER C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 HIS C 11 REMARK 465 HIS C 12 REMARK 465 HIS C 13 REMARK 465 VAL C 14 REMARK 465 GLU C 15 REMARK 465 LEU C 107 REMARK 465 VAL C 108 REMARK 465 GLY C 109 REMARK 465 ASP C 110
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CB CG CD CE NZ REMARK 470 GLU A 54 CB CG CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 PHE A 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASP B 33 CB CG OD1 OD2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 110 CB CG OD1 OD2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 25 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 32 CB VAL A 32 CG1 -0.158 REMARK 500 ASN B 106 CB ASN B 106 CG -0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 MET C 70 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP C 111 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 -5.53 77.68 REMARK 500 ASN A 52 5.82 -66.98 REMARK 500 LYS A 53 14.17 80.68 REMARK 500 SER A 198 -159.98 -159.76 REMARK 500 ALA A 209 129.04 -35.57 REMARK 500 ARG A 212 -54.37 -126.99 REMARK 500 MET B 70 -4.35 82.94 REMARK 500 ILE B 126 -72.23 -107.17 REMARK 500 MET C 70 -15.72 87.98 REMARK 500 ILE C 126 -68.22 -107.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 105 ASP A 106 138.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P5V RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE BINARY CAF1M:CAF1 CHAPERONE:SUBUNIT REMARK 900 PREASSEMBLY COMPLEX
DBREF 1P5U A 1 235 UNP P26926 CAF1M_YERPE 24 258 DBREF 1P5U B 1 149 UNP P26948 CAF1_YERPE 22 170 DBREF 1P5U C 14 149 UNP P26948 CAF1_YERPE 35 170
SEQADV 1P5U ARG B 9 UNP P26948 ALA 30 ENGINEERED SEQADV 1P5U ALA C 3 UNP P26948 EXPRESSION TAG SEQADV 1P5U ASP C 4 UNP P26948 EXPRESSION TAG SEQADV 1P5U LEU C 5 UNP P26948 EXPRESSION TAG SEQADV 1P5U THR C 6 UNP P26948 EXPRESSION TAG SEQADV 1P5U SER C 7 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 8 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 9 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 10 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 11 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 12 UNP P26948 EXPRESSION TAG SEQADV 1P5U HIS C 13 UNP P26948 EXPRESSION TAG
