10 20 30 40 50 60 70 80 1OVN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE 27-MAR-03 1OVN
TITLE CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF DROSOPHILA TITLE 2 WIND-- A PDI-RELATED PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: WINDBEUTEL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: WIND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-30 (QIAGEN)
KEYWDS WIND, WINDBEUTEL, PDI-DBETA, PDI, PROTEIN DISULFIDE KEYWDS 2 ISOMERASE, PIPE, DORSAL-VENTRAL PATTERNING, CHAPERONE
EXPDTA X-RAY DIFFRACTION
AUTHOR Q.MA,C.GUO,K.BARNEWITZ,G.M.SHELDRICK,H.D.SOLING,I.USON, AUTHOR 2 D.M.FERRARI
REVDAT 2 24-FEB-09 1OVN 1 VERSN REVDAT 1 24-FEB-04 1OVN 0
JRNL AUTH Q.MA,C.GUO,K.BARNEWITZ,G.M.SHELDRICK,H.D.SOLING, JRNL AUTH 2 I.USON,D.M.FERRARI JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 DROSOPHILA WIND, A PROTEIN-DISULFIDE JRNL TITL 3 ISOMERASE-RELATED PROTEIN. JRNL REF J.BIOL.CHEM. V. 278 44600 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12941941 JRNL DOI 10.1074/JBC.M307966200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : 5%,THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3363 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4563 ; 2.132 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2578 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1691 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2238 ; 2.921 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3517 ; 4.579 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1125 ; 5.910 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1046 ; 8.304 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: METHOD OF MINIMIZATION: SPARSE MATRIX
REMARK 4 REMARK 4 1OVN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018711.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.811 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, XPREP, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05650 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.79 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27590 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXD, SHELXE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIXING 6UL [5.8MG/ML WIND IN 5MM REMARK 280 HEPES PH7.5, 25MM NACL, 0.0025%(V/V) BETA-MERCAPTOETHANOL] REMARK 280 WITH 3UL [0.1M MES PH6.1, 0.1M CSCL, 2MM CACL2, 16%(V/V) PEG REMARK 280 300] CRYO-CONDITION: 0.1M MES PH6.1, 20%(V/V) PEG 300, 10%(V/ REMARK 280 V)GLYCEROL, 0.1M CSCL, 2MM CACL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.33900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.17900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.33900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.17900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 345 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 VAL A 22 REMARK 465 THR A 23 REMARK 465 GLU A 253 REMARK 465 LYS A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 465 LEU A 257 REMARK 465 MET B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 SER B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 LYS B 249 REMARK 465 THR B 250 REMARK 465 ALA B 251 REMARK 465 PRO B 252 REMARK 465 GLU B 253 REMARK 465 LYS B 254 REMARK 465 GLU B 255 REMARK 465 GLU B 256 REMARK 465 LEU B 257
