10 20 30 40 50 60 70 80 1OXC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 02-APR-03 1OXC
TITLE LECB (PA-LII) IN COMPLEX WITH FUCOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN LECB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LECB; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22A
KEYWDS LECTIN, CARBOHYDRATE, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR R.LORIS,D.TIELKER,K.-E.JAEGER,L.WYNS
REVDAT 2 24-FEB-09 1OXC 1 VERSN REVDAT 1 09-SEP-03 1OXC 0
JRNL AUTH R.LORIS,D.TIELKER,K.-E.JAEGER,L.WYNS JRNL TITL STRUCTURAL BASIS OF CARBOHYDRATE RECOGNITION BY JRNL TITL 2 THE LECTIN LECB FROM PSEUDOMONAS AERUGINOSA JRNL REF J.MOL.BIOL. V. 331 861 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12909014 JRNL DOI 10.1016/S0022-2836(03)00754-X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 108658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 8718 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 656 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1OXC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018768.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 22.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, AMMONIUM SULPHATE, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.54400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.94450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.52900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.94450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.54400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.52900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 72 CD NE CZ NH1 NH2 REMARK 470 ARG B 72 CD NE CZ NH1 NH2 REMARK 470 ASN C 29 OD1 ND2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 ASN C 70 CG OD1 ND2 REMARK 470 ARG C 72 CD NE CZ NH1 NH2 REMARK 470 ASN D 33 CG OD1 ND2 REMARK 470 ARG D 72 CD NE CZ NH1 NH2 REMARK 470 GLU D 86 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -31.06 -154.69 REMARK 500 GLU B 86 -35.88 -151.03 REMARK 500 GLU C 86 -41.76 -138.44 REMARK 500 SER D 44 148.31 -170.90 REMARK 500 GLU D 86 -32.48 -146.92 REMARK 500 TYR D 102 29.57 48.78 REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 IN CHAINS A AND D, FUL 115 AND FUC 1115 ARE IN ALTERNATE REMARK 600 CONFORMATIONS OF EACH OTHER.
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD2 153.6 REMARK 620 3 ASN A 103 OD1 87.7 73.6 REMARK 620 4 ASP A 104 OD1 82.2 115.0 88.6 REMARK 620 5 GLY B 114 O 79.5 80.5 85.2 160.9 REMARK 620 6 FUL A 115 O3 133.6 71.5 133.8 79.8 117.2 REMARK 620 7 FUL A 115 O4 76.9 116.0 160.0 101.6 79.6 65.6 REMARK 620 8 FUC A1115 O3 133.6 71.5 133.8 79.8 117.2 0.0 65.6 REMARK 620 9 FUC A1115 O4 76.9 116.0 160.0 101.6 79.6 65.6 0.0 65.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.4 REMARK 620 3 ASP A 99 OD1 85.6 79.2 REMARK 620 4 ASP A 101 OD1 76.3 128.6 87.5 REMARK 620 5 ASP A 104 OD1 118.9 129.3 149.5 81.6 REMARK 620 6 ASP A 104 OD2 82.8 79.0 158.1 107.6 51.3 REMARK 620 7 FUL A 115 O2 140.9 87.8 91.9 142.6 80.2 85.6 REMARK 620 8 FUL A 115 O3 145.8 142.8 73.9 75.8 75.8 124.5 68.2 REMARK 620 9 FUC A1115 O2 140.9 87.8 91.9 142.6 80.2 85.6 0.0 68.2 REMARK 620 10 FUC A1115 O3 145.8 142.8 73.9 75.8 75.8 124.5 68.2 REMARK 620 0.0 68.