10 20 30 40 50 60 70 80 1OSX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 20-MAR-03 1OSX
TITLE SOLUTION STRUCTURE OF THE EXTRACELLULAR DOMAIN OF BLYS TITLE 2 RECEPTOR 3 (BR3)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY COMPND 3 MEMBER 13C; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 6 SYNONYM: B CELL- ACTIVATING FACTOR RECEPTOR, BAFF RECEPTOR, COMPND 7 BAFF-R, BLYS RECEPTOR 3; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF13C OR BAFFR OR BR3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS CYSTEINE-RICH DOMAIN, EXTRACELLULAR DOMAIN, TUMOR NECROSIS KEYWDS 2 FACTOR RECEPTOR, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.C.GORDON,B.PAN,S.G.HYMOWITZ,J.P.YIN,R.F.KELLEY, AUTHOR 2 A.G.COCHRAN,M.YAN,V.M.DIXIT,W.J.FAIRBROTHER,M.A.STAROVASNIK
REVDAT 2 24-FEB-09 1OSX 1 VERSN REVDAT 1 27-MAY-03 1OSX 0
JRNL AUTH N.C.GORDON,B.PAN,S.G.HYMOWITZ,J.P.YIN,R.F.KELLEY, JRNL AUTH 2 A.G.COCHRAN,M.YAN,V.M.DIXIT,W.J.FAIRBROTHER, JRNL AUTH 3 M.A.STAROVASNIK JRNL TITL BAFF/BLYS RECEPTOR 3 COMPRISES A MINIMAL TNF JRNL TITL 2 RECEPTOR-LIKE MODULE THAT ENCODES A HIGHLY FOCUSED JRNL TITL 3 LIGAND-BINDING SITE JRNL REF BIOCHEMISTRY V. 42 5977 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12755599 JRNL DOI 10.1021/BI034017G
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ONLY 19 RESIDUES, INCLUDING CYS19 REMARK 3 THROUGH LEU37 ARE ORDERED IN SOLUTION, WHILE THE REST OF THE REMARK 3 EXTRACELLULAR DOMAIN IS HIGHLY FLEXIBLE (BASED ON 1H-15N REMARK 3 HETERONUCLEAR NOE ANALYSIS). FURTHERMORE, THE BAFF-BINDING REMARK 3 DOMAIN OF BR3 WAS FOUND TO RESIDE WITHIN A FRAGMENT CONSISTING REMARK 3 OF THR17-ARG42 DENOTED MINIBR3. THUS, THE STRUCTURE OF BR3 WAS REMARK 3 CALCULATED ONLY FOR THESE 26 RESIDUES, BASED ON A TOTAL OF 315 REMARK 3 DISTANCE AND 46 DIHEDRAL ANGLE RESTRAINTS DERIVED FROM REMARK 3 ANALYSIS OF NMR DATA COLLEECTED ON THE ENTIRE BR3 ECD.
REMARK 4 REMARK 4 1OSX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018636.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50 MM NACL, 25 MM NA2PO4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM BR3 U-15N,25 MM REMARK 210 NA2PO4, 50 MM NACL, 0.1 MM REMARK 210 NAN3, 0.1 MM DSS-D10; 1.5 MM REMARK 210 BR3 U-15N,13C,25 MM NA2PO4, 50 REMARK 210 MM NACL, 0.1 MM NAN3, 0.1 MM REMARK 210 DSS-D10; 1.5 MM BR3 U-15N,13C, REMARK 210 25 MM NA2PO4, 50 MM NACL, 0.1 REMARK 210 MM NAN3, 0.1 MM DSS-D10 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, HNHA, REMARK 210 HNHB, 3D HCCH-COSY, 3D HCCH- REMARK 210 TOCSY, 3D HNCO, 3D HNCA, 3D REMARK 210 CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, FELIX 98, X-PLOR REMARK 210 98 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 128 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 RESTRAINT VIOLATION ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 43 REMARK 465 LYS A 44 REMARK 465 PRO A 45 REMARK 465 ALA A 46 REMARK 465 GLY A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 SER A 50 REMARK 465 PRO A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 ARG A 54 REMARK 465 THR A 55 REMARK 465 ALA A 56 REMARK 465 LEU A 57 REMARK 465 GLN A 58 REMARK 465 PRO A 59 REMARK 465 GLN A 60 REMARK 465 GLU A 61
