10 20 30 40 50 60 70 80 1NPD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-JAN-03 1NPD
TITLE X-RAY STRUCTURE OF SHIKIMATE DEHYDROGENASE COMPLEXED WITH TITLE 2 NAD+ FROM E.COLI (YDIB) NORTHEAST STRUCTURAL GENOMICS TITLE 3 RESEARCH CONSORTIUM (NESG) TARGET ER24
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE COMPND 3 PROTEIN YDIB; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.1.1.25; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMGK
KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR J.BENACH,A.P.KUZIN,I.LEE,B.ROST,Y.CHIANG,T.B.ACTON, AUTHOR 2 G.T.MONTELIONE,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG)
REVDAT 5 24-FEB-09 1NPD 1 VERSN REVDAT 4 25-JAN-05 1NPD 1 AUTHOR KEYWDS REMARK REVDAT 3 14-OCT-03 1NPD 1 JRNL REVDAT 2 18-MAR-03 1NPD 1 JRNL REVDAT 1 28-JAN-03 1NPD 0
JRNL AUTH J.BENACH,I.LEE,W.EDSTROM,A.P.KUZIN,Y.CHIANG, JRNL AUTH 2 T.B.ACTON,G.T.MONTELIONE,J.F.HUNT JRNL TITL THE 2.3-A CRYSTAL STRUCTURE OF THE SHIKIMATE JRNL TITL 2 5-DEHYDROGENASE ORTHOLOGUE YDIB FROM ESCHERICHIA JRNL TITL 3 COLI SUGGESTS A NOVEL CATALYTIC ENVIRONMENT FOR AN JRNL TITL 4 NAD-DEPENDENT DEHYDROGENASE JRNL REF J.BIOL.CHEM. V. 278 19176 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12624088 JRNL DOI 10.1074/JBC.M301348200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1761858.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 24734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3716 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 206 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : -1.15000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : 4.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.93 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.500 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 44.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NPD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-03. REMARK 100 THE RCSB ID CODE IS RCSB018078.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979, 0.9787, 0.92 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.930 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MULTIPLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM ACETATE, 100MM TRI- REMARK 280 SODIUM CITRATE DIHYDRATE, 25% PEG 6000, PH 5.2, TEMPERATURE REMARK 280 294K, VAPOR DIFFUSION, HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.26067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.52133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.26067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.52133 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 288
