10 20 30 40 50 60 70 80 1NPY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JAN-03 1NPY
TITLE STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN HI0607
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE COMPND 3 PROTEIN HI0607; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: HI0607; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7
KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR S.KOROLEV,O.KOROLEVA,T.ZAREMBINSKI,F.COLLART,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG)
REVDAT 4 24-FEB-09 1NPY 1 VERSN REVDAT 3 03-MAY-05 1NPY 1 JRNL REVDAT 2 18-JAN-05 1NPY 1 AUTHOR KEYWDS REMARK REVDAT 1 29-JUL-03 1NPY 0
JRNL AUTH S.SINGH,S.KOROLEV,O.KOROLEVA,T.ZAREMBINSKI, JRNL AUTH 2 F.COLLART,A.JOACHIMIAK,D.CHRISTENDAT JRNL TITL CRYSTAL STRUCTURE OF A NOVEL SHIKIMATE JRNL TITL 2 DEHYDROGENASE FROM HAEMOPHILUS INFLUENZAE. JRNL REF J.BIOL.CHEM. V. 280 17101 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15735308 JRNL DOI 10.1074/JBC.M412753200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 102713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 350 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 1149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8534 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 7769 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11531 ; 1.662 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18063 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1075 ; 6.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1299 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9551 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1741 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1694 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 9139 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4888 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 732 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 142 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 92 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5359 ; 1.056 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8586 ; 1.877 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3175 ; 3.221 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2945 ; 5.327 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NPY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-03. REMARK 100 THE RCSB ID CODE IS RCSB018093.