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 18 -163.60 -71.04 REMARK 500 1 CYS A 19 -146.78 -58.46 REMARK 500 1 PRO A 21 -24.62 -37.64 REMARK 500 1 HIS A 31 -177.68 -174.00 REMARK 500 1 ALA A 34 101.53 -40.05 REMARK 500 1 CYS A 35 115.77 -39.85 REMARK 500 1 LEU A 37 17.00 56.26 REMARK 500 1 THR A 40 131.11 62.52 REMARK 500 1 PRO A 41 -95.13 -75.19 REMARK 500 2 PRO A 18 155.31 -38.69 REMARK 500 2 CYS A 19 -145.70 -69.22 REMARK 500 2 PRO A 21 -22.83 -38.22 REMARK 500 2 ARG A 30 46.53 80.26 REMARK 500 2 HIS A 31 -158.44 -173.07 REMARK 500 2 ALA A 34 103.87 -47.68 REMARK 500 2 CYS A 35 99.95 -42.83 REMARK 500 2 LEU A 38 -157.18 -140.00 REMARK 500 2 THR A 40 68.18 -160.57 REMARK 500 3 CYS A 19 -157.36 -75.85 REMARK 500 3 PRO A 21 -22.78 -37.27 REMARK 500 3 HIS A 31 -175.40 -173.00 REMARK 500 3 ALA A 34 105.59 -55.13 REMARK 500 3 CYS A 35 100.04 -40.85 REMARK 500 3 LEU A 37 0.15 56.82 REMARK 500 3 THR A 40 64.65 29.55 REMARK 500 3 PRO A 41 100.41 -49.73 REMARK 500 4 CYS A 19 -156.68 -75.81 REMARK 500 4 PRO A 21 -23.69 -37.39 REMARK 500 4 ARG A 30 31.30 80.05 REMARK 500 4 HIS A 31 -176.79 -175.09 REMARK 500 4 ALA A 34 107.87 -52.20 REMARK 500 5 PRO A 18 -93.65 -72.82 REMARK 500 5 CYS A 19 -158.33 -78.87 REMARK 500 5 PRO A 21 -35.56 -34.78 REMARK 500 5 ARG A 30 24.99 80.12 REMARK 500 5 ALA A 34 107.22 -49.01 REMARK 500 5 CYS A 35 122.44 -39.98 REMARK 500 5 LEU A 37 19.50 54.56 REMARK 500 5 ARG A 39 116.66 -171.99 REMARK 500 6 PRO A 18 112.35 -38.59 REMARK 500 6 CYS A 19 -146.79 -76.10 REMARK 500 6 PRO A 21 -9.31 -48.58 REMARK 500 6 HIS A 31 -151.72 -173.96 REMARK 500 6 ALA A 34 106.57 -52.01 REMARK 500 6 CYS A 35 99.84 -46.58 REMARK 500 6 LEU A 38 -103.19 -99.90 REMARK 500 6 ARG A 39 -34.70 -172.50 REMARK 500 7 CYS A 19 -158.27 -106.67 REMARK 500 7 PRO A 21 -22.48 -37.57 REMARK 500 7 HIS A 31 -172.85 -173.63 REMARK 500 7 ALA A 34 104.03 -54.23 REMARK 500 7 CYS A 35 99.92 -42.92 REMARK 500 7 PRO A 41 151.05 -40.36 REMARK 500 8 PRO A 18 -6.65 -50.77 REMARK 500 8 CYS A 19 -155.53 -70.60 REMARK 500 8 PRO A 21 -24.51 -37.16 REMARK 500 8 ARG A 30 53.72 80.02 REMARK 500 8 ALA A 34 102.45 -55.40 REMARK 500 8 CYS A 35 99.89 -39.98 REMARK 500 8 LEU A 37 10.20 53.32 REMARK 500 8 ARG A 39 41.48 -78.29 REMARK 500 9 PRO A 18 98.68 -39.81 REMARK 500 9 CYS A 19 -145.43 -65.76 REMARK 500 9 PRO A 21 -23.08 -37.82 REMARK 500 9 HIS A 31 -142.41 -168.09 REMARK 500 9 ARG A 39 134.55 -39.53 REMARK 500 10 PRO A 18 -91.16 -70.74 REMARK 500 10 CYS A 19 -143.74 -78.11 REMARK 500 10 PRO A 21 -25.71 -38.89 REMARK 500 10 LEU A 28 -10.30 -49.47 REMARK 500 10 ALA A 34 108.44 -46.27 REMARK 500 10 LEU A 38 -67.25 -99.95 REMARK 500 10 PRO A 41 -90.24 -70.42 REMARK 500 11 CYS A 19 -157.57 -77.79 REMARK 500 11 PRO A 21 -21.86 -37.96 REMARK 500 11 ARG A 30 37.53 80.25 REMARK 500 11 HIS A 31 -173.43 -174.63 REMARK 500 11 ALA A 34 106.01 -54.42 REMARK 500 11 LEU A 38 49.96 -140.06 REMARK 500 11 PRO A 41 124.52 -37.25 REMARK 500 12 CYS A 19 -152.24 -139.98 REMARK 500 12 PRO A 21 -23.58 -37.59 REMARK 500 12 ARG A 30 49.88 80.05 REMARK 500 12 HIS A 31 -178.23 -173.39 REMARK 500 12 ALA A 34 100.51 -53.42 REMARK 500 12 CYS A 35 99.95 -39.77 REMARK 500 12 LEU A 38 40.47 -140.07 REMARK 500 12 ARG A 