10 20 30 40 50 60 70 80 1OZX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CONTRACTILE PROTEIN 09-APR-03 1OZX
TITLE MODEL OF THE MICROTUBULE MOTOR, NCD, WITH SWITCH 1 CLOSED TITLE 2 AND WITH ADP BOUND AT THE NUCLEOTIDE SITE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLARET SEGREGATIONAL PROTEIN (NCD); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY
KEYWDS NCD, MICROTUBULE MOTORS, SWITCH 1, MOLECULAR MODELING, EPR, KEYWDS 2 ELECTRON PARAMAGNETIC RESONANCE SPECTROSCOPY, SPIN PROBES
EXPDTA THEORETICAL MODEL
AUTHOR N.NABER,T.J.MINEHARDT,S.RICE,X.CHEN,J.GRAMMER,M.MATUSKA, AUTHOR 2 R.D.VALE,P.A.KOLLMAN,R.CAR,R.G.YOUNT,R.COOKE,E.PATE
REVDAT 1 13-APR-04 1OZX 0
JRNL AUTH N.NABER,T.J.MINEHARDT,S.RICE,X.CHEN,J.GRAMMER, JRNL AUTH 2 M.MATUSKA,R.D.VALE,P.A.KOLLMAN,R.CAR,R.G.YOUNT, JRNL AUTH 3 R.COOKE,E.PATE JRNL TITL CLOSING OF THE NUCLEOTIDE POCKET OF KINESIN-FAMILY JRNL TITL 2 MOTORS UPON BINDING TO MICROTUBULES JRNL REF SCIENCE V. 300 798 2003 JRNL REFN ASTM SCIEAS US ISSN 0036-8075
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.J.MINEHARDT,R.COOKE,E.PATE,P.A.KOLLMAN REMARK 1 TITL MOLECULAR DYNAMICS STUDY OF THE ENERGETIC, REMARK 1 TITL 2 MECHANISTIC, AND STRUCTURAL IMPLICATIONS OF A REMARK 1 TITL 3 CLOSED PHOSPHATE TUBE IN NCD REMARK 1 REF BIOPHYS.J. V. 80 1151 2001 REMARK 1 REFN ASTM BIOJAU US ISSN 0006-3495
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1OZX COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-2003. REMARK 100 THE RCSB ID CODE IS RCSB018853.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE ORIGINAL MODELED NCD*ADP STRUCTURE WITH SWITCH 1 REMARK 220 CLOSED (ADJACENT TO THE DIPHOSPHATE MOIETY, HOMOLOGOUS REMARK 220 TO SWITCH 1 IN THE ORIGINAL MYOSIN STRUCTURES) IS REMARK 220 DESCRIBED IN MINEHARDT ET AL, BIOPHYS. J. 2001. V. 80, REMARK 220 PP. 1151-1168. THAT STRUCTURE WAS ENERGY MINIMIZED IN A REMARK 220 FULL BOX OF TIP3P WATERS USING THE AMBER 7 SUITE OF REMARK 220 CODES AND IS THE STRUCTURE HERE. THE STRUCTURE WAS USED REMARK 220 AS A TEMPLATE FOR DOCKING ELECTRON PARAMAGNETIC REMARK 220 RESONANCE (EPR) SPIN PROBES AT THE NUCLEOTIDE SITE OF REMARK 220 THE CLOSED SWITCH 1 NCD STRUCTURE (DOCKED EPR PROBES: REMARK 220 SSL- NANDP, PDB ID 1SJY; SL-NANDP, PDB ID 1SYP; 2'- REMARK 220 SLADP, PDB ID 1SZ4; 3'-SLADP, PDB ID 1SZ5).
