10 20 30 40 50 60 70 80 1OVO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEINASE INHIBITOR (KAZAL) 18-JAN-82 1OVO
TITLE CRYSTALLOGRAPHIC REFINEMENT OF JAPANESE QUAIL OVOMUCOID, A KAZAL-TYPE TITLE 2 INHIBITOR, AND MODEL BUILDING STUDIES OF COMPLEXES WITH SERINE TITLE 3 PROTEASES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: OVOMUCOID THIRD DOMAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE QUAIL; SOURCE 4 ORGANISM_TAXID: 93934
KEYWDS PROTEINASE INHIBITOR (KAZAL)
EXPDTA X-RAY DIFFRACTION
AUTHOR E.WEBER,E.PAPAMOKOS,W.BODE,R.HUBER,I.KATO,M.LASKOWSKIJUNIOR
REVDAT 10 13-JUL-11 1OVO 1 VERSN REVDAT 9 24-FEB-09 1OVO 1 VERSN REVDAT 8 01-APR-03 1OVO 1 JRNL REVDAT 7 08-MAR-95 1OVO 1 REMARK REVDAT 6 22-OCT-84 1OVO 1 SHEET REVDAT 5 23-FEB-84 1OVO 1 REMARK REVDAT 4 30-SEP-83 1OVO 1 REVDAT REVDAT 3 13-JUN-83 1OVO 1 AUTHOR JRNL REMARK REVDAT 2 30-AUG-82 1OVO 1 JRNL SHEET REVDAT 1 26-MAY-82 1OVO 0
JRNL AUTH E.PAPAMOKOS,E.WEBER,W.BODE,R.HUBER,M.W.EMPIE,I.KATO, JRNL AUTH 2 M.LASKOWSKI JR. JRNL TITL CRYSTALLOGRAPHIC REFINEMENT OF JAPANESE QUAIL OVOMUCOID, A JRNL TITL 2 KAZAL-TYPE INHIBITOR, AND MODEL BUILDING STUDIES OF JRNL TITL 3 COMPLEXES WITH SERINE PROTEASES. JRNL REF J.MOL.BIOL. V. 158 515 1982 JRNL REFN ISSN 0022-2836 JRNL PMID 6752426 JRNL DOI 10.1016/0022-2836(82)90212-1
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MARQUART,J.WALTER,J.DEISENHOFER,W.BODE,R.HUBER REMARK 1 TITL THE GEOMETRY OF THE REACTIVE SITE AND OF THE PEPTIDE GROUPS REMARK 1 TITL 2 IN TRYPSIN, TRYPSINOGEN AND ITS COMPLEXES WITH INHIBITORS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 39 480 1983 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.WEBER,E.PAPAMOKOS,W.BODE,R.HUBER,I.KATO,M.LASKOWSKIJUNIOR REMARK 1 TITL CRYSTALLIZATION,CRYSTAL STRUCTURE ANALYSIS AND MOLECULAR REMARK 1 TITL 2 MODEL OF THE THIRD DOMAIN OF JAPANESE QUAIL OVOMUCOID,A REMARK 1 TITL 3 KAZAL TYPE INHIBITOR REMARK 1 REF J.MOL.BIOL. V. 149 109 1981 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REAL-SPACE REFINEMENT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AN OCCUPANCY OF 0.0 INDICATES THAT NO SIGNIFICANT ELECTRON REMARK 3 DENSITY WAS FOUND IN THE FINAL FOURIER MAP.
REMARK 4 REMARK 4 1OVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MTRIX RECORDS BELOW DESCRIBE THE NON-CRYSTALLOGRAPHIC REMARK 300 RELATIONSHIPS AMONG THE INDIVIDUAL DOMAINS IN THIS ENTRY. REMARK 300 MTRIX 1 RELATES CHAIN A TO CHAIN B BY A PSEUDO-FOUR-FOLD REMARK 300 ROTATION. MTRIX 2 RELATES CHAIN C TO CHAIN D BY A REMARK 300 PSEUDO-TWO-FOLD ROTATION. SEE REFERENCE 2 ABOVE FOR A REMARK 300 COMPLETE DESCRIPTION OF THESE SYMMETRY AXES. THESE REMARK 300 MATRICES WERE OBTAINED BY COMPARING THE BACKBONE AND CB REMARK 300 ATOMS OF THE MOLECULES. (THE FIRST SIX RESIDUES WERE REMARK 300 EXCLUDED FROM THIS CALCULATION.)
