10 20 30 40 50 60 70 80 1OXP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER AMINOTRANSFERASE 23-DEC-95 1OXP
TITLE ASPARTATE AMINOTRANSFERASE, H-ASP COMPLEX, CLOSED CONFORMATION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: HEART; SOURCE 6 ORGANELLE: MITOCHONDRIA; SOURCE 7 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 32644
KEYWDS VITAMIN B6, HYDROXYLAMINE DERIVED INHIBITORS, AMINOTRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.HOHENESTER,T.SCHIRMER,J.N.JANSONIUS
REVDAT 5 13-JUL-11 1OXP 1 VERSN REVDAT 4 24-FEB-09 1OXP 1 VERSN REVDAT 3 01-APR-03 1OXP 1 JRNL REVDAT 2 22-DEC-99 1OXP 1 JRNL REVDAT 1 10-JUN-96 1OXP 0
JRNL AUTH Z.MARKOVIC-HOUSLEY,T.SCHIRMER,E.HOHENESTER,A.R.KHOMUTOV, JRNL AUTH 2 R.M.KHOMUTOV,M.Y.KARPEISKY,E.SANDMEIER,P.CHRISTEN, JRNL AUTH 3 J.N.JANSONIUS JRNL TITL CRYSTAL STRUCTURES AND SOLUTION STUDIES OF OXIME ADDUCTS OF JRNL TITL 2 MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE. JRNL REF EUR.J.BIOCHEM. V. 236 1025 1996 JRNL REFN ISSN 0014-2956 JRNL PMID 8665890 JRNL DOI 10.1111/J.1432-1033.1996.01025.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.N.JANSONIUS,G.EICHELE,G.C.FORD,D.PICOT,C.THALLER, REMARK 1 AUTH 2 M.G.VINCENT REMARK 1 TITL SPATIAL STRUCTURE OF MITOCHONDRIAL ASPARTATE REMARK 1 TITL 2 AMINOTRANSFERASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1870 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.056 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1OXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-90 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11781 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.18000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.77500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.77500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.50000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.18000
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 96 CB CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 518 O HOH A 587 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 413 O HOH A 413 3655 2.08 REMARK 500 OH TYR A 70 O1P IK2 A 411 3655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 96 CA LYS A 96 CB -0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 OD1 - CG - OD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 GLU A 22 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 GLU A 22 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 27 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 27 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 41 NH1 - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 47 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU A 50 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 GLU A 57 OE1 - CD - OE2 ANGL. DEV. = 7.9 DEGREES REMARK 500 LYS A 68 CD - CE - NZ ANGL. DEV. = 23.0 DEGREES REMARK 500 TYR A 70 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 LEU A 71 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP A 78 OD1 - CG - OD2 ANGL. DEV. = 12.6 DEGREES REMARK 500 ASP A 78 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 THR A 80 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 81 CG - CD - NE ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 99 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 100 CB - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR A 100 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 113 NH1 - CZ - NH2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 121 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 129 CD - NE - CZ ANGL. DEV. = 17.5 DEGREES REMARK 500 HIS A 143 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 148 CD - NE - CZ ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLY A 151 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG A 159 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 160 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR A 161 CA - CB - CG ANGL. DEV. = 11.8 DEGREES REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 PRO A 195 N - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 THR A 196 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP A 205 N - CA - CB ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 215 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 222 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 235 CD - NE - CZ ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 90 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 -63.59 -98.85 REMARK 500 ASP A 43 27.31 -77.86 REMARK 500 SER A 92 143.19 -29.07 REMARK 500 ARG A 99 34.42 -90.22 REMARK 500 SER A 107 -169.68 66.44 REMARK 500 TYR A 160 -69.04 -125.48 REMARK 500 GLN A 202 -47.68 -24.08 REMARK 500 TYR A 263 -74.94 -22.79 REMARK 500 ARG A 266 93.44 56.95 REMARK 500 MET A 294 -64.98 -101.98 REMARK 500 TYR A 295 17.97 -152.20 REMARK 500 SER A 296 -52.18 55.48 REMARK 500 PRO A 313 -61.36 -26.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 15 25.0 L L OUTSIDE RANGE REMARK 500 LYS A 124 24.6 L L OUTSIDE RANGE REMARK 500 PHE A 147 24.6 L L OUTSIDE RANGE REMARK 500 TRP A 238 24.9 L L OUTSIDE RANGE REMARK 500 SER A 346 25.0 L L OUTSIDE RANGE REMARK 500 THR A 363 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 498 DISTANCE = 5.28 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IK2 A 411
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES IN EACH SUBUNIT ARE NUMBERED FROM 3 TO 410, REMARK 999 ACCORDING TO A SEQUENCE ALIGNMENT WITH THE LONGER SEQUENCE REMARK 999 OF PIG CYTOSOLIC ASPARTATE AMINOTRANSFERASE REMARK 999 (SEE U. GRAF-HAUSNER, K.J. WILSON AND P. CHRISTEN (1983) REMARK 999 J.BIOL.CHEM. 258, 8813-8826).