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 -24.11 -156.62 REMARK 500 ARG A 18 -8.56 -54.53 REMARK 500 ALA A 132 17.84 -145.44 REMARK 500 ARG A 156 -176.29 -67.62 REMARK 500 ASP A 158 -166.79 -128.44 REMARK 500 LEU A 184 -7.73 -59.42 REMARK 500 SER A 196 36.42 -95.63 REMARK 500 LEU A 211 40.78 -107.29 REMARK 500 GLU A 212 -75.03 -55.27 REMARK 500 ASN A 213 31.70 -65.78 REMARK 500 LEU A 222 -18.48 -46.12 REMARK 500 ASN A 235 -76.55 -50.57 REMARK 500 ALA A 245 -72.14 -61.83 REMARK 500 GLN A 246 13.90 -65.55 REMARK 500 ASP A 254 174.53 -57.33 REMARK 500 ILE B 17 -7.16 -162.83 REMARK 500 ASP B 45 -168.80 -113.37 REMARK 500 ALA B 132 8.39 -150.68 REMARK 500 ASP B 158 -155.69 -121.00 REMARK 500 LEU B 211 48.63 -79.39 REMARK 500 GLN B 247 22.78 -70.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 300
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AROE RELATED DB: NCBI REMARK 900 NADP-DEPENDENT SHIKIMATE 5-DEHYDROGENASE REMARK 900 RELATED ID: ER24 RELATED DB: TARGETDB
DBREF 1NPD A 1 288 UNP P0A6D5 YDIB_ECOLI 1 288 DBREF 1NPD B 1 288 UNP P0A6D5 YDIB_ECOLI 1 288
SEQADV 1NPD MSE A 1 UNP P0A6D5 MET 1 MODIFIED RESIDUE SEQADV 1NPD MSE A 13 UNP P0A6D5 MET 13 MODIFIED RESIDUE SEQADV 1NPD MSE A 25 UNP P0A6D5 MET 25 MODIFIED RESIDUE SEQADV 1NPD MSE A 40 UNP P0A6D5 MET 40 MODIFIED RESIDUE SEQADV 1NPD MSE A 61 UNP P0A6D5 MET 61 MODIFIED RESIDUE SEQADV 1NPD MSE A 68 UNP P0A6D5 MET 68 MODIFIED RESIDUE SEQADV 1NPD MSE A 127 UNP P0A6D5 MET 127 MODIFIED RESIDUE SEQADV 1NPD MSE A 208 UNP P0A6D5 MET 208 MODIFIED RESIDUE SEQADV 1NPD MSE A 238 UNP P0A6D5 MET 238 MODIFIED RESIDUE SEQADV 1NPD MSE A 258 UNP P0A6D5 MET 258 MODIFIED RESIDUE SEQADV 1NPD MSE A 284 UNP P0A6D5 MET 284 MODIFIED RESIDUE SEQADV 1NPD MSE B 1 UNP P0A6D5 MET 1 MODIFIED RESIDUE SEQADV 1NPD MSE B 13 UNP P0A6D5 MET 13 MODIFIED RESIDUE SEQADV 1NPD MSE B 25 UNP P0A6D5 MET 25 MODIFIED RESIDUE SEQADV 1NPD MSE B 40 UNP P0A6D5 MET 40 MODIFIED RESIDUE SEQADV 1NPD MSE B 61 UNP P0A6D5 MET 61 MODIFIED RESIDUE SEQADV 1NPD MSE B 68 UNP P0A6D5 MET 68 MODIFIED RESIDUE SEQADV 1NPD MSE B 127 UNP P0A6D5 MET 127 MODIFIED RESIDUE SEQADV 1NPD MSE B 208 UNP P0A6D5 MET 208 MODIFIED RESIDUE SEQADV 1NPD MSE B 238 UNP P0A6D5 MET 238 MODIFIED RESIDUE SEQADV 1NPD MSE B 258 UNP P0A6D5 MET 258 MODIFIED RESIDUE SEQADV 1NPD MSE B 284 UNP P0A6D5 MET 284 MODIFIED RESIDUE
SEQRES 1 A 288 MSE ASP VAL THR ALA LYS TYR GLU LEU ILE GLY LEU MSE SEQRES 2 A 288 ALA TYR PRO ILE ARG HIS SER LEU SER PRO GLU MSE GLN SEQRES 3 A 288 ASN LYS ALA LEU GLU LYS ALA GLY LEU PRO PHE THR TYR SEQRES 4 A 288 MSE ALA PHE GLU VAL ASP ASN ASP SER PHE PRO GLY ALA SEQRES 5 A 288 ILE GLU GLY LEU LYS ALA LEU LYS MSE ARG GLY THR GLY SEQRES 6 A 288 VAL SER MSE PRO ASN LYS GLN LEU ALA CYS GLU TYR VAL SEQRES 7 A 288 ASP GLU LEU THR PRO ALA ALA LYS LEU VAL GLY ALA ILE SEQRES 8 A 288 ASN THR ILE VAL ASN ASP ASP GLY TYR LEU ARG GLY TYR SEQRES 9 A 288 ASN THR ASP GLY THR GLY HIS ILE ARG ALA ILE LYS GLU SEQRES 10 A 288 SER GLY PHE ASP ILE LYS GLY LYS THR MSE VAL LEU LEU SEQRES 11 A 288 GLY ALA GLY GLY ALA SER THR ALA ILE GLY ALA GLN GLY SEQRES 12 A 288 ALA ILE GLU GLY LEU LYS GLU ILE LYS LEU PHE ASN ARG SEQRES 13 A 288 ARG ASP GLU PHE PHE ASP LYS ALA LEU ALA PHE ALA GLN SEQRES 14 A 288 ARG VAL ASN GLU ASN THR ASP CYS VAL VAL THR VAL THR SEQRES 15 A 288 ASP LEU ALA ASP GLN GLN ALA PHE ALA GLU ALA