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-02; 13-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100.; 100. REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97935; 0.97892 REMARK 200 MONOCHROMATOR : SI 111; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2; SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DTCOLLECT, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, NAACETATE, PEG400, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.28750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). THE AUTHORS STATE THAT REMARK 300 THE BIOLOGICAL UNIT IS UNKNOWN.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 270 REMARK 465 PHE A 271 REMARK 465 PHE B 271 REMARK 465 PHE C 271 REMARK 465 PHE D 271
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 270 CG CD CE NZ REMARK 470 HIS D 115 CG ND1 CD2 CE1 NE2 REMARK 470 MET D 215 CG SD CE
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2074 O HOH C 2192 2.13 REMARK 500 NH1 ARG A 223 O HOH A 585 2.16 REMARK 500 OE1 GLN A 7 O HOH A 584 2.17 REMARK 500 O HOH A 318 O HOH A 360 2.17 REMARK 500 OE1 GLN C 242 O HOH C 2274 2.19 REMARK 500 OD1 ASP D 93 O HOH D 2052 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 177 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 44 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 173 -2.14 74.92 REMARK 500 PRO B 65 37.36 -99.17 REMARK 500 HIS B 115 51.91 39.99 REMARK 500 LYS B 145 78.99 -108.17 REMARK 500 ASN B 173 90.92 -38.15 REMARK 500 ASP C 44 77.39 -153.11 REMARK 500 PRO C 65 40.68 -100.71 REMARK 500 LYS C 145 79.59 -106.03 REMARK 500 THR C 269 107.76 -52.81 REMARK 500 PRO D 65 34.45 -99.14 REMARK 500 LYS D 145 75.85 -106.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 172 ASN B 173 -124.99 REMARK 500 GLN B 174 GLN B 175 148.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE B 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE D 2002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE C 2003
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC409 RELATED DB: TARGETDB
DBREF 1NPY A 1 271 UNP P44774 Y607_HAEIN 1 271 DBREF 1NPY B 1 271 UNP P44774 Y607_HAEIN 1 271 DBREF 1NPY C 1 271 UNP P44774 Y607_HAEIN 1 271 DBREF 1NPY D 1 271 UNP P44774 Y607_HAEIN 1 271
SEQRES 1 A 271 MET ILE ASN LYS ASP THR GLN LEU CYS MET SER LEU SER SEQRES 2 A 271 GLY ARG PRO SER ASN PHE GLY THR THR PHE HIS ASN TYR SEQRES 3 A 271 LEU TYR ASP LYS LEU GLY LEU ASN PHE ILE TYR LYS ALA SEQRES 4 A 271 PHE THR THR GLN ASP ILE GLU HIS ALA ILE LYS GLY VAL SEQRES 5 A 271 ARG ALA LEU GLY ILE ARG GLY CYS ALA VAL SER MET PRO SEQRES 6 A 271 PHE LYS GLU THR CYS MET PRO PHE LEU ASP GLU ILE HIS SEQRES 7 