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 NZ REMARK 470 ILE A 51 CD1 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CD CE NZ REMARK 470 GLU A 60 CD OE1 OE2 REMARK 470 LYS A 67 NZ REMARK 470 LYS A 71 CD CE NZ REMARK 470 LYS A 74 CB CG CD CE NZ REMARK 470 LYS A 84 CB CG CD CE NZ REMARK 470 ASP A 85 CB CG OD1 OD2 REMARK 470 TYR A 86 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 86 OH REMARK 470 GLU A 88 CB CG CD OE1 OE2 REMARK 470 LEU A 89 CB CG CD1 CD2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 99 CD CE NZ REMARK 470 ASP A 102 CB CG OD1 OD2 REMARK 470 ILE A 108 CD1 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 ASP A 130 CB CG OD1 OD2 REMARK 470 ALA A 138 CB REMARK 470 ILE A 144 CD1 REMARK 470 ARG A 146 NE CZ NH1 NH2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ILE A 163 CD1 REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 174 NZ REMARK 470 GLN A 176 OE1 NE2 REMARK 470 LYS A 178 NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 GLN A 189 CD OE1 NE2 REMARK 470 ARG A 192 CZ NH1 NH2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 214 CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 228 NZ REMARK 470 LYS A 229 NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 THR A 248 CG2 REMARK 470 ALA A 251 CB REMARK 470 THR B 23 CB OG1 CG2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 NZ REMARK 470 GLU B 60 CD OE1 OE2 REMARK 470 SER B 68 OG REMARK 470 LYS B 71 CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 ASP B 85 CB CG OD1 OD2 REMARK 470 TYR B 86 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 86 OH REMARK 470 GLU B 88 CB CG CD OE1 OE2 REMARK 470 LEU B 89 CB CG CD1 CD2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 ASP B 102 CG OD1 OD2 REMARK 470 LYS B 103 CB CG CD CE NZ REMARK 470 LYS B 112 CE NZ REMARK 470 SER B 123 OG REMARK 470 ASP B 130 CG OD1 OD2 REMARK 470 LYS B 133 NZ REMARK 470 ARG B 146 NE CZ NH1 NH2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 151 CB CG CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LEU B 157 CD1 CD2 REMARK 470 LYS B 158 CD CE NZ REMARK 470 ASN B 159 CB CG OD1 ND2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 LEU B 169 CG CD1 CD2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ILE B 172 CG2 CD1 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LYS B 174 CD CE NZ REMARK 470 GLN B 176 CG CD OE1 NE2 REMARK 470 ALA B 177 CB REMARK 470 LYS B 178 CE NZ REMARK 470 GLN B 179 CD OE1 NE2 REMARK 470 GLU B 180 CB CG CD OE1 OE2 REMARK 470 GLN B 181 OE1 NE2 REMARK 470 LEU B 182 CB CG CD1 CD2 REMARK 470 THR B 183 CB OG1 CG2 REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 GLU B 186 CB CG CD OE1 OE2 REMARK 470 GLN B 187 CG CD OE1 NE2 REMARK 470 GLN B 188 CB CG CD OE1 NE2 REMARK 470 LEU B 195 CD1 CD2 REMARK 470 ILE B 196 CD1 REMARK 470 MET B 198 CE REMARK 470 ARG B 199 CD NE CZ NH1 NH2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 GLU B 210 CB CG CD OE1 OE2 REMARK 470 LYS B 214 NZ REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 LYS B 223 CB CG CD CE NZ REMARK 470 VAL B 224 CB CG1 CG2 REMARK 470 THR B 225 OG1 CG2 REMARK 470 GLU B 226 CB CG CD OE1 OE2 REMARK 470 LYS B 228 CB CG CD CE NZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 LEU B 232 CD1 CD2 REMARK 470 LEU B 233 CD1 CD2 REMARK 470 LYS B 235 CE NZ REMARK 470 LEU B 236 CD2 REMARK 470 GLU B 240 CD OE1 OE2 REMARK 470 ARG B 243 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 244 CG1 CG2 REMARK 470 HIS B 245 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 