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 9 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 79.4 REMARK 620 3 ASP B 101 OD2 80.9 153.5 REMARK 620 4 ASN B 103 OD1 86.6 86.6 74.6 REMARK 620 5 ASP B 104 OD1 160.0 81.1 115.7 87.4 REMARK 620 6 FUC B 115 O3 117.8 135.4 70.3 132.2 79.9 REMARK 620 7 FUC B 115 O4 79.3 79.4 114.2 161.7 101.9 65.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 54.0 REMARK 620 3 ASP B 99 OD1 86.7 81.1 REMARK 620 4 ASP B 101 OD1 76.8 130.2 89.2 REMARK 620 5 ASP B 104 OD1 119.3 127.4 148.6 81.0 REMARK 620 6 ASP B 104 OD2 83.8 77.7 158.5 107.3 50.8 REMARK 620 7 FUC B 115 O2 142.1 88.3 91.0 141.0 78.7 84.7 REMARK 620 8 FUC B 115 O3 145.0 144.7 73.5 74.4 75.2 123.6 68.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD2 155.6 REMARK 620 3 ASN C 103 OD1 86.3 75.9 REMARK 620 4 ASP C 104 OD1 80.0 115.2 87.8 REMARK 620 5 GLY D 114 O 80.3 81.9 85.9 159.7 REMARK 620 6 FUC C 115 O3 132.7 70.9 134.8 79.7 118.0 REMARK 620 7 FUC C 115 O4 77.5 114.9 159.0 102.2 78.4 65.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.5 REMARK 620 3 ASP C 99 OD1 83.8 80.7 REMARK 620 4 ASP C 101 OD1 77.0 129.6 85.7 REMARK 620 5 ASP C 104 OD1 119.8 129.6 148.3 80.3 REMARK 620 6 ASP C 104 OD2 84.7 79.6 160.3 107.1 50.9 REMARK 620 7 FUC C 115 O2 140.5 87.4 96.2 142.5 78.8 82.8 REMARK 620 8 FUC C 115 O3 146.7 142.1 74.2 76.7 75.0 122.7 68.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 79.9 REMARK 620 3 ASP D 101 OD1 81.8 154.2 REMARK 620 4 ASN D 103 OD1 85.0 87.6 72.9 REMARK 620 5 ASP D 104 OD1 161.2 82.0 113.5 89.1 REMARK 620 6 FUL D 115 O3 117.2 136.1 69.0 131.4 79.8 REMARK 620 7 FUL D 115 O4 80.0 79.7 114.6 161.9 101.8 65.6 REMARK 620 8 FUC D1115 O3 117.2 136.1 69.0 131.4 79.8 0.0 65.6 REMARK 620 9 FUC D1115 O4 80.0 79.7 114.6 161.9 101.8 65.6 0.0 65.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 52.9 REMARK 620 3 ASP D 99 OD1 86.2 83.2 REMARK 620 4 ASP D 101 OD2 78.0 130.2 85.9 REMARK 620 5 ASP D 104 OD1 118.8 128.0 147.4 79.9 REMARK 620 6 ASP D 104 OD2 82.7 78.1 161.3 106.4 50.8 REMARK 620 7 FUL D 115 O2 139.8 87.3 95.0 142.2 79.3 84.0 REMARK 620 8 FUL D 115 O3 147.5 143.1 72.6 76.2 75.5 123.5 68.2 REMARK 620 9 FUC D1115 O2 139.8 87.3 95.0 142.2 79.3 84.0 0.0 68.2 REMARK 620 10 FUC D1115 O3 147.5 143.1 72.6 76.2 75.5 123.5 68.2 REMARK 620 0.0 68.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 9
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUL A 115 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC A 1115 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 116 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 117 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 118 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC B 115 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 116 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 117 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC C 115 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 116 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 117 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUL D 115 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 116 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC D 1115 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 117
