10 20 30 40 50 60 70 80 1OO2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 03-MAR-03 1OO2
TITLE CRYSTAL STRUCTURE OF TRANSTHYRETIN FROM SPARUS AURATA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPARUS AURATA; SOURCE 3 ORGANISM_COMMON: GILTHEAD SEABREAM; SOURCE 4 ORGANISM_TAXID: 8175; SOURCE 5 GENE: TTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B
KEYWDS TRANSTHYRETIN, RETINOL-BINDING PROTEIN, TETRAMER, TRANSPORT KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR N.PASQUATO,I.RAMAZZINA,C.FOLLI,R.BATTISTUTTA,R.BERNI, AUTHOR 2 G.ZANOTTI
REVDAT 2 24-FEB-09 1OO2 1 VERSN REVDAT 1 20-JAN-04 1OO2 0
JRNL AUTH C.FOLLI,N.PASQUATO,I.RAMAZZINA,R.BATTISTUTTA, JRNL AUTH 2 G.ZANOTTI,R.BERNI JRNL TITL DISTINCTIVE BINDING AND STRUCTURAL PROPERTIES OF JRNL TITL 2 PISCINE TRANSTHYRETIN. JRNL REF FEBS LETT. V. 555 279 2003 JRNL REFN ISSN 0014-5793 JRNL PMID 14644428 JRNL DOI 10.1016/S0014-5793(03)01248-1
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HORNBERG,ENEQVIST,T.,A.OLOFSSON,E.LUNDGREN, REMARK 1 AUTH 2 A.E.SAUER-ERIKSSON REMARK 1 TITL A COMPARATIVE ANALYSIS OF 23 STRUCTURES OF THE REMARK 1 TITL 2 AMYLOIDOGENIC PROTEIN TRANSTHYRETIN REMARK 1 REF J.MOL.BIOL. V. 302 649 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4078 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.L.MONACO,M.RIZZI,A.CODA REMARK 1 TITL STRUCTURE OF A COMPLEX OF TWO PLASMA PROTEINS: REMARK 1 TITL 2 TRANSTHYRETIN AND RETINOL-BINDING PROTEIN REMARK 1 REF SCIENCE V. 268 1039 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.NAYLOR,M.E.NEWCOMER REMARK 1 TITL THE STRUCTURE OF HUMAN RETINOL-BINDING PROTEIN REMARK 1 TITL 2 (RBP) WITH ITS CARRIER PROTEIN TRANSTHYRETIN REMARK 1 TITL 3 REVEALS AN INTERACTION WITH THE CARBOXY TERMINUS REMARK 1 TITL 4 OF RBP REMARK 1 REF BIOCHEMISTRY V. 38 2647 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI982291I
REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.194 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.197 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 11.100 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6040 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 54369 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.190 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.193 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 11.100 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 5398 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 48594 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3891.00 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 15579 REMARK 3 NUMBER OF RESTRAINTS : 14689 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 ANGLE DISTANCES (A) : 0.020 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.056 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.059 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.077 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.077 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56
REMARK 4 REMARK 4 1OO2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018489.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.559 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : 0.14600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1F41 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, CADMIO CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.22600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.81100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.22600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.81100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TETRAMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL REMARK 300 ASSEMBLY
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE1 GLU A 100 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 208 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 125 REMARK 465 HIS A 126 REMARK 465 GLU A 127 REMARK 465 VAL B 125 REMARK 465 HIS B 126 REMARK 465 GLU B 127 REMARK 465 VAL C 125 REMARK 465 HIS C 126 REMARK 465 GLU C 127 REMARK 465 VAL D 125 REMARK 465 HIS D 126 REMARK 465 GLU D 127
