10 20 30 40 50 60 70 80 1P0U - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 11-APR-03 1P0U
TITLE SHEARED G/C BASE PAIR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*AP*TP*CP*GP*AP*CP*GP*AP*TP*GP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS SHEARED GC BASE PAIR, NMR, SINGLE-RESIDUE LOOP, SYN KEYWDS 2 CYTIDINE, DNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR K.H.CHIN,S.H.CHOU
REVDAT 2 24-FEB-09 1P0U 1 VERSN REVDAT 1 03-JUN-03 1P0U 0
JRNL AUTH K.H.CHIN,S.H.CHOU JRNL TITL SHEARED-TYPE G(ANTI).C(SYN) BASE-PAIR: A UNIQUE JRNL TITL 2 D(GXC) LOOP CLOSURE MOTIF. JRNL REF J.MOL.BIOL. V. 329 351 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12758081 JRNL DOI 10.1016/S0022-2836(03)00440-6
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1P0U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018877.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM NACL, 10MM PHOSPHATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, P-COSY, REMARK 210 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, DGII REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC A 5 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 8 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DG A 9 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 13 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DT A 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DC A 5 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG A 9 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DA A 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG A 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DC A 13 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 3 DC A 5 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 3 DC A 8 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 DG A 9 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 DA A 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 3 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 4 DG A 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 4 DC A 5 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 4 DG A 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 4 DA A 7 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 4 DC A 8 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 4 DC A 8 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 DG A 9 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 DA A 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 4 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 5 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 DA A 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 5 DC A 5 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 DG A 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 5 DC A 8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 5 DC A 8 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 DG A 9 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 5 DA A 10 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 5 DG A 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 5 DC A 13 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 6 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 101 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC A 5 0.06 SIDE_CHAIN REMARK 500 1 DG A 9 0.10 SIDE_CHAIN REMARK 500 1 DA A 10 0.06 SIDE_CHAIN REMARK 500 2 DG A 9 0.09 SIDE_CHAIN REMARK 500 3 DC A 8 0.08 SIDE_CHAIN REMARK 500 3 DG A 9 0.10 SIDE_CHAIN REMARK 500 3 DG A 12 0.08 SIDE_CHAIN REMARK 500 3 DC A 13 0.08 SIDE_CHAIN REMARK 500 4 DA A 3 0.07 SIDE_CHAIN REMARK 500 4 DC A 8 0.07 SIDE_CHAIN REMARK 500 4 DG A 9 0.12 SIDE_CHAIN REMARK 500 4 DG A 12 0.07 SIDE_CHAIN REMARK 500 4 DC A 13 0.08 SIDE_CHAIN REMARK 500 5 DC A 8 0.08 SIDE_CHAIN REMARK 500 5 DG A 9 0.11 SIDE_CHAIN REMARK 500 6 DC A 8 0.07 SIDE_CHAIN REMARK 500 6 DG A 9 0.11 SIDE_CHAIN REMARK 500 7 DC A 8 0.07 SIDE_CHAIN REMARK 500 7 DG A 9 0.09 SIDE_CHAIN REMARK 500 8 DC A 8 0.07 SIDE_CHAIN REMARK 500 8 DG A 9 0.09 SIDE_CHAIN REMARK 500 8 DG A 12 0.07 SIDE_CHAIN REMARK 500 9 DA A 3 0.06 SIDE_CHAIN REMARK 500 9 DG A 9 0.09 SIDE_CHAIN REMARK 500 9 DG A 12 0.07 SIDE_CHAIN REMARK 500 10 DC A 8 0.07 SIDE_CHAIN REMARK 500 10 DG A 9 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1P0U A 1 13 PDB 1P0U 1P0U 1 13
SEQRES 1 A 13 DG DC DA DT DC DG DA DC DG DA DT DG DC
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000