10 20 30 40 50 60 70 80 1NRE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL SURFACE PROTEIN 08-MAY-97 1NRE
TITLE RECEPTOR ASSOCIATED PROTEIN (RAP) DOMAIN 1, NMR, MINIMIZED TITLE 2 AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, DOMAIN 1, RESIDUES 17 - 97; COMPND 5 SYNONYM: RAP, LOW DENSITY LIPOPROTEIN RECEPTOR RELATED COMPND 6 PROTEIN, ALPHA=2=MACROGLOBULIN RECEPTOR ASSOCIATED PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT=7=H=6=UB
KEYWDS ALPHA2MACROGLOBULIN RECEPTOR ASSOCIATED PROTEIN, LOW KEYWDS 2 DENSITY LIPOPROTEIN RECEPTOR FAMILY ASSOCIATED PROTEIN, KEYWDS 3 LDLR FAMILY ASSOCIATED PROTEIN, HELIX BUNDLE, CELL SURFACE KEYWDS 4 PROTEIN
EXPDTA SOLUTION NMR
AUTHOR P.R.NIELSEN,F.M.POULSEN
REVDAT 2 24-FEB-09 1NRE 1 VERSN REVDAT 1 20-AUG-97 1NRE 0
JRNL AUTH P.R.NIELSEN,L.ELLGAARD,M.ETZERODT,H.C.THOGERSEN, JRNL AUTH 2 F.M.POULSEN JRNL TITL THE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF JRNL TITL 2 ALPHA2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 7521 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9207124 JRNL DOI 10.1073/PNAS.94.14.7521
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.NIELSEN,L.ELLGAARD,P.H.JENSEN,H.C.THOEGERSEN, REMARK 1 AUTH 2 F.M.POULSEN REMARK 1 TITL ALPHA2-MACROGLOBULIN RECEPTOR ASSOCIATED PROTEINS REMARK 1 TITL 2 CONSIST OF THREE DOMAINS WITH SIMILAR STRUCTURAL REMARK 1 TITL 3 MOTIFS. THE 1H, 15N, AND 13C CHEMICAL SHIFT REMARK 1 TITL 4 ASSIGNMENTS AND SECONDARY STRUCTURE OF THE REMARK 1 TITL 5 TRUNCATED N-TERMINAL DOMAIN OF HUMAN RAP REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH L.ELLGAARD,T.L.HOLTET,P.R.NIELSEN,M.ETZERODT, REMARK 1 AUTH 2 J.GLIEMANN,H.C.THOGERSEN REMARK 1 TITL DISSECTION OF THE DOMAIN ARCHITECTURE OF THE REMARK 1 TITL 2 ALPHA2MACROGLOBULIN-RECEPTOR-ASSOCIATED PROTEIN REMARK 1 REF EUR.J.BIOCHEM. V. 244 544 1997 REMARK 1 REFN ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NRE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : DG, MD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 54.21 -101.81 REMARK 500 LYS A 94 37.80 -151.55 REMARK 500 ASP A 95 -75.21 -116.36 REMARK 500 ALA A 96 -52.83 -135.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.31 SIDE_CHAIN REMARK 500 ARG A 34 0.31 SIDE_CHAIN REMARK 500 ARG A 41 0.31 SIDE_CHAIN REMARK 500 ARG A 54 0.32 SIDE_CHAIN REMARK 500 ARG A 76 0.30 SIDE_CHAIN REMARK 500 ARG A 79 0.32 SIDE_CHAIN REMARK 500 ARG A 97 0.29 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1NRE A 17 97 UNP P30533 AMRP_HUMAN 51 131
SEQRES 1 A 81 GLY GLU GLU PHE ARG MET GLU LYS LEU ASN GLN LEU TRP SEQRES 2 A 81 GLU LYS ALA GLN ARG LEU HIS LEU PRO PRO VAL ARG LEU SEQRES 3 A 81 ALA GLU LEU HIS ALA ASP LEU LYS ILE GLN GLU ARG ASP SEQRES 4 A 81 GLU LEU ALA TRP LYS LYS LEU LYS LEU ASP GLY LEU ASP SEQRES 5 A 81 GLU ASP GLY GLU LYS GLU ALA ARG LEU ILE ARG ASN LEU SEQRES 6 A 81 ASN VAL ILE LEU ALA LYS TYR GLY LEU ASP GLY LYS LYS SEQRES 7 A 81 ASP ALA ARG
HELIX 1 1 GLU A 23 ARG A 34 1 12 HELIX 2 2 PRO A 39 ASP A 65 1 27 HELIX 3 3 LYS A 73 TYR A 88 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000