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 100 OE1 GLU A 100 2655 2.02 REMARK 500 OD2 ASP A 38 CD CD C 401 3545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CD GLU A 100 OE1 0.772 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.773 REMARK 500 SER A 124 C SER A 124 O 0.450 REMARK 500 SER B 124 C SER B 124 O 1.571 REMARK 500 SER C 124 C SER C 124 O 2.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 100 OE1 - CD - OE2 ANGL. DEV. = -54.5 DEGREES REMARK 500 GLU A 100 CG - CD - OE1 ANGL. DEV. = -19.0 DEGREES REMARK 500 GLU A 100 CG - CD - OE2 ANGL. DEV. = -19.0 DEGREES REMARK 500 TYR B 116 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 SER B 124 CA - C - O ANGL. DEV. = -18.4 DEGREES REMARK 500 HIS C 98 C - N - CA ANGL. DEV. = 23.0 DEGREES REMARK 500 SER C 124 CA - C - O ANGL. DEV. = -61.9 DEGREES REMARK 500 SER D 124 CA - C - O ANGL. DEV. = -40.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 -66.55 -121.82 REMARK 500 PRO A 99 108.27 -6.03 REMARK 500 SER A 123 -169.97 -77.53 REMARK 500 PHE B 64 62.30 -117.52 REMARK 500 GLU B 100 -51.36 -125.79 REMARK 500 HIS B 102 -152.87 -86.83 REMARK 500 HIS C 98 62.83 -0.14 REMARK 500 GLU C 100 -78.39 -49.81 REMARK 500 HIS C 102 -100.92 -82.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 100 0.42 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 204 DISTANCE = 5.44 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 72 OE1 REMARK 620 2 HOH C 425 O 154.2 REMARK 620 3 HOH C 467 O 95.1 90.3 REMARK 620 4 ASP A 38 OD2 83.9 92.9 174.7 REMARK 620 5 HOH A 134 O 98.7 105.4 99.4 75.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 61 OE2 REMARK 620 2 GLU C 61 OE1 60.5 REMARK 620 3 HIS C 104 NE2 152.9 105.6 REMARK 620 4 HOH C 479 O 72.4 93.4 86.2 REMARK 620 5 HOH C 470 O 93.0 151.3 103.0 88.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 402
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FHN RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (MUTANT) REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN REMARK 900 RELATED ID: 1RLB RELATED DB: PDB REMARK 900 TRANSTHYRETIN-RBP COMPLEX REMARK 900 RELATED ID: 1QAB RELATED DB: PDB REMARK 900 TRANSTHYRETIN-RBP COMPLEX REMARK 900 RELATED ID: 1IE4 RELATED DB: PDB REMARK 900 RAT TRANSTHYRETIN COMPLEX WITH THYROXINE (T4)
DBREF 1OO2 A 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 B 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 C 9 127 UNP O93330 O93330_SPAAU 32 150 DBREF 1OO2 D 9 127 UNP O93330 O93330_SPAAU 32 150
SEQRES 1 A 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 A 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 A 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 A 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 A 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 A 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 A 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 A 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 A 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 A 119 HIS GLU SEQRES 1 B 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 B 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 B 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 B 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 B 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 B 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 B 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 B 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 B 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 B 119 HIS GLU SEQRES 1 C 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 C 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 C 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 C 