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 92.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 92.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 184.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 92.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 138.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -46.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 46.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 138.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 184.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 92.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 138.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -46.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 46.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 138.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 1 CD1 CD2 REMARK 480 GLU A 10 CD OE1 OE2 REMARK 480 LYS A 13 NZ REMARK 480 LYS A 18 CB CG CD CE NZ REMARK 480 ASP A 19 CG OD1 OD2 REMARK 480 ARG A 21 NH1 NH2 REMARK 480 LYS A 29 CG CD CE NZ REMARK 480 GLU A 43 CD OE1 OE2 REMARK 480 ASN A 45 CB CG REMARK 480 LYS A 55 CD CE NZ REMARK 480 GLU B 10 CD OE1 OE2 REMARK 480 LYS B 18 CG CD CE NZ REMARK 480 LYS B 29 CG CD CE NZ REMARK 480 GLU B 43 O CG CD OE1 OE2 REMARK 480 ASN B 45 CB CG OD1 ND2 REMARK 480 LYS B 55 CE NZ REMARK 480 GLU C 10 CD OE1 OE2 REMARK 480 LYS C 18 NZ REMARK 480 LYS C 29 CD CE NZ REMARK 480 GLU C 43 CD OE1 OE2 REMARK 480 LYS C 55 NZ REMARK 480 LYS D 18 CD CE NZ REMARK 480 LYS D 29 CD CE NZ REMARK 480 GLU D 43 CD OE1 OE2 REMARK 480 ASN D 45 CG OD1 ND2 REMARK 480 LYS D 55 NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 LEU D 1 CD2 LEU D 1 3645 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG D 21 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 63.75 25.55 REMARK 500 ARG B 21 71.37 -167.65 REMARK 500 ASN B 45 73.34 23.02 REMARK 500 ASN B 51 -60.02 -99.85 REMARK 500 THR D 49 -168.39 -125.60 REMARK 500 ASN D 51 -64.55 -93.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 27 0.07 SIDE CHAIN REMARK 500 ASN A 33 0.08 SIDE CHAIN REMARK 500 ASN A 36 0.10 SIDE CHAIN REMARK 500 ASN A 39 0.09 SIDE CHAIN REMARK 500 ASN B 51 0.07 SIDE CHAIN REMARK 500 ASP C 19 0.08 SIDE CHAIN REMARK 500 ASN C 28 0.08 SIDE CHAIN REMARK 500 ASN C 45 0.07 SIDE CHAIN REMARK 500 ASN C 51 0.08 SIDE CHAIN REMARK 500 ASP D 19 0.09 SIDE CHAIN REMARK 500 ASN D 36 0.08 SIDE CHAIN REMARK 500 ASN D 45 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 4 13.20 REMARK 500 ARG B 21 10.58 REMARK 500 TYR B 31 10.22 REMARK 500 VAL C 4 12.95 REMARK 500 THR C 30 10.12 REMARK 500 GLU C 43 10.53 REMARK 500 GLU D 43 10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR D 30 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE MATERIAL USED IS POLYMORPHIC WITH 20 PER CENT GLY 32 REMARK 999 AND 80 PER CENT SER 32. IT IS PREMATURE AT THE PRESENT REMARK 999 STAGE OF THE ANALYSIS TO DRAW CONCLUSIONS ABOUT AN ORDERED REMARK 999 ARRANGEMENT OF THE VARIANTS IN THE CRYSTAL. THE MAJOR REMARK 999 POLYMORPH HAS BEEN ASSIGNED TO THE FOUR DOMAINS IN THIS REMARK 999 ENTRY.