A 271 PRO SER ALA GLN ALA ILE GLU SER VAL ASN THR ILE VAL SEQRES 8 A 271 ASN ASP ASN GLY PHE LEU ARG ALA TYR ASN THR ASP TYR SEQRES 9 A 271 ILE ALA ILE VAL LYS LEU ILE GLU LYS TYR HIS LEU ASN SEQRES 10 A 271 LYS ASN ALA LYS VAL ILE VAL HIS GLY SER GLY GLY MET SEQRES 11 A 271 ALA LYS ALA VAL VAL ALA ALA PHE LYS ASN SER GLY PHE SEQRES 12 A 271 GLU LYS LEU LYS ILE TYR ALA ARG ASN VAL LYS THR GLY SEQRES 13 A 271 GLN TYR LEU ALA ALA LEU TYR GLY TYR ALA TYR ILE ASN SEQRES 14 A 271 SER LEU GLU ASN GLN GLN ALA ASP ILE LEU VAL ASN VAL SEQRES 15 A 271 THR SER ILE GLY MET LYS GLY GLY LYS GLU GLU MET ASP SEQRES 16 A 271 LEU ALA PHE PRO LYS ALA PHE ILE ASP ASN ALA SER VAL SEQRES 17 A 271 ALA PHE ASP VAL VAL ALA MET PRO VAL GLU THR PRO PHE SEQRES 18 A 271 ILE ARG TYR ALA GLN ALA ARG GLY LYS GLN THR ILE SER SEQRES 19 A 271 GLY ALA ALA VAL ILE VAL LEU GLN ALA VAL GLU GLN PHE SEQRES 20 A 271 GLU LEU TYR THR HIS GLN ARG PRO SER ASP GLU LEU ILE SEQRES 21 A 271 ALA GLU ALA ALA ALA PHE ALA ARG THR LYS PHE SEQRES 1 B 271 MET ILE ASN LYS ASP THR GLN LEU CYS MET SER LEU SER SEQRES 2 B 271 GLY ARG PRO SER ASN PHE GLY THR THR PHE HIS ASN TYR SEQRES 3 B 271 LEU TYR ASP LYS LEU GLY LEU ASN PHE ILE TYR LYS ALA SEQRES 4 B 271 PHE THR THR GLN ASP ILE GLU HIS ALA ILE LYS GLY VAL SEQRES 5 B 271 ARG ALA LEU GLY ILE ARG GLY CYS ALA VAL SER MET PRO SEQRES 6 B 271 PHE LYS GLU THR CYS MET PRO PHE LEU ASP GLU ILE HIS SEQRES 7 B 271 PRO SER ALA GLN ALA ILE GLU SER VAL ASN THR ILE VAL SEQRES 8 B 271 ASN ASP ASN GLY PHE LEU ARG ALA TYR ASN THR ASP TYR SEQRES 9 B 271 ILE ALA ILE VAL LYS LEU ILE GLU LYS TYR HIS LEU ASN SEQRES 10 B 271 LYS ASN ALA LYS VAL ILE VAL HIS GLY SER GLY GLY MET SEQRES 11 B 271 ALA LYS ALA VAL VAL ALA ALA PHE LYS ASN SER GLY PHE SEQRES 12 B 271 GLU LYS LEU LYS ILE TYR ALA ARG ASN VAL LYS THR GLY SEQRES 13 B 271 GLN TYR LEU ALA ALA LEU TYR GLY TYR ALA TYR ILE ASN SEQRES 14 B 271 SER LEU GLU ASN GLN GLN ALA ASP ILE LEU VAL ASN VAL SEQRES 15 B 271 THR SER ILE GLY MET LYS GLY GLY LYS GLU GLU MET ASP SEQRES 16 B 271 LEU ALA PHE PRO LYS ALA PHE ILE ASP ASN ALA SER VAL SEQRES 17 B 271 ALA PHE ASP VAL VAL ALA MET PRO VAL GLU THR PRO PHE SEQRES 18 B 271 ILE ARG TYR ALA GLN ALA ARG GLY LYS GLN THR ILE SER SEQRES 19 B 271 GLY ALA ALA VAL ILE VAL LEU GLN ALA VAL GLU GLN PHE SEQRES 20 B 271 GLU LEU TYR THR HIS GLN ARG PRO SER ASP GLU LEU ILE SEQRES 21 B 271 ALA GLU ALA ALA ALA PHE ALA ARG THR LYS PHE SEQRES 1 C 271 MET ILE ASN LYS ASP THR GLN LEU CYS MET SER LEU SER SEQRES 2 C 271 GLY ARG PRO SER ASN PHE GLY THR THR PHE