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 LECB COMPLEXED WITH FUCOSE (DIFFERENT CRYSTAL FORM) REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB COMPLEXED WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB LIGAND-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB COMPLEXED WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB COMPLEXED WITH CORE TRIMANNOSIDE
DBREF 1OXC A 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 1OXC B 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 1OXC C 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 1OXC D 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115
SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY
HET FUL A 115 11 HET FUC A1115 11 HET CA A 116 1 HET CA A 117 1 HET SO4 A 118 5 HET FUC B 115 12 HET CA B 116 1 HET CA B 117 1 HET FUC C 115 12 HET CA C 116 1 HET CA C 117 1 HET FUL D 115 11 HET CA D 116 1 HET FUC D1115 11 HET CA D 117 1
HETNAM FUL BETA-L-FUCOSE HETNAM FUC ALPHA-L-FUCOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION
HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE
FORMUL 5 FUL 2(C6 H12 O5) FORMUL 6 FUC 4(C6 H12 O5) FORMUL 7 CA 8(CA 2+) FORMUL 9 SO4 O4 S 2- FORMUL 20 HOH *656(H2 O)
SHEET 1 A20 VAL A 5 THR A 7 0 SHEET 2 A20 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 A20 ARG A 72 PRO A 73 -1 O ARG A 72 N VAL A 69 SHEET 4 A20 LYS A 62 VAL A 69 -1 N VAL A 69 O ARG A 72 SHEET 5 A20 ARG A 13 VAL A 32 -1 N THR A 27 O SER A 68 SHEET 6 A20 GLU A 35 ASN A 56 -1 O GLU A 35 N VAL A 32 SHEET 7 A20 ARG A 13 VAL A 32 -1 O PHE A 14 N LEU A 55 SHEET 8 A20 ALA A 105 TRP A 111 -1 O VAL A 106 N PHE A 19 SHEET 9 A20 LEU A 87 GLU A 95 -1 N ASN A 88 O TRP A 111 SHEET 10 A20 ASP A 75 LEU A 83 -1 O ASP A 75 N GLU A 95 SHEET 11 A20 ASP D 75 LEU D 83 -1 O GLN D 80 N ILE A 82 SHEET 12 A20 LEU D 87 GLU D 95 -1 O LEU D 87 N LEU D 83 SHEET 13 A20 ALA D 105 TRP D 111 -1 N ALA D 105 O SER D 94 SHEET 14 A20 ARG D 13 VAL D 32 -1 N GLY D 15 O ASN D 110 SHEET 15 A20 GLU D 35 ASN D 56 -1 O GLU D 35 N VAL D 32 SHEET 16 A20 ARG D 13 VAL D 32 -1 N PHE D 14 O LEU D 55 SHEET 17 A20 LYS D 62 VAL D 69 -1 O GLN D 64 N LEU D 31 SHEET 18 A20 VAL D 5 THR D 7 -1 N PHE D 6 O VAL D 63 SHEET 19 A20 LYS D 62 VAL D 69 -1 O VAL D 63 N PHE D 6 SHEET 20 A20 ARG D 72 PRO D 73 -1 O ARG D 72 N VAL D 69 SHEET 1 B 6 VAL B 5 THR B 7 0 SHEET 2 B 6 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 B 6 ARG B 72 PRO B 73 -1 O ARG B 72 N VAL B 69 SHEET 4 B 6 LYS B 62 VAL B 69 -1 N VAL B 69 O ARG B 72 SHEET 5 B 6 GLN B 26 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 6 B 6 GLU B 35 GLY B 42 -1 O GLU B 35 N VAL B 32 SHEET 1 C15 ALA B 48 ASN B 56 0 SHEET 