DBREF 1OVO A 1 56 UNP P01003 IOVO_COTJA 131 186 DBREF 1OVO B 1 56 UNP P01003 IOVO_COTJA 131 186 DBREF 1OVO C 1 56 UNP P01003 IOVO_COTJA 131 186 DBREF 1OVO D 1 56 UNP P01003 IOVO_COTJA 131 186
SEQRES 1 A 56 LEU ALA ALA VAL SER VAL ASP CYS SER GLU TYR PRO LYS SEQRES 2 A 56 PRO ALA CYS PRO LYS ASP TYR ARG PRO VAL CYS GLY SER SEQRES 3 A 56 ASP ASN LYS THR TYR SER ASN LYS CYS ASN PHE CYS ASN SEQRES 4 A 56 ALA VAL VAL GLU SER ASN GLY THR LEU THR LEU ASN HIS SEQRES 5 A 56 PHE GLY LYS CYS SEQRES 1 B 56 LEU ALA ALA VAL SER VAL ASP CYS SER GLU TYR PRO LYS SEQRES 2 B 56 PRO ALA CYS PRO LYS ASP TYR ARG PRO VAL CYS GLY SER SEQRES 3 B 56 ASP ASN LYS THR TYR SER ASN LYS CYS ASN PHE CYS ASN SEQRES 4 B 56 ALA VAL VAL GLU SER ASN GLY THR LEU THR LEU ASN HIS SEQRES 5 B 56 PHE GLY LYS CYS SEQRES 1 C 56 LEU ALA ALA VAL SER VAL ASP CYS SER GLU TYR PRO LYS SEQRES 2 C 56 PRO ALA CYS PRO LYS ASP TYR ARG PRO VAL CYS GLY SER SEQRES 3 C 56 ASP ASN LYS THR TYR SER ASN LYS CYS ASN PHE CYS ASN SEQRES 4 C 56 ALA VAL VAL GLU SER ASN GLY THR LEU THR LEU ASN HIS SEQRES 5 C 56 PHE GLY LYS CYS SEQRES 1 D 56 LEU ALA ALA VAL SER VAL ASP CYS SER GLU TYR PRO LYS SEQRES 2 D 56 PRO ALA CYS PRO LYS ASP TYR ARG PRO VAL CYS GLY SER SEQRES 3 D 56 ASP ASN LYS THR TYR SER ASN LYS CYS ASN PHE CYS ASN SEQRES 4 D 56 ALA VAL VAL GLU SER ASN GLY THR LEU THR LEU ASN HIS SEQRES 5 D 56 PHE GLY LYS CYS
FORMUL 5 HOH *46(H2 O)
HELIX 1 HA ASN A 33 SER A 44 1 12 HELIX 2 HB ASN B 33 SER B 44 1 12 HELIX 3 HC ASN C 33 SER C 44 1 12 HELIX 4 HD ASN D 33 SER D 44 1 12
SHEET 1 SA 3 ASN A 28 SER A 32 0 SHEET 2 SA 3 PRO A 22 SER A 26 -1 N VAL A 23 O TYR A 31 SHEET 3 SA 3 THR A 49 GLY A 54 -1 O HIS A 52 N CYS A 24 SHEET 1 SB 3 ASN B 28 SER B 32 0 SHEET 2 SB 3 PRO B 22 SER B 26 -1 N VAL B 23 O TYR B 31 SHEET 3 SB 3 THR B 49 GLY B 54 -1 O HIS B 52 N CYS B 24 SHEET 1 SC 3 ASN C 28 SER C 32 0 SHEET 2 SC 3 PRO C 22 SER C 26 -1 N VAL C 23 O TYR C 31 SHEET 3 SC 3 THR C 49 GLY C 54 -1 O HIS C 52 N CYS C 24 SHEET 1 SD 3 ASN D 28 SER D 32 0 SHEET 2 SD 3 PRO D 22 SER D 26 -1 N VAL D 23 O TYR D 31 SHEET 3 SD 3 THR D 49 GLY D 54 -1 O HIS D 52 N CYS D 24
SSBOND 1 CYS A 8 CYS A 38 1555 1555 2.04 SSBOND 2 CYS A 16 CYS A 35 1555 1555 2.01 SSBOND 3 CYS A 24 CYS A 56 1555 1555 2.03 SSBOND 4 CYS B 8 CYS B 38 1555 1555 2.02 SSBOND 5 CYS B 16 CYS B 35 1555 1555 2.02 SSBOND 6 CYS B 24 CYS B 56 1555 1555 2.03 SSBOND 7 CYS C 8 CYS C 38 1555 1555 2.02 SSBOND 8 CYS C 16 CYS C 35 1555 1555 2.00 SSBOND 9 CYS C 24 CYS C 56 1555 1555 2.00 SSBOND 10 CYS D 8 CYS D 38 1555 1555 2.02 SSBOND 11 CYS D 16 CYS D 35 1555 1555 1.99 SSBOND 12 CYS D 24 CYS D 56 1555 1555 2.01
CISPEP 1 TYR A 11 PRO A 12 0 -0.70 CISPEP 2 TYR B 11 PRO B 12 0 4.99 CISPEP 3 TYR C 11 PRO C 12 0 12.43 CISPEP 4 TYR D 11 PRO D 12 0 10.24
CRYST1 92.000 92.000 64.000 90.00 90.00 90.00 P 4 21 2 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010870 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010870 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015625 0.00000
MTRIX1 1 0.371400 -0.582900 -0.722600 79.05000 1
MTRIX2 1 -0.460300 0.560300 -0.688600 63.26000 1
MTRIX3 1 0.806400 0.588500 -0.060200 -32.97000 1
MTRIX1 2 0.384700 -0.922800 -0.017400 100.13000 1
MTRIX2 2 -0.922200 -0.385100 0.022200 147.39000 1
MTRIX3 2 -0.027300 0.007500 -0.999600 131.37000 1