HIS ASN TYR SEQRES 3 C 271 LEU TYR ASP LYS LEU GLY LEU ASN PHE ILE TYR LYS ALA SEQRES 4 C 271 PHE THR THR GLN ASP ILE GLU HIS ALA ILE LYS GLY VAL SEQRES 5 C 271 ARG ALA LEU GLY ILE ARG GLY CYS ALA VAL SER MET PRO SEQRES 6 C 271 PHE LYS GLU THR CYS MET PRO PHE LEU ASP GLU ILE HIS SEQRES 7 C 271 PRO SER ALA GLN ALA ILE GLU SER VAL ASN THR ILE VAL SEQRES 8 C 271 ASN ASP ASN GLY PHE LEU ARG ALA TYR ASN THR ASP TYR SEQRES 9 C 271 ILE ALA ILE VAL LYS LEU ILE GLU LYS TYR HIS LEU ASN SEQRES 10 C 271 LYS ASN ALA LYS VAL ILE VAL HIS GLY SER GLY GLY MET SEQRES 11 C 271 ALA LYS ALA VAL VAL ALA ALA PHE LYS ASN SER GLY PHE SEQRES 12 C 271 GLU LYS LEU LYS ILE TYR ALA ARG ASN VAL LYS THR GLY SEQRES 13 C 271 GLN TYR LEU ALA ALA LEU TYR GLY TYR ALA TYR ILE ASN SEQRES 14 C 271 SER LEU GLU ASN GLN GLN ALA ASP ILE LEU VAL ASN VAL SEQRES 15 C 271 THR SER ILE GLY MET LYS GLY GLY LYS GLU GLU MET ASP SEQRES 16 C 271 LEU ALA PHE PRO LYS ALA PHE ILE ASP ASN ALA SER VAL SEQRES 17 C 271 ALA PHE ASP VAL VAL ALA MET PRO VAL GLU THR PRO PHE SEQRES 18 C 271 ILE ARG TYR ALA GLN ALA ARG GLY LYS GLN THR ILE SER SEQRES 19 C 271 GLY ALA ALA VAL ILE VAL LEU GLN ALA VAL GLU GLN PHE SEQRES 20 C 271 GLU LEU TYR THR HIS GLN ARG PRO SER ASP GLU LEU ILE SEQRES 21 C 271 ALA GLU ALA ALA ALA PHE ALA ARG THR LYS PHE SEQRES 1 D 271 MET ILE ASN LYS ASP THR GLN LEU CYS MET SER LEU SER SEQRES 2 D 271 GLY ARG PRO SER ASN PHE GLY THR THR PHE HIS ASN TYR SEQRES 3 D 271 LEU TYR ASP LYS LEU GLY LEU ASN PHE ILE TYR LYS ALA SEQRES 4 D 271 PHE THR THR GLN ASP ILE GLU HIS ALA ILE LYS GLY VAL SEQRES 5 D 271 ARG ALA LEU GLY ILE ARG GLY CYS ALA VAL SER MET PRO SEQRES 6 D 271 PHE LYS GLU THR CYS MET PRO PHE LEU ASP GLU ILE HIS SEQRES 7 D 271 PRO SER ALA GLN ALA ILE GLU SER VAL ASN THR ILE VAL SEQRES 8 D 271 ASN ASP ASN GLY PHE LEU ARG ALA TYR ASN THR ASP TYR SEQRES 9 D 271 ILE ALA ILE VAL LYS LEU ILE GLU LYS TYR HIS LEU ASN SEQRES 10 D 271 LYS ASN ALA LYS VAL ILE VAL HIS GLY SER GLY GLY MET SEQRES 11 D 271 ALA LYS ALA VAL VAL ALA ALA PHE LYS ASN SER GLY PHE SEQRES 12 D 271 GLU LYS LEU LYS ILE TYR ALA ARG ASN VAL LYS THR GLY SEQRES 13 D 271 GLN TYR LEU ALA ALA LEU TYR GLY TYR ALA TYR ILE ASN SEQRES 14 D 271 SER LEU GLU ASN GLN GLN ALA ASP ILE LEU VAL ASN VAL SEQRES 15 D 271 THR SER ILE GLY MET LYS GLY GLY LYS GLU GLU MET ASP SEQRES 16 D 271 LEU ALA PHE PRO LYS ALA PHE ILE ASP ASN ALA SER VAL SEQRES 17 D 271 ALA PHE ASP VAL VAL ALA MET PRO VAL GLU THR PRO PHE SEQRES 18 D 271 ILE ARG TYR ALA GLN ALA ARG GLY LYS GLN THR ILE SER SEQRES 19 D 271 GLY ALA ALA VAL ILE VAL LEU GLN ALA VAL GLU GLN PHE SEQRES 20 D 271 GLU LEU TYR THR HIS GLN ARG PRO SER ASP GLU LEU ILE SEQRES 21 D 271 ALA GLU ALA ALA ALA PHE ALA ARG THR LYS PHE