2 C15 ARG B 13 ALA B 20 -1 N PHE B 14 O LEU B 55 SHEET 3 C15 ALA B 105 TRP B 111 -1 O VAL B 106 N PHE B 19 SHEET 4 C15 LEU B 87 GLU B 95 -1 N ASN B 88 O TRP B 111 SHEET 5 C15 ASP B 75 LEU B 83 -1 N ASP B 75 O GLU B 95 SHEET 6 C15 ASP C 75 LEU C 83 -1 O GLN C 80 N ILE B 82 SHEET 7 C15 LEU C 87 GLU C 95 -1 O LEU C 87 N LEU C 83 SHEET 8 C15 ALA C 105 TRP C 111 -1 N ALA C 105 O SER C 94 SHEET 9 C15 ARG C 13 VAL C 32 -1 N GLY C 15 O ASN C 110 SHEET 10 C15 GLU C 35 ASN C 56 -1 O GLU C 35 N VAL C 32 SHEET 11 C15 ARG C 13 VAL C 32 -1 N PHE C 14 O LEU C 55 SHEET 12 C15 LYS C 62 VAL C 69 -1 O GLN C 64 N LEU C 31 SHEET 13 C15 VAL C 5 THR C 7 -1 N PHE C 6 O VAL C 63 SHEET 14 C15 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 15 C15 ARG C 72 PRO C 73 -1 O ARG C 72 N VAL C 69
LINK O ASN A 21 CA CA A 117 1555 1555 2.37 LINK OE1 GLU A 95 CA CA A 116 1555 1555 2.49 LINK OE2 GLU A 95 CA CA A 116 1555 1555 2.41 LINK OD1 ASP A 99 CA CA A 116 1555 1555 2.38 LINK OD1 ASP A 101 CA CA A 116 1555 1555 2.38 LINK OD2 ASP A 101 CA CA A 117 1555 1555 2.39 LINK OD1 ASN A 103 CA CA A 117 1555 1555 2.34 LINK OD1 ASP A 104 CA CA A 116 1555 1555 2.60 LINK OD1 ASP A 104 CA CA A 117 1555 1555 2.41 LINK OD2 ASP A 104 CA CA A 116 1555 1555 2.45 LINK O GLY A 114 CA CA B 117 1555 1555 2.42 LINK O ASN B 21 CA CA B 117 1555 1555 2.38 LINK OE1 GLU B 95 CA CA B 116 1555 1555 2.46 LINK OE2 GLU B 95 CA CA B 116 1555 1555 2.38 LINK OD1 ASP B 99 CA CA B 116 1555 1555 2.34 LINK OD1 ASP B 101 CA CA B 116 1555 1555 2.35 LINK OD2 ASP B 101 CA CA B 117 1555 1555 2.39 LINK OD1 ASN B 103 CA CA B 117 1555 1555 2.35 LINK OD1 ASP B 104 CA CA B 117 1555 1555 2.40 LINK OD1 ASP B 104 CA CA B 116 1555 1555 2.65 LINK OD2 ASP B 104 CA CA B 116 1555 1555 2.44 LINK O GLY B 114 CA CA A 117 1555 1555 2.45 LINK O ASN C 21 CA CA C 117 1555 1555 2.39 LINK OE1 GLU C 95 CA CA C 116 1555 1555 2.48 LINK OE2 GLU C 95 CA CA C 116 1555 1555 2.40 LINK OD1 ASP C 99 CA CA C 116 1555 1555 2.37 LINK OD1 ASP C 101 CA CA C 116 1555 1555 2.35 LINK OD2 ASP C 101 CA CA C 117 1555 1555 2.37 LINK OD1 ASN C 103 CA CA C 117 1555 1555 2.33 LINK OD1 ASP C 104 CA CA C 116 1555 1555 2.65 LINK OD1 ASP C 104 CA CA C 117 1555 1555 2.41 LINK OD2 ASP C 104 CA CA C 116 1555 1555 2.43 LINK O GLY C 114 CA CA D 117 1555 1555 2.47 LINK O ASN D 21 CA CA D 117 1555 1555 2.36 LINK OE1 GLU D 95 CA CA D 116 1555 1555 2.50 LINK OE2 GLU D 95 CA CA D 116 1555 1555 2.43 LINK OD1 ASP D 99 CA CA D 116 1555 1555 2.37 LINK OD1 ASP D 101 CA CA D 117 1555 1555 2.41 LINK OD2 ASP D 101 CA CA D 116 1555 1555 2.37 LINK OD1 ASN D 103 CA CA D 117 1555 1555 2.33 LINK OD1 ASP D 104 CA CA D 117 1555 1555 2.42 LINK OD1 ASP D 104 CA CA D 116 1555 1555 2.64 LINK OD2 ASP D 104 CA CA D 116 1555 1555 2.46 LINK O GLY D 114 CA CA C 117 1555 1555 2.43 LINK O2 AFUL A 115 CA CA A 116 1555 1555 2.48 LINK O3 AFUL A 115 CA CA A 116 1555 1555 2.56 LINK O3 AFUL A 115 CA CA A 117 1555 1555 2.53 LINK O4 AFUL A 115 CA CA A 117 1555 1555 2.53 LINK O2 BFUC A1115 CA CA A 116 1555 1555 2.48 LINK O3 BFUC A1115 CA CA A 116 1555 1555 2.56 LINK