39 -81.26 -135.12 REMARK 500 12 THR A 40 55.31 -158.84 REMARK 500 12 PRO A 41 -88.48 -69.66 REMARK 500 13 CYS A 19 -144.65 -67.21 REMARK 500 13 PRO A 21 -36.59 -37.43 REMARK 500 13 CYS A 35 99.76 -54.52 REMARK 500 13 LEU A 38 -91.97 -140.05 REMARK 500 13 THR A 40 70.28 28.90 REMARK 500 13 PRO A 41 95.70 -60.00 REMARK 500 14 PRO A 18 -94.84 -72.62 REMARK 500 14 CYS A 19 -143.63 -158.44 REMARK 500 14 PRO A 21 -39.45 -37.83 REMARK 500 14 ALA A 34 102.97 -48.58 REMARK 500 14 CYS A 35 99.81 -40.11 REMARK 500 14 LEU A 37 17.16 44.19 REMARK 500 14 ARG A 39 37.17 -73.71 REMARK 500 15 CYS A 19 -145.91 -59.60 REMARK 500 15 PRO A 21 -24.72 -37.52 REMARK 500 15 HIS A 31 -150.99 -173.50 REMARK 500 15 CYS A 35 99.92 -53.05 REMARK 500 15 LEU A 38 50.22 -100.57 REMARK 500 15 ARG A 39 -134.55 -146.02 REMARK 500 16 PRO A 18 26.41 -70.40 REMARK 500 16 CYS A 19 -145.98 -69.30 REMARK 500 16 PRO A 21 -23.11 -37.91 REMARK 500 16 VAL A 29 -30.34 -136.91 REMARK 500 16 ARG A 30 46.61 80.41 REMARK 500 16 HIS A 31 -156.95 -172.84 REMARK 500 16 ALA A 34 104.12 -48.63 REMARK 500 16 CYS A 35 99.78 -43.73 REMARK 500 16 LEU A 37 -0.08 58.40 REMARK 500 16 ARG A 39 5.67 -65.41 REMARK 500 16 THR A 40 77.39 -160.89 REMARK 500 16 PRO A 41 82.95 -46.85 REMARK 500 17 CYS A 19 -147.09 -98.04 REMARK 500 17 PRO A 21 -26.94 -36.93 REMARK 500 17 ARG A 30 60.04 71.03 REMARK 500 17 HIS A 31 -161.03 -172.33 REMARK 500 17 ALA A 34 99.26 -51.99 REMARK 500 17 CYS A 35 99.88 -39.98 REMARK 500 17 LEU A 38 -135.27 -99.64 REMARK 500 17 ARG A 39 -70.52 -40.68 REMARK 500 17 THR A 40 76.02 -170.48 REMARK 500 18 CYS A 19 -144.01 -75.95 REMARK 500 18 PRO A 21 -8.96 -48.33 REMARK 500 18 ALA A 34 107.53 -56.64 REMARK 500 18 CYS A 35 99.85 -48.99 REMARK 500 18 LEU A 37 9.56 51.08 REMARK 500 18 THR A 40 -49.42 178.47 REMARK 500 19 PRO A 18 -8.95 -48.75 REMARK 500 19 CYS A 19 -153.52 -136.36 REMARK 500 19 PRO A 21 -21.92 -38.07 REMARK 500 19 ARG A 30 30.79 74.17 REMARK 500 19 HIS A 31 -172.63 -177.52 REMARK 500 19 CYS A 35 99.89 -52.01 REMARK 500 19 LEU A 38 -102.48 -99.67 REMARK 500 20 CYS A 19 -150.36 -71.42 REMARK 500 20 PRO A 21 -22.74 -37.94 REMARK 500 20 HIS A 31 -153.16 -176.23 REMARK 500 20 ALA A 34 107.31 -58.33 REMARK 500 20 CYS A 35 99.93 -43.63 REMARK 500 20 LEU A 37 1.77 56.90 REMARK 500 20 LEU A 38 -72.85 -101.19 REMARK 500 20 THR A 40 64.90 34.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MPV RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF BHPBR3; BR3 RESIDUES 26-31 EMBEDDED REMARK 900 IN A BETA-HAIRPIN PEPTIDE REMARK 900 RELATED ID: 1OSG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BHPBR3 IN COMPLEX WITH BAFF
DBREF 1OSX A 1 61 UNP Q96RJ3 TR13C_HUMAN 1 61
SEQRES 1 A 61 MET ARG ARG GLY PRO ARG SER LEU ARG GLY ARG ASP ALA SEQRES 2 A 61 PRO ALA PRO THR PRO CYS VAL PRO ALA GLU CYS PHE ASP SEQRES 3 A 61 LEU LEU VAL ARG HIS CYS VAL ALA CYS GLY LEU LEU ARG SEQRES 4 A 61 THR PRO ARG PRO LYS PRO ALA GLY ALA SER SER PRO ALA SEQRES 5 A 61 PRO ARG THR ALA LEU GLN PRO GLN GLU
SHEET 1 A 2 GLU A 23 ASP A 26 0 SHEET 2 A 2 HIS A 31 ALA A 34 -1 O HIS A 31 N ASP A 26
SSBOND 1 CYS A 19 CYS A 32 1555 1555 2.03 SSBOND 2 CYS A 24 CYS A 35 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000