HET ACE B2001 3 HET ACE D2002 3 HET ACE C2003 3
HETNAM ACE ACETYL GROUP
FORMUL 5 ACE 3(C2 H4 O) FORMUL 8 HOH *1149(H2 O)
HELIX 1 1 ASN A 18 GLY A 32 1 15 HELIX 2 2 ASP A 44 GLY A 56 1 13 HELIX 3 3 CYS A 70 LEU A 74 5 5 HELIX 4 4 HIS A 78 ALA A 83 1 6 HELIX 5 5 ASN A 101 TYR A 114 1 14 HELIX 6 6 MET A 130 SER A 141 1 12 HELIX 7 7 ASN A 152 GLY A 164 1 13 HELIX 8 8 PRO A 199 ALA A 206 1 8 HELIX 9 9 THR A 219 ARG A 228 1 10 HELIX 10 10 SER A 234 HIS A 252 1 19 HELIX 11 11 SER A 256 THR A 269 1 14 HELIX 12 12 ASN B 18 GLY B 32 1 15 HELIX 13 13 ASP B 44 LEU B 55 1 12 HELIX 14 14 CYS B 70 LEU B 74 5 5 HELIX 15 15 HIS B 78 ALA B 83 1 6 HELIX 16 16 ASN B 101 TYR B 114 1 14 HELIX 17 17 MET B 130 SER B 141 1 12 HELIX 18 18 ASN B 152 GLY B 164 1 13 HELIX 19 19 PRO B 199 ASN B 205 1 7 HELIX 20 20 THR B 219 ARG B 228 1 10 HELIX 21 21 GLY B 235 HIS B 252 1 18 HELIX 22 22 SER B 256 THR B 269 1 14 HELIX 23 23 ASN C 18 LEU C 31 1 14 HELIX 24 24 ASP C 44 LEU C 55 1 12 HELIX 25 25 CYS C 70 LEU C 74 5 5 HELIX 26 26 HIS C 78 ALA C 83 1 6 HELIX 27 27 ASN C 101 TYR C 114 1 14 HELIX 28 28 MET C 130 SER C 141 1 12 HELIX 29 29 ASN C 152 TYR C 163 1 12 HELIX 30 30 PRO C 199 ALA C 206 1 8 HELIX 31 31 THR C 219 ARG C 228 1 10 HELIX 32 32 GLY C 235 HIS C 252 1 18 HELIX 33 33 SER C 256 THR C 269 1 14 HELIX 34 34 ASN D 18 GLY D 32 1 15 HELIX 35 35 ASP D 44 GLY D 56 1 13 HELIX 36 36 CYS D 70 LEU D 74 5 5 HELIX 37 37 HIS D 78 ALA D 83 1 6 HELIX 38 38 ASN D 101 TYR D 114 1 14 HELIX 39 39 MET D 130 SER D 141 1 12 HELIX 40 40 ASN D 152 GLY D 164 1 13 HELIX 41 41 PRO D 199 ALA D 206 1 8 HELIX 42 42 THR D 219 ARG D 228 1 10 HELIX 43 43 SER D 234 HIS D 252 1 19 HELIX 44 44 SER D 256 LYS D 270 1 15
SHEET 1 A 6 PHE A 35 PHE A 40 0 SHEET 2 A 6 GLN A 7 LEU A 12 1 N CYS A 9 O ILE A 36 SHEET 3 A 6 GLY A 59 VAL A 62 1 O ALA A 61 N MET A 10 SHEET 4 A 6 THR A 89 ASP A 93 -1 O ILE A 90 N CYS A 60 SHEET 5 A 6 PHE A 96 TYR A 100 -1 O ARG A 98 N VAL A 91 SHEET 6 A 6 GLU A 76 ILE A 77 1 N GLU A 76 O ALA A 99 SHEET 1 B 6 ALA A 166 ILE A 168 0 SHEET 2 B 6 LEU A 146 TYR A 149 1 N ILE A 148 O ILE A 168 SHEET 3 B 6 VAL A 122 HIS A 125 1 N VAL A 124 O TYR A 149 SHEET 4 B 6 ILE A 178 ASN A 181 1 O VAL A 180 N HIS A 125 SHEET 5 B 6 VAL A 208 ASP A 211 1 O PHE A 210 N LEU A 179 SHEET 6 B 6 GLN A 231 ILE A 233 1 O GLN A 231 N ALA A 209 SHEET 1 C 6 PHE B 35 PHE B 40 0 SHEET 2 C 6 GLN B 