10 20 30 40 50 60 70 80 1O0H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 21-FEB-03 1O0H
TITLE RIBONUCLEASE A IN COMPLEX WITH 5'-ADP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBONUCLEASE A; COMPND 5 EC: 3.1.27.5
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913
KEYWDS HYDROLASE, RIBONUCLEASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.D.LEONIDAS,N.G.OIKONOMAKOS,E.D.CHRYSINA,M.N.KOSMOPOULOU, AUTHOR 2 M.VLASSI
REVDAT 2 24-FEB-09 1O0H 1 VERSN REVDAT 1 09-DEC-03 1O0H 0
JRNL AUTH D.D.LEONIDAS,G.B.CHAVALI,N.G.OIKONOMAKOS, JRNL AUTH 2 E.D.CHRYSINA,M.N.KOSMOPOULOU,M.VLASSI,C.FRANKLING, JRNL AUTH 3 K.R.ACHARYA JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF RIBONUCLEASE JRNL TITL 2 A COMPLEXED WITH ADENYLIC AND URIDYLIC NUCLEOTIDE JRNL TITL 3 INHIBITORS. IMPLICATIONS FOR STRUCTURE-BASED JRNL TITL 4 DESIGN OF RIBONUCLEOLYTIC INHIBITORS JRNL REF PROTEIN SCI. V. 12 2559 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 14573867 JRNL DOI 10.1110/PS.03196603
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 66544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2000 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1622 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2716 ; 1.783 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3838 ; 0.809 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 5.084 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;14.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2202 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.270 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1727 ; 0.236 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1 ; 0.149 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 379 ; 0.296 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.177 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.555 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.606 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 79 ; 0.604 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1242 ; 1.173 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2006 ; 1.911 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 758 ; 2.171 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 710 ; 3.330 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2000 ; 1.242 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 541 ; 2.012 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1956 ; 2.375 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1O0H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB018420.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1AFU REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM SODIUM CITRATE BUFFER, 20% PEG REMARK 280 4000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.86100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.25750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.86100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.25750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1406 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1407 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 21 O HOH A 1401 0.28 REMARK 500 CB SER A 21 O HOH A 1401 1.43 REMARK 500 O HOH B 1235 O HOH B 1236 1.76 REMARK 500 O HOH B 1273 O HOH B 1374 1.76 REMARK 500 O HOH B 1143 O HOH B 1289 1.76 REMARK 500 O HOH B 1232 O HOH B 1233 1.82 REMARK 500 O HOH A 1229 O HOH A 1230 1.82 REMARK 500 O HOH A 1316 O HOH A 1396 1.86 REMARK 500 O HOH B 1200 O HOH B 1201 1.87 REMARK 500 NZ LYS B 61 O HOH B 1309 1.88 REMARK 500 CB GLN B 28 O HOH B 1374 1.92 REMARK 500 O HOH B 1128 O HOH B 1129 1.93 REMARK 500 O HOH A 1194 O HOH A 1195 2.01 REMARK 500 O HOH B 1281 O HOH B 1282 2.01 REMARK 500 O HOH A 1149 O HOH B 1216 2.02 REMARK 500 O ASN B 103 O HOH B 1290 2.04 REMARK 500 O HOH A 1126 O HOH A 1127 2.04 REMARK 500 O HOH B 1213 O HOH B 1214 2.06 REMARK 500 O HOH B 1149 O HOH B 1150 2.10 REMARK 500 ND2 ASN A 24 O HOH A 1226 2.12 REMARK 500 O HOH B 1183 O HOH B 1359 2.14 REMARK 500 O HOH A 1145 O HOH A 1287 2.15 REMARK 500 O HOH A 1215 O HOH A 1216 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1292 O HOH B 1292 2556 0.33 REMARK 500 O HOH B 1350 O HOH B 1365 2556 0.35 REMARK 500 O HOH A 1220 O HOH A 1221 4545 0.54 REMARK 500 CE LYS A 1 NH2 ARG A 85 1565 1.10 REMARK 500 O HOH B 1294 O HOH B 1294 2556 1.43 REMARK 500 NZ LYS A 1 NH2 ARG A 85 1565 1.74 REMARK 500 O HOH A 1202 O HOH A 1203 2655 1.78 REMARK 500 O HOH A 1281 O HOH B 1327 4546 1.99 REMARK 500 O HOH B 1225 O HOH B 1226 1565 2.01 REMARK 500 O HOH A 1238 O HOH A 1239 4545 2.01 REMARK 500 O HOH A 1398 O HOH A 1398 2655 2.03 REMARK 500 O HOH A 1157 O HOH B 1218 4546 2.03 REMARK 500 O HOH B 