DBREF 1OXP A 3 410 UNP P00508 AATM_CHICK 23 423
SEQADV 1OXP PRO A 47 UNP P00508 SER 67 CONFLICT
SEQRES 1 A 401 SER SER TRP TRP SER HIS VAL GLU MET GLY PRO PRO ASP SEQRES 2 A 401 PRO ILE LEU GLY VAL THR GLU ALA PHE LYS ARG ASP THR SEQRES 3 A 401 ASN SER LYS LYS MET ASN LEU GLY VAL GLY ALA TYR ARG SEQRES 4 A 401 ASP ASP ASN GLY LYS PRO TYR VAL LEU ASN CYS VAL ARG SEQRES 5 A 401 LYS ALA GLU ALA MET ILE ALA ALA LYS LYS MET ASP LYS SEQRES 6 A 401 GLU TYR LEU PRO ILE ALA GLY LEU ALA ASP PHE THR ARG SEQRES 7 A 401 ALA SER ALA GLU LEU ALA LEU GLY GLU ASN SER GLU ALA SEQRES 8 A 401 PHE LYS SER GLY ARG TYR VAL THR VAL GLN GLY ILE SER SEQRES 9 A 401 GLY THR GLY SER LEU ARG VAL GLY ALA ASN PHE LEU GLN SEQRES 10 A 401 ARG PHE PHE LYS PHE SER ARG ASP VAL TYR LEU PRO LYS SEQRES 11 A 401 PRO SER TRP GLY ASN HIS THR PRO ILE PHE ARG ASP ALA SEQRES 12 A 401 GLY LEU GLN LEU GLN ALA TYR ARG TYR TYR ASP PRO LYS SEQRES 13 A 401 THR CYS SER LEU ASP PHE THR GLY ALA MET GLU ASP ILE SEQRES 14 A 401 SER LYS ILE PRO GLU LYS SER ILE ILE LEU LEU HIS ALA SEQRES 15 A 401 CYS ALA HIS ASN PRO THR GLY VAL ASP PRO ARG GLN GLU SEQRES 16 A 401 GLN TRP LYS GLU LEU ALA SER VAL VAL LYS LYS ARG ASN SEQRES 17 A 401 LEU LEU ALA TYR PHE ASP MET ALA TYR GLN GLY PHE ALA SEQRES 18 A 401 SER GLY ASP ILE ASN ARG ASP ALA TRP ALA LEU ARG HIS SEQRES 19 A 401 PHE ILE GLU GLN GLY ILE ASP VAL VAL LEU SER GLN SER SEQRES 20 A 401 TYR ALA LYS ASN MET GLY LEU TYR GLY GLU ARG ALA GLY SEQRES 21 A 401 ALA PHE THR VAL ILE CYS ARG ASP ALA GLU GLU ALA LYS SEQRES 22 A 401 ARG VAL GLU SER GLN LEU LYS ILE LEU ILE ARG PRO MET SEQRES 23 A 401 TYR SER ASN PRO PRO MET ASN GLY ALA ARG ILE ALA SER SEQRES 24 A 401 LEU ILE LEU ASN THR PRO GLU LEU ARG LYS GLU TRP LEU SEQRES 25 A 401 VAL GLU VAL LYS GLY MET ALA ASP ARG ILE ILE SER MET SEQRES 26 A 401 ARG THR GLN LEU VAL SER ASN LEU LYS LYS GLU GLY SER SEQRES 27 A 401 SER HIS ASN TRP GLN HIS ILE THR ASP GLN ILE GLY MET SEQRES 28 A 401 PHE CYS PHE THR GLY LEU LYS PRO GLU GLN VAL GLU ARG SEQRES 29 A 401 LEU THR LYS GLU PHE SER ILE TYR MET THR LYS ASP GLY SEQRES 30 A 401 ARG ILE SER VAL ALA GLY VAL ALA SER SER ASN VAL GLY SEQRES 31 A 401 TYR LEU ALA HIS ALA ILE HIS GLN VAL THR LYS
