1P5N - Header Asymmetric Unit

HEADER RNA 27-APR-03 1P5N

TITLE SOLUTION STRUCTURE OF HCV IRES DOMAIN IIB

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 34-MER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HCV IRES DOMAIN IIA (RESIDUES 69-98); COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY IN VITRO TRANSCRIPTION FROM SOURCE 4 LINEARIZED PLASMID DNA USING T7 RNA POLYMERASE

KEYWDS RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME KEYWDS 2 ENTRY SITE, LOOP E MOTIF, HAIRPIN LOOP

EXPDTA SOLUTION NMR

NUMMDL 20

MDLTYP MINIMIZED AVERAGE

AUTHOR P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI

REVDAT 3 24-FEB-09 1P5N 1 VERSN REVDAT 2 30-MAR-04 1P5N 1 JRNL REVDAT 1 04-NOV-03 1P5N 0

JRNL AUTH P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI JRNL TITL STRUCTURE OF HCV IRES DOMAIN II DETERMINED BY NMR. JRNL REF NAT.STRUCT.BIOL. V. 10 1033 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14578934 JRNL DOI 10.1038/NSB1004

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, CNS 1.1, PALES 1 REMARK 3 AUTHORS : BRUNGER, A.T. (X-PLOR), BRUNGER, A.T. (CNS), REMARK 3 ZWECKSTETTER, M. & BAX, A. (PALES) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE REFERENCE ABOVE

REMARK 4 REMARK 4 1P5N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB019037.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 298; 303 REMARK 210 PH : 6.40; 6.40; 6.40 REMARK 210 IONIC STRENGTH : 10MM POSPHATE BUFFER; 10MM REMARK 210 POSPHATE BUFFER; 10MM POSPHATE REMARK 210 BUFFER REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM HCV IRES DOMAIN IIB RNA REMARK 210 10MM PHOSPHATE BUFFER; 1-2MM REMARK 210 HCV IRES DOMAIN IIB RNA 10MM REMARK 210 PHOSPHATE BUFFER; 1-2MM HCV REMARK 210 IRES DOMAIN IIB RNA U-15N,13C REMARK 210 10MM PHOSPHATE BUFFER; 1-2MM REMARK 210 HCV IRES DOMAIN IIB RNA U-15N, REMARK 210 13C 10MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D S-NOESY, 2D NOESY, DQF- REMARK 210 COSY, 2D HP-COSY, 3D_13C- REMARK 210 SEPARATED_NOESY, 3D HCP, 3D REMARK 210 HMQC TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3 REMARK 210 METHOD USED : SEE REFERENCE ABOVE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT VIOLATION REMARK 210 AND TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS SOLVED USING TRIPLE RESONANCE, REMARK 210 MULTIDIMENSIONAL NMR SPECTROSCOPY AND TROSY-TYPE EXPERIMENTS REMARK 210 TO MEASURE RESIDUAL DIPOLAR COUPLINGS

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1P5N A 1 34 PDB 1P5N 1P5N 1 34

SEQRES 1 A 34 G G C A G A A A G C G U C SEQRES 2 A 34 U A G C C A U G G C G U U SEQRES 3 A 34 A G U A U G C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000