10 20 30 40 50 60 70 80 1OO3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 03-MAR-03 1OO3
TITLE P395S MUTANT OF THE P85 REGULATORY SUBUNIT OF THE N- TITLE 2 TERMINAL SRC HOMOLOGY 2 DOMAIN OF PI3-KINASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: P85 N-SH2; COMPND 6 SYNONYM: PI3-KINASE P85-ALPHA SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS SRC HOMOLOGY 2 DOMAIN P85 REGULATORY SUBUNIT MUTANT, KEYWDS 2 PROTEIN BINDING
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR U.L.GUENTHER,B.WEYRAUCH,B.SCHAFFHAUSEN
REVDAT 4 24-FEB-09 1OO3 1 VERSN REVDAT 3 19-JUL-05 1OO3 1 REMARK REVDAT 2 03-MAY-05 1OO3 1 JRNL REVDAT 1 25-MAR-03 1OO3 0
JRNL AUTH U.L.GUENTHER,B.WEYRAUCH,X.ZHANG,B.SCHAFFHAUSEN JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE P395S JRNL TITL 2 MUTANT OF THE N-SH2 DOMAIN OF THE P85 SUBUNIT OF JRNL TITL 3 PI3 KINASE: AN SH2 DOMAIN WITH ALTERED SPECIFICITY JRNL REF BIOCHEMISTRY V. 42 11120 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14503862 JRNL DOI 10.1021/BI034353X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 97.0 REMARK 3 AUTHORS : MSI INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1113 NOE-DERIVED, DISTANCE REMARK 3 CONSTRAINTS, 85 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1OO3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018490.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1M KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM P395S-15N,13C, 0.1M KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNCA-J, REMARK 210 HN(CO)CA, HCC(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, XWINNMR 2.5, REMARK 210 PRONTO 3D 19990506, TALOS REMARK 210 1999.019.15.47, NMR2ST 1.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 12 CD GLU A 12 OE2 0.114 REMARK 500 GLU A 21 CD GLU A 21 OE2 0.113 REMARK 500 GLU A 22 CD GLU A 22 OE2 0.116 REMARK 500 GLU A 25 CD GLU A 25 OE2 0.116 REMARK 500 GLU A 83 CD GLU A 83 OE2 0.110 REMARK 500 GLU A 91 CD GLU A 91 OE2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 17 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 29 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 39 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 HIS A 45 ND1 - CE1 - NE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 HIS A 65 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 HIS A 87 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 46.95 -82.81 REMARK 500 TRP A 13 -2.71 -59.53 REMARK 500 ASP A 17 89.87 -160.69 REMARK 500 ARG A 20 -51.88 71.04 REMARK 500 GLU A 21 21.94 -63.37 REMARK 500 GLU A 22 -53.16 177.96 REMARK 500 LEU A 27 -39.66 -36.97 REMARK 500 ALA A 31 -106.35 72.57 REMARK 500 LEU A 36 112.98 -164.68 REMARK 500 MET A 44 -78.94 -151.42 REMARK 500 HIS A 45 -130.05 -152.03 REMARK 500 PHE A 64 -179.53 70.47 REMARK 500 ARG A 66 55.88 25.22 REMARK 500 ASP A 67 -41.71 69.51 REMARK 500 ASP A 74 -116.32 -130.84 REMARK 500 THR A 77 -51.98 79.65 REMARK 500 ASN A 79 -67.80 -154.01 REMARK 500 VAL A 82 -44.61 -141.35 REMARK 500 ASN A 86 97.62 -169.55 REMARK 500 TYR A 88 -53.71 67.80 REMARK 500 ALA A 94 4.04 -62.07 REMARK 500 TYR A 96 -60.89 -98.59 REMARK 500 ASP A 101 178.53 50.95 REMARK 500 VAL A 102 -96.34 -135.47 REMARK 500 LEU A 104 35.92 -161.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 8 GLN A 9 -146.12 REMARK 500 TRP A 15 GLY A 16 -143.73 REMARK 500 LYS A 26 LEU A 27 147.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OO4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED TO A PEPTIDE DERIVED FROM PDGFR
DBREF 1OO3 A 1 111 UNP P23727 P85A_BOVIN 321 431
SEQADV 1OO3 SER A 60 UNP P23727 LEU 380 CONFLICT SEQADV 1OO3 SER A 75 UNP P23727 PRO 395 ENGINEERED
SEQRES 1 A 111 GLY MET ASN ASN ASN MET SER LEU GLN ASP ALA GLU TRP SEQRES 2 A 111 TYR TRP GLY ASP ILE SER ARG GLU GLU VAL ASN GLU LYS SEQRES 3 A 111 LEU ARG ASP THR ALA ASP GLY THR PHE LEU VAL ARG ASP SEQRES 4 A 111 ALA SER THR LYS MET HIS GLY ASP TYR THR LEU THR LEU SEQRES 5 A 111 ARG LYS GLY GLY ASN ASN LYS SER ILE LYS ILE PHE HIS SEQRES 6 A 111 ARG ASP GLY LYS TYR GLY PHE SER ASP SER LEU THR PHE SEQRES 7 A 111 ASN SER VAL VAL GLU LEU ILE ASN HIS TYR ARG ASN GLU SEQRES 8 A 111 SER LEU ALA GLN TYR ASN PRO LYS LEU ASP VAL LYS LEU SEQRES 9 A 111 LEU TYR PRO VAL SER LYS TYR
HELIX 1 1 ASN A 24 THR A 30 1 7 HELIX 2 2 SER A 92 TYR A 96 5 5
SHEET 1 A 2 THR A 34 VAL A 37 0 SHEET 2 A 2 LEU A 50 ARG A 53 -1 O THR A 51 N LEU A 36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000