HET IK2 A 411 21
HETNAM IK2 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE
FORMUL 2 IK2 C10 H15 N2 O8 P FORMUL 3 HOH *215(H2 O)
HELIX 1 1 LEU A 18 LYS A 25 5 8 HELIX 2 2 ASN A 51 LYS A 63 1 13 HELIX 3 3 ALA A 77 LEU A 88 1 12 HELIX 4 4 GLU A 93 SER A 97 1 5 HELIX 5 5 SER A 107 PHE A 122 1 16 HELIX 6 6 GLY A 141 ALA A 150 5 10 HELIX 7 7 PHE A 170 LYS A 179 1 10 HELIX 8 8 GLN A 202 ARG A 215 1 14 HELIX 9 9 ILE A 233 ASP A 236 1 4 HELIX 10 10 TRP A 238 GLN A 246 1 9 HELIX 11 11 ALA A 277 TYR A 295 1 19 HELIX 12 12 MET A 300 LEU A 310 1 11 HELIX 13 13 PRO A 313 GLU A 344 1 32 HELIX 14 14 GLN A 351 ASP A 355 5 5 HELIX 15 15 PRO A 367 GLU A 376 1 10 HELIX 16 16 VAL A 389 GLY A 391 5 3 HELIX 17 17 VAL A 397 GLN A 406 1 10
SHEET 1 A 5 TYR A 100 GLY A 105 0 SHEET 2 A 5 GLY A 268 ILE A 273 -1 N VAL A 272 O VAL A 101 SHEET 3 A 5 VAL A 251 SER A 255 -1 N GLN A 254 O ALA A 269 SHEET 4 A 5 LEU A 218 MET A 223 1 N PHE A 221 O VAL A 251 SHEET 5 A 5 ILE A 185 HIS A 189 1 N ILE A 186 O LEU A 218 SHEET 1 B 2 ASP A 130 LYS A 137 0 SHEET 2 B 2 GLN A 154 ARG A 159 1 N GLN A 154 O VAL A 133 SHEET 1 C 2 PHE A 360 PHE A 362 0 SHEET 2 C 2 ARG A 386 SER A 388 -1 N ILE A 387 O CYS A 361
CISPEP 1 LYS A 137 PRO A 138 0 1.44 CISPEP 2 ASN A 194 PRO A 195 0 4.00
SITE 1 AC1 16 ILE A 17 TYR A 70 SER A 107 GLY A 108 SITE 2 AC1 16 THR A 109 TRP A 140 ASN A 194 ASP A 222 SITE 3 AC1 16 TYR A 225 SER A 255 ALA A 257 LYS A 258 SITE 4 AC1 16 ARG A 266 ARG A 292 HOH A 461 HOH A 625
CRYST1 69.500 91.550 128.360 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014388 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010923 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007791 0.00000