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 MG MG 669 O2B ADP A 668 1.83 REMARK 500 OD1 ASP A 580 MG MG 669 1.88 REMARK 500 OD2 ASP A 580 MG MG 669 1.94 REMARK 500 MG MG 669 O HOH 959 1.98 REMARK 500 OG SER A 551 MG MG 669 2.00 REMARK 500 OG1 THR A 441 MG MG 669 2.04 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 509 -15.84 112.55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 383 ASP A 384 -148.34 REMARK 500 LYS A 509 ASN A 510 124.64 REMARK 500 THR A 521 VAL A 522 -148.14 REMARK 500 PRO A 649 PHE A 650 -149.32
DBREF 1OZX A 345 667 UNP P20480 NCD_DROME 345 667
SEQRES 1 A 323 LEU ARG GLY ASN ILE ARG VAL PHE CYS ARG ILE ARG PRO SEQRES 2 A 323 PRO LEU GLU SER GLU GLU ASN ARG MET CYS CYS THR TRP SEQRES 3 A 323 THR TYR HIS ASP GLU SER THR VAL GLU LEU GLN SER ILE SEQRES 4 A 323 ASP ALA GLN ALA LYS SER LYS MET GLY GLN GLN ILE PHE SEQRES 5 A 323 SER PHE ASP GLN VAL PHE HIS PRO LEU SER SER GLN SER SEQRES 6 A 323 ASP ILE PHE GLU MET VAL SER PRO LEU ILE GLN SER ALA SEQRES 7 A 323 LEU ASP GLY TYR ASN ILE CYS ILE PHE ALA TYR GLY GLN SEQRES 8 A 323 THR GLY SER GLY LYS THR TYR THR MET ASP GLY VAL PRO SEQRES 9 A 323 GLU SER VAL GLY VAL ILE PRO ARG THR VAL ASP LEU LEU SEQRES 10 A 323 PHE ASP SER ILE ARG GLY TYR ARG ASN LEU GLY TRP GLU SEQRES 11 A 323 TYR GLU ILE LYS ALA THR PHE LEU GLU ILE TYR ASN GLU SEQRES 12 A 323 VAL LEU TYR ASP LEU LEU SER ASN GLU GLN LYS ASP MET SEQRES 13 A 323 GLU ILE ARG MET ALA LYS ASN ASN LYS ASN ASP ILE TYR SEQRES 14 A 323 VAL SER ASN ILE THR GLU GLU THR VAL LEU ASP PRO ASN SEQRES 15 A 323 HIS LEU ARG HIS LEU MET HIS THR ALA LYS MET ASN ARG SEQRES 16 A 323 ALA THR ALA SER THR ALA GLY ASN GLU ARG SER SER ARG SEQRES 17 A 323 SER HIS ALA VAL THR LYS LEU GLU LEU ILE GLY ARG HIS SEQRES 18 A 323 ALA GLU LYS GLN GLU ILE SER VAL GLY SER ILE ASN LEU SEQRES 19 A 323 VAL ASP LEU ALA GLY SER GLU SER PRO LYS THR SER THR SEQRES 20 A 323 ARG MET THR GLU THR LYS ASN ILE ASN ARG SER LEU SER SEQRES 21 A 323 GLU LEU THR ASN VAL ILE LEU ALA LEU LEU GLN LYS GLN SEQRES 22 A 323 ASP HIS ILE PRO TYR ARG ASN SER LYS LEU THR HIS LEU SEQRES 23 A 323 LEU MET PRO SER LEU GLY GLY ASN SER LYS THR LEU MET SEQRES 24 A 323 PHE ILE ASN VAL SER PRO PHE GLN ASP CYS PHE GLN GLU SEQRES 25 A 323 SER VAL LYS SER LEU ARG PHE ALA ALA SER VAL
HET MG 669 1 HET NA 670 1 HET NA 671 1 HET NA 672 1 HET NA 673 1 HET NA 674 1 HET ADP A 668 39
HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
FORMUL 2 MG MG 2+ FORMUL 3 NA 5(NA 1+) FORMUL 8 ADP C10 H15 N5 O10 P2 FORMUL 9 HOH *1232(H2 O1)
HELIX 1 1 SER A 409 MET A 414 1 6 HELIX 2 2 VAL A 415 ASP A 424 1 10 HELIX 3 3 GLY A 452 ASN A 470 1 19 HELIX 4 4 ASP A 524 ASN A 538 1 15 HELIX 5 5 ASN A 600 LYS A 616 1 17 HELIX 6 6 LYS A 626 MET A 632 1 7 HELIX 7 7 PRO A 633 LEU A 635 5 3 HELIX 8 8 CYS A 653 LEU A 661 1 9
SHEET 1 A 7 ILE A 349 ILE A 355 0 SHEET 2 A 7 THR A 641 VAL A 647 1 O ILE A 645 N PHE A 352 SHEET 3 A 7 ASN A 427 TYR A 433 1 N TYR A 433 O ASN A 646 SHEET 4 A 7 ILE A 571 ASP A 580 1 O ASN A 577 N ILE A 428 SHEET 5 A 7 HIS A 554 ARG A 564 -1 N LEU A 561 O GLY A 574 SHEET 6 A 7 LYS A 478 ILE A 484 -1 N ILE A 484 O HIS A 554 SHEET 7 A 7 LEU A 489 ASP A 491 -1 O TYR A 490 N GLU A 483 SHEET 1 B 4 GLU A 474 TYR A 475 0 SHEET 2 B 4 HIS A 554 ARG A 564 -1 O ARG A 564 N GLU A 474 SHEET 3 B 4 LYS A 478 ILE A 484 -1 N ILE A 484 O HIS A 554 SHEET 4 B 4 GLU A 520 THR A 521 -1 O GLU A 520 N ALA A 479 SHEET 1 C 3 THR A 369 ASP A 374 0 SHEET 2 C 3 THR A 377 GLN A 381 -1 O THR A 377 N HIS A 373 SHEET 3 C 3 PHE A 396 SER A 397 -1 O PHE A 396 N VAL A 378 SHEET 1 D 2 ILE A 502 MET A 504 0 SHEET 2 D 2 ILE A 512 VAL A 514 -1 O TYR A 513 N ARG A 503 SHEET 1 E 2 THR A 589 ARG A 592 0 SHEET 2 E 2 GLU A 595 ASN A 598 -1 O LYS A 597 N SER A 590
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000