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 C 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 C 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 C 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 C 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 C 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 C 119 HIS GLU SEQRES 1 D 119 ARG CYS PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS SEQRES 2 D 119 GLY THR PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN SEQRES 3 D 119 LYS THR ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY SEQRES 4 D 119 VAL THR ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR SEQRES 5 D 119 GLU GLN GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE SEQRES 6 D 119 ASP THR LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO SEQRES 7 D 119 PHE HIS GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO SEQRES 8 D 119 GLU GLY HIS GLY HIS TYR THR LEU ALA LEU LEU LEU SER SEQRES 9 D 119 PRO PHE SER TYR THR THR THR ALA VAL VAL SER SER VAL SEQRES 10 D 119 HIS GLU
HET CD C 401 1 HET CD C 402 1
HETNAM CD CADMIUM ION
FORMUL 5 CD 2(CD 2+) FORMUL 7 HOH *365(H2 O)
HELIX 1 1 THR A 60 PHE A 64 5 5 HELIX 2 2 ASP A 74 GLN A 82 1 9 HELIX 3 3 THR B 60 PHE B 64 5 5 HELIX 4 4 ASP B 74 GLY B 83 1 10 HELIX 5 5 THR C 60 PHE C 64 5 5 HELIX 6 6 ASP C 74 GLY C 83 1 10 HELIX 7 7 THR D 60 PHE D 64 5 5 HELIX 8 8 ASP D 74 GLY D 83 1 10
SHEET 1 A 8 THR A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O THR A 23 SHEET 3 A 8 TYR A 105 SER A 112 1 O TYR A 105 N MET A 13 SHEET 4 A 8 SER A 115 VAL A 122 -1 O SER A 115 N SER A 112 SHEET 5 A 8 SER B 115 SER B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 HIS B 104 SER B 112 -1 N HIS B 104 O SER B 123 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 A 8 THR B 23 PRO B 24 -1 O THR B 23 N ASP B 18 SHEET 1 B 8 TRP A 41 VAL A 48 0 SHEET 2 B 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 B 8 GLY A 67 PHE A 73 -1 O ARG A 70 N SER A 33 SHEET 4 B 8 HIS A 88 ALA A 97 -1 O ALA A 91 N PHE A 73 SHEET 5 B 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 B 8 GLY B 67 PHE B 73 -1 N GLY B 67 O ALA B 97 SHEET 7 B 8 ALA B 29 LYS B 35 -1 N SER B 33 O ARG B 70 SHEET 8 B 8 TRP B 41 VAL B 48 -1 O ALA B 45 N VAL B 32 SHEET 1 C 8 THR C 23 PRO C 24 0 SHEET 2 C 8 LEU C 12 ASP C 18 -1 N ASP C 18 O THR C 23 SHEET 3 C 8 HIS C 104 SER C 112 1 O TYR C 105 N MET C 13 SHEET 4 C 8 SER C 115 SER C 123 -1 O SER C 123 N HIS C 104 SHEET 5 C 8 SER D 115 VAL D 122 -1 O THR D 118 N TYR C 116 SHEET 6 C 8 TYR D 105 SER D 112 -1 N LEU D 110 O THR D 117 SHEET 7 C 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 C 8 THR D 23 PRO D 24 -1 O THR D 23 N ASP D 18 SHEET 1 D 8 TRP C 41 VAL C 48 0 SHEET 2 D 8 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 D 8 GLY C 67 PHE C 73 -1 O ARG C 70 N SER C 33 SHEET 4 D 8 HIS C 88 ALA C 97 -1 O ALA C 97 N GLY C 67 SHEET 5 D 8 HIS D 88 ALA D 97 -1 O GLU D 89 N VAL C 94 SHEET 6 D 8 GLY D 67 PHE D 73 -1 N PHE D 73 O ALA D 91 SHEET 7 D 8 ALA D 29 LYS D 35 -1 N LYS D 31 O GLU D 72 SHEET 8 D 8 TRP D 41 VAL D 48 -1 O ILE D 44 N VAL D 32
LINK CD CD C 401 OE1 GLU C 72 1555 1555 2.42 LINK CD CD C 402 OE2 GLU C 61 1555 1555 2.23 LINK CD CD C 402 OE1 GLU C 61 1555 1555 2.14 LINK CD CD C 402 NE2 HIS C 104 1555 1555 2.28 LINK CD CD C 401 O HOH C 425 1555 1555 2.37 LINK CD CD C 401 O HOH C 467 1555 1555 2.60 LINK CD CD C 402 O HOH C 479 1555 1555 2.59 LINK CD CD C 402 O HOH C 470 1555 1555 2.41 LINK CD CD C 401 OD2 ASP A 38 1555 3455 2.09 LINK CD CD C 401 O HOH A 134 1555 3455 2.52
CISPEP 1 GLY C 101 HIS C 102 0 -0.15
SITE 1 AC1 5 ASP A 38 HOH A 134 GLU C 72 HOH C 425 SITE 2 AC1 5 HOH C 467 SITE 1 AC2 4 GLU C 61 HIS C 104 HOH C 470 HOH C 479
CRYST1 96.452 65.622 70.834 90.00 97.40 90.00 C 1 2 1 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010368 0.000000 0.001347 0.00000
SCALE2 0.000000 0.015239 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014236 0.00000