O3 BFUC A1115 CA CA A 117 1555 1555 2.53 LINK O4 BFUC A1115 CA CA A 117 1555 1555 2.53 LINK O2 FUC B 115 CA CA B 116 1555 1555 2.51 LINK O3 FUC B 115 CA CA B 117 1555 1555 2.53 LINK O3 FUC B 115 CA CA B 116 1555 1555 2.54 LINK O4 FUC B 115 CA CA B 117 1555 1555 2.54 LINK O2 FUC C 115 CA CA C 116 1555 1555 2.53 LINK O3 FUC C 115 CA CA C 116 1555 1555 2.54 LINK O3 FUC C 115 CA CA C 117 1555 1555 2.53 LINK O4 FUC C 115 CA CA C 117 1555 1555 2.51 LINK O2 AFUL D 115 CA CA D 116 1555 1555 2.50 LINK O3 AFUL D 115 CA CA D 117 1555 1555 2.55 LINK O3 AFUL D 115 CA CA D 116 1555 1555 2.57 LINK O4 AFUL D 115 CA CA D 117 1555 1555 2.52 LINK O2 BFUC D1115 CA CA D 116 1555 1555 2.50 LINK O3 BFUC D1115 CA CA D 117 1555 1555 2.55 LINK O3 BFUC D1115 CA CA D 116 1555 1555 2.57 LINK O4 BFUC D1115 CA CA D 117 1555 1555 2.52
CISPEP 1 TRP A 111 PRO A 112 0 -0.34 CISPEP 2 TRP B 111 PRO B 112 0 0.00 CISPEP 3 TRP C 111 PRO C 112 0 -0.51 CISPEP 4 TRP D 111 PRO D 112 0 -0.23
SITE 1 AC1 13 ASN A 21 SER A 22 SER A 23 GLU A 95 SITE 2 AC1 13 ASP A 96 ASP A 99 ASP A 101 ASP A 104 SITE 3 AC1 13 CA A 116 CA A 117 HOH A 155 HOH A 188 SITE 4 AC1 13 GLY B 114 SITE 1 AC2 13 ASN A 21 SER A 22 SER A 23 GLU A 95 SITE 2 AC2 13 ASP A 96 ASP A 99 ASP A 101 ASP A 104 SITE 3 AC2 13 CA A 116 CA A 117 HOH A 155 HOH A 273 SITE 4 AC2 13 GLY B 114 SITE 1 AC3 6 GLU A 95 ASP A 99 ASP A 101 ASP A 104 SITE 2 AC3 6 FUL A 115 FUC A1115 SITE 1 AC4 7 ASN A 21 ASP A 101 ASN A 103 ASP A 104 SITE 2 AC4 7 FUL A 115 FUC A1115 GLY B 114 SITE 1 AC5 9 THR A 2 THR A 12 ARG A 13 HOH A 143 SITE 2 AC5 9 HOH A 156 HOH A 187 HOH A 197 HOH A 204 SITE 3 AC5 9 HOH D 158 SITE 1 AC6 13 GLY A 114 ASN B 21 SER B 22 SER B 23 SITE 2 AC6 13 GLU B 95 ASP B 96 ASP B 99 ASP B 101 SITE 3 AC6 13 ASP B 104 CA B 116 CA B 117 HOH B 179 SITE 4 AC6 13 HOH B 255 SITE 1 AC7 5 GLU B 95 ASP B 99 ASP B 101 ASP B 104 SITE 2 AC7 5 FUC B 115 SITE 1 AC8 6 GLY A 114 ASN B 21 ASP B 101 ASN B 103 SITE 2 AC8 6 ASP B 104 FUC B 115 SITE 1 AC9 14 ASN C 21 SER C 22 SER C 23 GLU C 95 SITE 2 AC9 14 ASP C 96 ASP C 99 ASP C 101 ASP C 104 SITE 3 AC9 14 CA C 116 CA C 117 HOH C 146 THR D 45 SITE 4 AC9 14 GLY D 114 HOH D 145 SITE 1 BC1 5 GLU C 95 ASP C 99 ASP C 101 ASP C 104 SITE 2 BC1 5 FUC C 115 SITE 1 BC2 6 ASN C 21 ASP C 101 ASN C 103 ASP C 104 SITE 2 BC2 6 FUC C 115 GLY D 114 SITE 1 BC3 13 GLY C 114 ASN D 21 SER D 22 SER D 23 SITE 2 BC3 13 GLU D 95 ASP D 96 ASP D 99 ASP D 101 SITE 3 BC3 13 ASP D 104 CA D 116 CA D 117 HOH D 154 SITE 4 BC3 13 HOH D 216 SITE 1 BC4 6 GLU D 95 ASP D 99 ASP D 101 ASP D 104 SITE 2 BC4 6 FUL D 115 FUC D1115 SITE 1 BC5 13 GLY C 114 ASN D 21 SER D 22 SER D 23 SITE 2 BC5 13 GLU D 95 ASP D 96 ASP D 99 ASP D 101 SITE 3 BC5 13 ASP D 104 CA D 116 CA D 117 HOH D 154 SITE 4 BC5 13 HOH D 183 SITE 1 BC6 7 GLY C 114 ASN D 21 ASP D 101 ASN D 103 SITE 2 BC6 7 ASP D 104 FUL D 115 FUC D1115
CRYST1 49.088 73.058 99.889 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020372 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013688 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010011 0.00000