SEQRES 1 A 235 ALA GLN PRO ASP ILE LYS PHE ALA SER LYS GLU TYR GLY SEQRES 2 A 235 VAL THR ILE GLY GLU SER ARG ILE ILE TYR PRO LEU ASP SEQRES 3 A 235 ALA ALA GLY VAL MET VAL SER VAL LYS ASN THR GLN ASP SEQRES 4 A 235 TYR PRO VAL LEU ILE GLN SER ARG ILE TYR ASP GLU ASN SEQRES 5 A 235 LYS GLU LYS GLU SER GLU ASP PRO PHE VAL VAL THR PRO SEQRES 6 A 235 PRO LEU PHE ARG LEU ASP ALA LYS GLN GLN ASN SER LEU SEQRES 7 A 235 ARG ILE ALA GLN ALA GLY GLY VAL PHE PRO ARG ASP LYS SEQRES 8 A 235 GLU SER LEU LYS TRP LEU CYS VAL LYS GLY ILE PRO PRO SEQRES 9 A 235 LYS ASP GLU ASP ILE TRP VAL ASP ASP ALA THR ASN LYS SEQRES 10 A 235 GLN LYS PHE ASN PRO ASP LYS ASP VAL GLY VAL PHE VAL SEQRES 11 A 235 GLN PHE ALA ILE ASN ASN CYS ILE LYS LEU LEU VAL ARG SEQRES 12 A 235 PRO ASN GLU LEU LYS GLY THR PRO ILE GLN PHE ALA GLU SEQRES 13 A 235 ASN LEU SER TRP LYS VAL ASP GLY GLY LYS LEU ILE ALA SEQRES 14 A 235 GLU ASN PRO SER PRO PHE TYR MET ASN ILE GLY GLU LEU SEQRES 15 A 235 THR PHE GLY GLY LYS SER ILE PRO SER HIS TYR ILE PRO SEQRES 16 A 235 PRO LYS SER THR TRP ALA PHE ASP LEU PRO LYS GLY LEU SEQRES 17 A 235 ALA GLY ALA ARG ASN VAL SER TRP ARG ILE ILE ASN ASP SEQRES 18 A 235 GLN GLY GLY LEU ASP ARG LEU TYR SER LYS ASN VAL THR SEQRES 19 A 235 LEU SEQRES 1 B 149 ALA ASP LEU THR ALA SER THR THR ARG THR ALA THR LEU SEQRES 2 B 149 VAL GLU PRO ALA ARG ILE THR LEU THR TYR LYS GLU GLY SEQRES 3 B 149 ALA PRO ILE THR ILE MET ASP ASN GLY ASN ILE ASP THR SEQRES 4 B 149 GLU LEU LEU VAL GLY THR LEU THR LEU GLY GLY TYR LYS SEQRES 5 B 149 THR GLY THR THR SER THR SER VAL ASN PHE THR ASP ALA SEQRES 6 B 149 ALA GLY ASP PRO MET TYR LEU THR PHE THR SER GLN ASP SEQRES 7 B 149 GLY ASN ASN HIS GLN PHE THR THR LYS VAL ILE GLY LYS SEQRES 8 B 149 ASP SER ARG ASP PHE ASP ILE SER PRO LYS VAL ASN GLY SEQRES 9 B 149 GLU ASN LEU VAL GLY ASP ASP VAL VAL LEU ALA THR GLY SEQRES 10 B 149 SER GLN ASP PHE PHE VAL ARG SER ILE GLY SER LYS GLY SEQRES 11 B 149 GLY LYS LEU ALA ALA GLY LYS TYR THR ASP ALA VAL THR SEQRES 12 B 149 VAL THR VAL SER ASN GLN SEQRES 1 C 147 ALA ASP LEU THR SER HIS HIS HIS HIS HIS HIS VAL GLU SEQRES 2 C 147 PRO ALA ARG ILE THR LEU THR TYR LYS GLU GLY ALA PRO SEQRES 3 C 147 ILE THR ILE MET ASP ASN GLY ASN ILE ASP THR GLU LEU SEQRES 4 C 147 LEU VAL GLY THR LEU THR LEU GLY GLY TYR LYS THR GLY SEQRES 5 C 147 THR THR SER THR SER VAL ASN PHE THR ASP ALA ALA GLY SEQRES 6 C 147 ASP PRO MET TYR LEU THR PHE THR SER GLN ASP GLY ASN SEQRES 7 C 147 ASN HIS GLN PHE THR THR LYS VAL ILE GLY LYS ASP SER SEQRES 8 C 147 ARG ASP PHE ASP ILE SER PRO LYS VAL ASN GLY GLU ASN SEQRES 9 C 147 LEU VAL GLY ASP ASP VAL VAL LEU ALA THR GLY SER GLN SEQRES 10 C 147 ASP PHE PHE VAL ARG SER ILE GLY SER LYS GLY GLY LYS SEQRES 11 C 147 LEU ALA ALA GLY LYS TYR THR ASP ALA VAL THR VAL THR SEQRES 12 C 147 VAL SER ASN GLN
FORMUL 4 HOH *290(H2 O)
HELIX 1 1 THR A 150 LEU A 158 5 9 HELIX 2 2 THR B 56 THR B 58 5 3 HELIX 3 3 THR C 56 THR C 58 5 3