246 CB CG CD CE NZ REMARK 470 VAL B 247 CG1 CG2 REMARK 470 THR B 248 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 152 CD GLU A 152 OE1 0.077 REMARK 500 VAL A 156 CB VAL A 156 CG2 0.131 REMARK 500 TYR A 197 CD1 TYR A 197 CE1 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU A 132 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ILE B 108 CG1 - CB - CG2 ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 53 64.19 39.50 REMARK 500 LYS A 84 19.69 40.72 REMARK 500 ASP A 85 96.21 -35.50 REMARK 500 TYR A 86 86.92 -161.92 REMARK 500 ASP A 102 -29.30 -36.85 REMARK 500 ASN A 104 51.86 -142.16 REMARK 500 LYS A 112 52.15 -114.39 REMARK 500 ALA A 251 -97.98 -42.34 REMARK 500 ASP B 85 -105.09 -70.65 REMARK 500 ASN B 159 49.66 29.82 REMARK 500 THR B 225 -166.87 -73.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 100 ASP A 101 -135.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 1 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 O REMARK 620 2 GLY B 113 O 81.4 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS B 1
DBREF 1OVN A 22 257 UNP O44342 WBL_DROME 22 257 DBREF 1OVN B 22 257 UNP O44342 WBL_DROME 22 257
SEQADV 1OVN MET A 10 UNP O44342 CLONING ARTIFACT SEQADV 1OVN ARG A 11 UNP O44342 CLONING ARTIFACT SEQADV 1OVN GLY A 12 UNP O44342 CLONING ARTIFACT SEQADV 1OVN SER A 13 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 14 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 15 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 16 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 17 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 18 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS A 19 UNP O44342 CLONING ARTIFACT SEQADV 1OVN GLY A 20 UNP O44342 CLONING ARTIFACT SEQADV 1OVN SER A 21 UNP O44342 CLONING ARTIFACT SEQADV 1OVN MET B 10 UNP O44342 CLONING ARTIFACT SEQADV 1OVN ARG B 11 UNP O44342 CLONING ARTIFACT SEQADV 1OVN GLY B 12 UNP O44342 CLONING ARTIFACT SEQADV 1OVN SER B 13 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 14 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 15 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 16 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 17 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 18 UNP O44342 CLONING ARTIFACT SEQADV 1OVN HIS B 19 UNP O44342 CLONING ARTIFACT SEQADV 1OVN GLY B 20 UNP O44342 CLONING ARTIFACT SEQADV 1OVN SER B 21 UNP O44342 CLONING ARTIFACT
SEQRES 1 A 248 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 248 THR CYS THR GLY CYS VAL ASP LEU ASP GLU LEU SER PHE SEQRES 3 A 248 GLU LYS THR VAL GLU ARG PHE PRO TYR SER VAL VAL LYS SEQRES 4 A 248 PHE ASP ILE ALA TYR PRO TYR GLY GLU LYS HIS GLU ALA SEQRES 5 A 248 PHE THR ALA PHE SER LYS SER ALA HIS LYS ALA THR LYS SEQRES 6 A 248 ASP LEU LEU ILE ALA THR VAL GLY VAL LYS ASP TYR GLY SEQRES 7 A 248 GLU LEU GLU ASN LYS ALA LEU GLY ASP ARG TYR LYS VAL SEQRES 8 A 248 ASP ASP LYS ASN PHE PRO SER ILE PHE LEU PHE LYS GLY SEQRES 9 A 248 ASN ALA ASP GLU TYR VAL GLN LEU PRO SER HIS VAL ASP SEQRES 10 A 248 VAL THR LEU ASP ASN LEU LYS ALA PHE VAL SER ALA ASN SEQRES 11 A 248 THR PRO LEU TYR ILE GLY ARG ASP GLY CYS ILE LYS GLU SEQRES 12 A 248 PHE ASN GLU VAL LEU LYS ASN TYR ALA ASN ILE PRO ASP SEQRES 13 A 248 ALA GLU GLN LEU LYS LEU ILE GLU LYS LEU GLN ALA LYS SEQRES 14 A 248 GLN GLU GLN LEU THR ASP PRO GLU GLN GLN GLN ASN ALA SEQRES 15 A 248 ARG ALA TYR LEU ILE TYR MET