1OPZ - Header Asymmetric Unit

HEADER HYDROLASE 06-MAR-03 1OPZ

TITLE A CORE MUTATION AFFECTING THE FOLDING PROPERTIES OF A TITLE 2 SOLUBLE DOMAIN OF THE ATPASE PROTEIN COPA FROM BACILLUS TITLE 3 SUBTILIS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTENTIAL COPPER-TRANSPORTING ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE FIRST N-TERMINAL WATER SOLUBLE DOMAIN OF COMPND 5 COPA; COMPND 6 EC: 3.6.3.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YVGX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A

KEYWDS MUTATION, FOLDING, ABBAB FOLD, HYDROLASE

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,L.GONNELI,X.C.SU

REVDAT 2 24-FEB-09 1OPZ 1 VERSN REVDAT 1 16-MAR-04 1OPZ 0

JRNL AUTH L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,L.GONNELLI,X.C.SU JRNL TITL A CORE MUTATION AFFECTING THE FOLDING PROPERTIES JRNL TITL 2 OF A SOLUBLE DOMAIN OF THE ATPASE PROTEIN COPA JRNL TITL 3 FROM BACILLUS SUBTILIS. JRNL REF J.MOL.BIOL. V. 331 473 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12888353 JRNL DOI 10.1016/S0022-2836(03)00769-1

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 5.0 REMARK 3 AUTHORS : PEARLMAN, CASE, CALDWELL, ROSS, CHEATHAM, REMARK 3 FERGUSON, SEIBEL, SINGH, WEINER, KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1OPZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018547.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE + 2 MMDTT REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM APOD1S46VCOPA, 20MM REMARK 210 PHOSPHATE, 90%H2O, 10%D2O,2.0 REMARK 210 MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNHA, HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.3, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, RESTRAINED REMARK 210 ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODEL REMARK 210 IS THE AVERAGE OF 30 REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 15N LABELED REMARK 210 D1S46VCOPA

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 17 -136.28 51.35 REMARK 500 ALA A 18 57.27 32.93 REMARK 500 PRO A 52 7.94 -67.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 50 0.09 SIDE_CHAIN REMARK 500 ARG A 76 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OQ3 RELATED DB: PDB REMARK 900 RELATED ID: 1OQ6 RELATED DB: PDB

DBREF 1OPZ A 1 76 UNP O32220 COPA_BACSU 1 76

SEQADV 1OPZ VAL A 46 UNP O32220 SER 46 ENGINEERED SEQADV 1OPZ ILE A 73 UNP O32220 THR 73 CLONING ARTIFACT SEQADV 1OPZ GLY A 75 UNP O32220 LYS 75 CLONING ARTIFACT SEQADV 1OPZ ARG A 76 UNP O32220 ALA 76 CLONING ARTIFACT

SEQRES 1 A 76 MET LEU SER GLU GLN LYS GLU ILE ALA MET GLN VAL SER SEQRES 2 A 76 GLY MET THR CYS ALA ALA CYS ALA ALA ARG ILE GLU LYS SEQRES 3 A 76 GLY LEU LYS ARG MET PRO GLY VAL THR ASP ALA ASN VAL SEQRES 4 A 76 ASN LEU ALA THR GLU THR VAL ASN VAL ILE TYR ASP PRO SEQRES 5 A 76 ALA GLU THR GLY THR ALA ALA ILE GLN GLU LYS ILE GLU SEQRES 6 A 76 LYS LEU GLY TYR HIS VAL VAL ILE GLU GLY ARG

HELIX 1 1 ALA A 19 ARG A 30 1 12 HELIX 2 2 LEU A 41 THR A 43 5 3 HELIX 3 3 GLY A 56 GLY A 68 1 13

SHEET 1 A 4 VAL A 34 ASN A 40 0 SHEET 2 A 4 THR A 45 TYR A 50 -1 O ASN A 47 N ASN A 38 SHEET 3 A 4 LYS A 6 SER A 13 -1 N MET A 10 O VAL A 46 SHEET 4 A 4 HIS A 70 VAL A 72 -1 O VAL A 72 N GLN A 11

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000