SHEET 1 523 GLN A 75 GLN A 82 0 SHEET 2 523 GLY A 29 ASN A 36 -1 O VAL A 30 N ILE A 80 SHEET 3 523 LYS A 10 ILE A 16 -1 O THR A 15 N LYS A 35 SHEET 4 523 ALA B 17 GLU B 25 -1 O ALA B 17 N ILE A 16 SHEET 5 523 LEU B 42 GLY B 49 -1 O THR B 45 N LYS B 24 SHEET 6 523 SER B 118 GLY B 127 -1 O GLN B 119 N LEU B 48 SHEET 7 523 GLN B 83 LYS B 91 -1 O THR B 85 N ILE B 126 SHEET 8 523 ASP B 97 ILE B 98 -1 N ILE B 98 O GLY B 90 SHEET 9 523 GLN B 83 LYS B 91 -1 N GLY B 90 O ILE B 98 SHEET 10 523 LEU B 72 SER B 76 -1 N LEU B 72 O THR B 86 SHEET 11 523 GLY B 136 SER B 147 -1 O THR B 139 N THR B 75 SHEET 12 523 VAL B 60 ASP B 64 -1 O ASN B 61 N THR B 145 SHEET 13 523 LYS B 101 VAL B 102 1 N LYS B 101 O VAL B 60 SHEET 14 523 VAL B 60 ASP B 64 1 O VAL B 60 N LYS B 101 SHEET 15 523 GLY B 136 SER B 147 -1 N THR B 143 O THR B 63 SHEET 16 523 ASP A 125 ARG A 143 1 O ASP A 125 N GLY B 136 SHEET 17 523 ILE B 29 THR B 30 -1 O ILE B 29 N VAL A 126 SHEET 18 523 ASP A 125 ARG A 143 -1 N VAL A 126 O ILE B 29 SHEET 19 523 ARG A 20 PRO A 24 1 O ILE A 21 N LEU A 141 SHEET 20 523 ASP A 125 ARG A 143 1 O LYS A 139 N ILE A 21 SHEET 21 523 SER A 93 ILE A 102 -1 O SER A 93 N VAL A 142 SHEET 22 523 VAL A 42 ASP A 50 -1 O LEU A 43 N ILE A 102 SHEET 23 523 LEU A 67 LEU A 70 -1 O PHE A 68 N ILE A 44 SHEET 1 10 2 LYS A 166 ASN A 171 0 SHEET 2 10 2 SER A 198 ASP A 203 -1 O SER A 198 N ASN A 171 SHEET 1 14 5 MET A 177 PHE A 184 0 SHEET 2 14 5 LYS A 187 SER A 188 -1 O LYS A 187 N PHE A 184 SHEET 3 14 5 MET A 177 PHE A 184 -1 N PHE A 184 O LYS A 187 SHEET 4 14 5 ASN A 213 ILE A 218 -1 O SER A 215 N THR A 183 SHEET 5 14 5 TYR A 229 ASN A 232 -1 N TYR A 229 O TRP A 216 SHEET 1 2913 LEU C 42 GLY C 49 0 SHEET 2 2913 SER C 118 SER C 128 -1 O GLN C 119 N LEU C 48 SHEET 3 2913 GLN C 83 LYS C 91 -1 N THR C 85 O GLY C 127 SHEET 4 2913 ASP C 97 ILE C 98 -1 O ILE C 98 N GLY C 90 SHEET 5 2913 GLN C 83 LYS C 91 -1 N GLY C 90 O ILE C 98 SHEET 6 2913 LEU C 72 SER C 76 -1 O LEU C 72 N THR C 86 SHEET 7 2913 GLY C 136 VAL C 146 -1 N THR C 139 O THR C 75 SHEET 8 2913 LEU B 3 VAL B 14 -1 O LEU B 3 N VAL C 146 SHEET 9 2913 ILE C 29 THR C 30 1 N ILE C 29 O THR B 12 SHEET 10 2913 LEU B 3 VAL B 14 1 O THR B 12 N ILE C 29 SHEET 11 2913 GLY C 136 VAL C 146 -1 O GLY C 136 N LEU B 13 SHEET 12 2913 VAL C 60 THR C 63 -1 O ASN C 61 N THR C 145 SHEET 13 2913 LYS C 101 VAL C 102 1 N LYS C 101 O VAL C 60
SSBOND 1 CYS A 98 CYS A 137 1555 1555 2.32
CISPEP 1 THR A 64 PRO A 65 0 -3.08
CRYST1 178.816 69.620 45.271 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005592 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014364 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022089 0.00000