7 LEU B 12 1 N CYS B 9 O ILE B 36 SHEET 3 C 6 GLY B 59 VAL B 62 1 O ALA B 61 N MET B 10 SHEET 4 C 6 THR B 89 ASP B 93 -1 O ILE B 90 N CYS B 60 SHEET 5 C 6 PHE B 96 TYR B 100 -1 O ARG B 98 N VAL B 91 SHEET 6 C 6 GLU B 76 ILE B 77 1 N GLU B 76 O ALA B 99 SHEET 1 D 6 ALA B 166 ILE B 168 0 SHEET 2 D 6 LEU B 146 TYR B 149 1 N ILE B 148 O ILE B 168 SHEET 3 D 6 VAL B 122 HIS B 125 1 N VAL B 124 O TYR B 149 SHEET 4 D 6 ILE B 178 ASN B 181 1 O VAL B 180 N HIS B 125 SHEET 5 D 6 VAL B 208 ASP B 211 1 O PHE B 210 N LEU B 179 SHEET 6 D 6 GLN B 231 SER B 234 1 O ILE B 233 N ASP B 211 SHEET 1 E 6 PHE C 35 PHE C 40 0 SHEET 2 E 6 GLN C 7 LEU C 12 1 N SER C 11 O PHE C 40 SHEET 3 E 6 GLY C 59 VAL C 62 1 O ALA C 61 N MET C 10 SHEET 4 E 6 THR C 89 ASP C 93 -1 O ILE C 90 N CYS C 60 SHEET 5 E 6 PHE C 96 TYR C 100 -1 O ARG C 98 N VAL C 91 SHEET 6 E 6 GLU C 76 ILE C 77 1 N GLU C 76 O ALA C 99 SHEET 1 F 6 ALA C 166 ILE C 168 0 SHEET 2 F 6 LEU C 146 TYR C 149 1 N ILE C 148 O ILE C 168 SHEET 3 F 6 VAL C 122 HIS C 125 1 N VAL C 124 O TYR C 149 SHEET 4 F 6 ILE C 178 ASN C 181 1 O VAL C 180 N HIS C 125 SHEET 5 F 6 VAL C 208 ASP C 211 1 O PHE C 210 N LEU C 179 SHEET 6 F 6 GLN C 231 SER C 234 1 O GLN C 231 N ALA C 209 SHEET 1 G 6 PHE D 35 PHE D 40 0 SHEET 2 G 6 GLN D 7 LEU D 12 1 N CYS D 9 O ILE D 36 SHEET 3 G 6 GLY D 59 VAL D 62 1 O ALA D 61 N MET D 10 SHEET 4 G 6 THR D 89 ASP D 93 -1 O ILE D 90 N CYS D 60 SHEET 5 G 6 PHE D 96 TYR D 100 -1 O ARG D 98 N VAL D 91 SHEET 6 G 6 GLU D 76 ILE D 77 1 N GLU D 76 O ALA D 99 SHEET 1 H 6 ALA D 166 ILE D 168 0 SHEET 2 H 6 LEU D 146 TYR D 149 1 N ILE D 148 O ILE D 168 SHEET 3 H 6 VAL D 122 HIS D 125 1 N VAL D 124 O TYR D 149 SHEET 4 H 6 ILE D 178 ASN D 181 1 O VAL D 180 N HIS D 125 SHEET 5 H 6 VAL D 208 ASP D 211 1 O PHE D 210 N LEU D 179 SHEET 6 H 6 GLN D 231 ILE D 233 1 O GLN D 231 N ALA D 209
CISPEP 1 MET A 64 PRO A 65 0 -0.42 CISPEP 2 MET A 215 PRO A 216 0 -2.92 CISPEP 3 MET B 64 PRO B 65 0 3.14 CISPEP 4 MET B 215 PRO B 216 0 -3.21 CISPEP 5 MET C 64 PRO C 65 0 0.70 CISPEP 6 MET C 215 PRO C 216 0 -1.14 CISPEP 7 MET D 64 PRO D 65 0 1.78 CISPEP 8 MET D 215 PRO D 216 0 9.08
SITE 1 AC1 4 HIS B 78 SER B 80 HOH B2150 HOH B2192 SITE 1 AC2 5 SER D 11 GLY D 20 TYR D 37 HOH D2005 SITE 2 AC2 5 HOH D2099 SITE 1 AC3 5 ARG C 58 VAL C 91 ASP C 93 HOH C2005 SITE 2 AC3 5 HOH C2052
CRYST1 90.578 66.575 96.916 90.00 109.56 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011040 0.000000 0.003922 0.00000
SCALE2 0.000000 0.015021 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010950 0.00000