10 20 30 40 50 60 70 80 1OKA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-RNA HYBRID 19-APR-96 1OKA
TITLE RNA/DNA CHIMERA, NMR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA/DNA CHIMERA (R(CCCA)D(AATGA)(DOT) COMPND 3 D(TCATTTGGG)); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA/DNA CHIMERA (R(CCCA)D(AATGA)(DOT) COMPND 8 D(TCATTTGGG)); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES
KEYWDS RNA-DNA, CHIMERA, RNASE H, REVERSE TRANSCRIPTASE, OKAZAKI KEYWDS 2 FRAGMENT, DNA/RNA COMPLEX, DNA-RNA HYBRID
EXPDTA SOLUTION NMR
NUMMDL 7
AUTHOR M.SALAZAR,O.Y.FEDOROFF,B.R.REID
REVDAT 2 24-FEB-09 1OKA 1 VERSN REVDAT 1 08-NOV-96 1OKA 0
JRNL AUTH M.SALAZAR,O.Y.FEDOROFF,B.R.REID JRNL TITL STRUCTURE OF CHIMERIC DUPLEX JUNCTIONS: SOLUTION JRNL TITL 2 CONFORMATION OF THE RETROVIRAL OKAZAKI-LIKE JRNL TITL 3 FRAGMENT R(CCCA)D(AATGA).D(TCATTTGGG) FROM MOLONEY JRNL TITL 4 MURINE LEUKEMIA VIRUS. JRNL REF BIOCHEMISTRY V. 35 8126 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8679564 JRNL DOI 10.1021/BI9528917
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1OKA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT A 1 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DT A 4 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DT A 5 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DT A 5 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DT A 6 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DG A 8 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DG A 9 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 C B 2 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 C B 3 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DA B 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DA B 6 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DT B 7 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DG B 8 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DA B 9 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 DT A 1 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 DC A 2 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DT A 4 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 DT A 5 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 DT A 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DG A 8 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 DG A 9 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 C B 2 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 C B 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DA B 5 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 DA B 6 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 DT B 7 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 DG B 8 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DA B 9 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 DT A 1 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 3 DC A 2 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 3 DA A 3 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 DT A 4 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 3 DT A 5 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 DT A 6 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 3 DG A 7 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 DG A 8 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 DG A 9 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 C B 1 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 C B 2 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 3 C B 3 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 DA B 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 DA B 6 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 DT B 7 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 3 DG B 8 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 DA B 9 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 117 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 C B 1 0.08 SIDE_CHAIN REMARK 500 1 A B 4 0.07 SIDE_CHAIN REMARK 500 1 DA B 5 0.05 SIDE_CHAIN REMARK 500 2 C B 1 0.08 SIDE_CHAIN REMARK 500 2 A B 4 0.07 SIDE_CHAIN REMARK 500 2 DA B 5 0.07 SIDE_CHAIN REMARK 500 3 C B 1 0.08 SIDE_CHAIN REMARK 500 3 A B 4 0.08 SIDE_CHAIN REMARK 500 3 DA B 5 0.06 SIDE_CHAIN REMARK 500 4 C B 1 0.08 SIDE_CHAIN REMARK 500 4 A B 4 0.07 SIDE_CHAIN REMARK 500 4 DA B 5 0.06 SIDE_CHAIN REMARK 500 5 C B 1 0.08 SIDE_CHAIN REMARK 500 5 A B 4 0.08 SIDE_CHAIN REMARK 500 6 C B 1 0.07 SIDE_CHAIN REMARK 500 6 A B 4 0.07 SIDE_CHAIN REMARK 500 7 C B 1 0.07 SIDE_CHAIN REMARK 500 7 A B 4 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1OKA A 1 9 PDB 1OKA 1OKA 1 9 DBREF 1OKA B 1 9 PDB 1OKA 1OKA 1 9
SEQRES 1 A 9 DT DC DA DT DT DT DG DG DG SEQRES 1 B 9 C C C A DA DA DT DG DA
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000