1259 O HOH B 1260 2556 2.07 REMARK 500 O HOH A 1364 O HOH A 1366 1545 2.07 REMARK 500 O HOH A 1399 O HOH B 1228 1565 2.13 REMARK 500 O HOH B 1170 O HOH B 1187 4556 2.15 REMARK 500 O HOH B 1291 O HOH B 1292 2556 2.17 REMARK 500 O HOH A 1170 O HOH A 1236 4545 2.18 REMARK 500 O HOH B 1384 O HOH B 1384 2556 2.18 REMARK 500 OG1 THR A 70 OE2 GLU B 111 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 16 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 135.41 -174.82 REMARK 500 SER A 18 33.54 -78.02 REMARK 500 ALA A 19 5.03 101.57 REMARK 500 ALA A 20 20.42 -78.98 REMARK 500 SER A 21 112.01 -36.16 REMARK 500 ARG A 39 179.22 174.95 REMARK 500 HIS A 48 63.65 -108.19 REMARK 500 GLN A 60 -141.39 -97.36 REMARK 500 SER B 16 -73.15 -38.86 REMARK 500 ALA B 19 -153.23 -133.86 REMARK 500 ALA B 20 -103.90 -67.97 REMARK 500 SER B 21 -84.56 167.97 REMARK 500 LYS B 37 -78.12 -59.23 REMARK 500 GLN B 60 -129.66 -107.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 16 THR A 17 147.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 16 12.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1216 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH B1229 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B1265 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH B1272 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1345 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH A1353 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH B1369 DISTANCE = 6.39 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1125 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1126
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O0F RELATED DB: PDB REMARK 900 COMPLEX WITH 3',5'-ADP REMARK 900 RELATED ID: 1O0M RELATED DB: PDB REMARK 900 COMPLEX WITH URIDINE-2'-PHOSPHATE REMARK 900 RELATED ID: 1O0N RELATED DB: PDB REMARK 900 COMPLEX WITH URIDINE-3'-PHOSPHATE REMARK 900 RELATED ID: 1O0O RELATED DB: PDB REMARK 900 COMPLEX WITH ADENOSINE-2',5'-DIPHOSPHATE
DBREF 1O0H A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 1O0H B 1 124 UNP P61823 RNAS1_BOVIN 27 150
SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL
HET ADP A1125 27 HET ADP B1126 27
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *541(H2 O)
HELIX 1 1 THR A 3 MET A 13 1 11 HELIX 2 2 ASN A 24 ARG A 33 1 10 HELIX 3 3 SER A 50 ALA A 56 1 7 HELIX 4 4 VAL A 57 GLN A 60 5 4 HELIX 5 5 THR B 3 MET B 13 1 11 HELIX 6 6 ASN B 24 ARG B 33 1 10 HELIX 7 7 SER B 50 VAL B 57 1 8 HELIX 8 8 CYS B 58 GLN B 60 5 3
SHEET 1 A 4 VAL A 116 VAL A 124 0 SHEET 2 A 4 TYR A 97 GLU A 111 -1 N ALA A 109 O VAL A 118 SHEET 3 A 4 CYS A 72 GLN A 74 -1 N TYR A 73 O VAL A 108 SHEET 4 A 4 LYS A 61 VAL A 63 -1 N LYS A 61 O GLN A 74 SHEET 1 B 4 VAL A 116 VAL A 124 0 SHEET 2 B 4 TYR A 97 GLU A 111 -1 N ALA A 109 O VAL A 118 SHEET 3 B 4 MET A 79 GLU A 86 -1 N ASP A 83 O THR A 100 SHEET 4 B 4 VAL A 43 VAL A 47 -1 N PHE A 46 O THR A 82 SHEET 1 C 4 VAL B 116 VAL B 124 0 SHEET 2 C 4 TYR B 97 GLU B 111 -1 N ALA B 109 O VAL B 118 SHEET 3 C 4 CYS B 72 GLN B 74 -1 N TYR B 73 O VAL B 108 SHEET 4 C 4 LYS B 61 VAL B 63 -1 N LYS B 61 O GLN B 74 SHEET 1 D 4 VAL B 116 VAL B 124 0 SHEET 2 D 4 TYR B 97 GLU B 111 -1 N ALA B 109 O VAL B 118 SHEET 3 D 4 MET B 79 GLU B 86 -1 N ASP B 83 O THR B 100 SHEET 4 D 4 VAL B 43 VAL B 47 -1 N PHE B 46 O THR B 82
SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.04 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.03 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.03 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.10 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.02 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.03 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.04 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.04
CISPEP 1 TYR A 92 PRO A 93 0 -0.50 CISPEP 2 ASN A 113 PRO A 114 0 3.82 CISPEP 3 TYR B 92 PRO B 93 0 -0.25 CISPEP 4 ASN B 113 PRO B 114 0 1.51
SITE 1 AC1 28 LYS A 7 GLN A 11 HIS A 12 LYS A 41 SITE 2 AC1 28 CYS A 65 ASN A 67 GLN A 69 ASN A 71 SITE 3 AC1 28 ALA A 109 GLU A 111 VAL A 118 HIS A 119 SITE 4 AC1 28 PHE A 120 HOH A1188 HOH A1189 HOH A1190 SITE 5 AC1 28 HOH A1191 HOH A1197 HOH A1287 HOH A1289 SITE 6 AC1 28 HOH A1300 HOH A1301 HOH A1303 HOH A1309 SITE 7 AC1 28 HOH A1310 HOH A1400 THR B 70 HOH B1197 SITE 1 AC2 13 GLN B 11 HIS B 12 LYS B 41 ASN B 67 SITE 2 AC2 13 HIS B 119 PHE B 120 HOH B1152 HOH B1157 SITE 3 AC2 13 HOH B1158 HOH B1207 HOH B1208 HOH B1209 SITE 4 AC2 13 HOH B1375
CRYST1 99.722 32.515 72.164 90.00 90.03 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010028 0.000000 0.000005 0.00000
SCALE2 0.000000 0.030755 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013857 0.00000