ARG LYS ILE HIS GLU VAL SEQRES 16 A 248 GLY TYR ASP PHE LEU GLU GLU GLU THR LYS ARG LEU LEU SEQRES 17 A 248 ARG LEU LYS ALA GLY LYS VAL THR GLU ALA LYS LYS GLU SEQRES 18 A 248 GLU LEU LEU ARG LYS LEU ASN ILE LEU GLU VAL PHE ARG SEQRES 19 A 248 VAL HIS LYS VAL THR LYS THR ALA PRO GLU LYS GLU GLU SEQRES 20 A 248 LEU SEQRES 1 B 248 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 B 248 THR CYS THR GLY CYS VAL ASP LEU ASP GLU LEU SER PHE SEQRES 3 B 248 GLU LYS THR VAL GLU ARG PHE PRO TYR SER VAL VAL LYS SEQRES 4 B 248 PHE ASP ILE ALA TYR PRO TYR GLY GLU LYS HIS GLU ALA SEQRES 5 B 248 PHE THR ALA PHE SER LYS SER ALA HIS LYS ALA THR LYS SEQRES 6 B 248 ASP LEU LEU ILE ALA THR VAL GLY VAL LYS ASP TYR GLY SEQRES 7 B 248 GLU LEU GLU ASN LYS ALA LEU GLY ASP ARG TYR LYS VAL SEQRES 8 B 248 ASP ASP LYS ASN PHE PRO SER ILE PHE LEU PHE LYS GLY SEQRES 9 B 248 ASN ALA ASP GLU TYR VAL GLN LEU PRO SER HIS VAL ASP SEQRES 10 B 248 VAL THR LEU ASP ASN LEU LYS ALA PHE VAL SER ALA ASN SEQRES 11 B 248 THR PRO LEU TYR ILE GLY ARG ASP GLY CYS ILE LYS GLU SEQRES 12 B 248 PHE ASN GLU VAL LEU LYS ASN TYR ALA ASN ILE PRO ASP SEQRES 13 B 248 ALA GLU GLN LEU LYS LEU ILE GLU LYS LEU GLN ALA LYS SEQRES 14 B 248 GLN GLU GLN LEU THR ASP PRO GLU GLN GLN GLN ASN ALA SEQRES 15 B 248 ARG ALA TYR LEU ILE TYR MET ARG LYS ILE HIS GLU VAL SEQRES 16 B 248 GLY TYR ASP PHE LEU GLU GLU GLU THR LYS ARG LEU LEU SEQRES 17 B 248 ARG LEU LYS ALA GLY LYS VAL THR GLU ALA LYS LYS GLU SEQRES 18 B 248 GLU LEU LEU ARG LYS LEU ASN ILE LEU GLU VAL PHE ARG SEQRES 19 B 248 VAL HIS LYS VAL THR LYS THR ALA PRO GLU LYS GLU GLU SEQRES 20 B 248 LEU
HET CS B 1 1
HETNAM CS CESIUM ION
FORMUL 3 CS CS 1+ FORMUL 4 HOH *152(H2 O)
HELIX 1 1 SER A 34 GLU A 40 1 7 HELIX 2 2 GLY A 56 THR A 73 1 18 HELIX 3 3 ASN A 91 TYR A 98 1 8 HELIX 4 4 ASP A 101 PHE A 105 5 5 HELIX 5 5 THR A 128 THR A 140 1 13 HELIX 6 6 ILE A 150 GLU A 155 1 6 HELIX 7 7 ASN A 159 ILE A 163 5 5 HELIX 8 8 PRO A 164 LEU A 182 1 19 HELIX 9 9 ASP A 184 GLY A 205 1 22 HELIX 10 10 TYR A 206 ALA A 221 1 16 HELIX 11 11 THR A 225 VAL A 241 1 17 HELIX 12 12 SER B 34 GLU B 40 1 7 HELIX 13 13 GLY B 56 THR B 73 1 18 HELIX 14 14 ASN B 91 LYS B 99 1 9 HELIX 15 15 THR B 128 ALA B 138 1 11 HELIX 16 16 ILE B 150 LYS B 158 1 9 HELIX 17 17 PRO B 164 GLU B 180 1 17 HELIX 18 18 ASP B 184 GLY B 205 1 22 HELIX 19 19 ASP B 207 ALA B 221 1 15 HELIX 20 20 THR B 225 VAL B 241 1 17
SHEET 1 A 5 VAL A 28 LEU A 30 0 SHEET 2 A 5 LEU A 76 GLY A 82 1 O THR A 80 N LEU A 30 SHEET 3 A 5 TYR A 44 ASP A 50 1 N VAL A 46 O LEU A 77 SHEET 4 A 5 SER A 107 PHE A 111 -1 O SER A 107 N PHE A 49 SHEET 5 A 5 TYR A 118 GLN A 120 -1 O VAL A 119 N LEU A 110 SHEET 1 B 5 VAL B 28 ASP B 29 0 SHEET 2 B 5 LEU B 76 VAL B 83 1 O ILE B 78 N VAL B 28 SHEET 3 B 5 TYR B 44 ILE B 51 1 N ASP B 50 O VAL B 83 SHEET 4 B 5 SER B 107 PHE B 111 -1 O SER B 107 N PHE B 49 SHEET 5 B 5 TYR B 118 GLN B 120 -1 O VAL B 119 N LEU B 110
SSBOND 1 CYS A 24 CYS A 27 1555 1555 2.09 SSBOND 2 CYS B 24 CYS B 27 1555 1555 2.06
LINK CS CS B 1 O GLU B 40 1555 1555 3.03 LINK CS CS B 1 O GLY B 113 1555 1555 3.16
CISPEP 1 PHE A 105 PRO A 106 0 -5.13 CISPEP 2 PHE B 105 PRO B 106 0 2.72
SITE 1 AC1 2 GLU B 40 GLY B 113
CRYST1 106.678 50.358 98.616 90.00 112.84 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009374 0.000000 0.003948 0.00000
SCALE2 0.000000 0.019858 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011003 0.00000