LEU ALA SEQRES 16 A 288 SER ALA ASP ILE LEU THR ASN GLY THR LYS VAL GLY MSE SEQRES 17 A 288 LYS PRO LEU GLU ASN GLU SER LEU VAL ASN ASP ILE SER SEQRES 18 A 288 LEU LEU HIS PRO GLY LEU LEU VAL THR GLU CYS VAL TYR SEQRES 19 A 288 ASN PRO HIS MSE THR LYS LEU LEU GLN GLN ALA GLN GLN SEQRES 20 A 288 ALA GLY CYS LYS THR ILE ASP GLY TYR GLY MSE LEU LEU SEQRES 21 A 288 TRP GLN GLY ALA GLU GLN PHE THR LEU TRP THR GLY LYS SEQRES 22 A 288 ASP PHE PRO LEU GLU TYR VAL LYS GLN VAL MSE GLY PHE SEQRES 23 A 288 GLY ALA SEQRES 1 B 288 MSE ASP VAL THR ALA LYS TYR GLU LEU ILE GLY LEU MSE SEQRES 2 B 288 ALA TYR PRO ILE ARG HIS SER LEU SER PRO GLU MSE GLN SEQRES 3 B 288 ASN LYS ALA LEU GLU LYS ALA GLY LEU PRO PHE THR TYR SEQRES 4 B 288 MSE ALA PHE GLU VAL ASP ASN ASP SER PHE PRO GLY ALA SEQRES 5 B 288 ILE GLU GLY LEU LYS ALA LEU LYS MSE ARG GLY THR GLY SEQRES 6 B 288 VAL SER MSE PRO ASN LYS GLN LEU ALA CYS GLU TYR VAL SEQRES 7 B 288 ASP GLU LEU THR PRO ALA ALA LYS LEU VAL GLY ALA ILE SEQRES 8 B 288 ASN THR ILE VAL ASN ASP ASP GLY TYR LEU ARG GLY TYR SEQRES 9 B 288 ASN THR ASP GLY THR GLY HIS ILE ARG ALA ILE LYS GLU SEQRES 10 B 288 SER GLY PHE ASP ILE LYS GLY LYS THR MSE VAL LEU LEU SEQRES 11 B 288 GLY ALA GLY GLY ALA SER THR ALA ILE GLY ALA GLN GLY SEQRES 12 B 288 ALA ILE GLU GLY LEU LYS GLU ILE LYS LEU PHE ASN ARG SEQRES 13 B 288 ARG ASP GLU PHE PHE ASP LYS ALA LEU ALA PHE ALA GLN SEQRES 14 B 288 ARG VAL ASN GLU ASN THR ASP CYS VAL VAL THR VAL THR SEQRES 15 B 288 ASP LEU ALA ASP GLN GLN ALA PHE ALA GLU ALA LEU ALA SEQRES 16 B 288 SER ALA ASP ILE LEU THR ASN GLY THR LYS VAL GLY MSE SEQRES 17 B 288 LYS PRO LEU GLU ASN GLU SER LEU VAL ASN ASP ILE SER SEQRES 18 B 288 LEU LEU HIS PRO GLY LEU LEU VAL THR GLU CYS VAL TYR SEQRES 19 B 288 ASN PRO HIS MSE THR LYS LEU LEU GLN GLN ALA GLN GLN SEQRES 20 B 288 ALA GLY CYS LYS THR ILE ASP GLY TYR GLY MSE LEU LEU SEQRES 21 B 288 TRP GLN GLY ALA GLU GLN PHE THR LEU TRP THR GLY LYS SEQRES 22 B 288 ASP PHE PRO LEU GLU TYR VAL LYS GLN VAL MSE GLY PHE SEQRES 23 B 288 GLY ALA
MODRES 1NPD MSE A 1 MET SELENOMETHIONINE MODRES 1NPD MSE A 13 MET SELENOMETHIONINE MODRES 1NPD MSE A 25 MET SELENOMETHIONINE MODRES 1NPD MSE A 40 MET SELENOMETHIONINE MODRES 1NPD MSE A 61 MET SELENOMETHIONINE MODRES 1NPD MSE A 68 MET SELENOMETHIONINE MODRES 1NPD MSE A 127 MET SELENOMETHIONINE MODRES 1NPD MSE A 208 MET SELENOMETHIONINE MODRES 1NPD MSE A 238 MET SELENOMETHIONINE MODRES 1NPD MSE A 258 MET SELENOMETHIONINE MODRES 1NPD MSE A 284 MET SELENOMETHIONINE MODRES 1NPD MSE B 1 MET SELENOMETHIONINE MODRES 1NPD MSE B 13 MET SELENOMETHIONINE MODRES 1NPD MSE B 25 MET SELENOMETHIONINE MODRES 1NPD MSE B 40 MET SELENOMETHIONINE MODRES 1NPD MSE B 61 MET SELENOMETHIONINE MODRES 1NPD MSE B 68 MET SELENOMETHIONINE MODRES 1NPD MSE B 127 MET SELENOMETHIONINE MODRES 1NPD MSE B 208 MET SELENOMETHIONINE MODRES 1NPD MSE B 238 MET SELENOMETHIONINE MODRES 1NPD MSE B 258 MET SELENOMETHIONINE MODRES 1NPD MSE B 284 MET SELENOMETHIONINE
HET MSE A 1 8 HET MSE A 13 8 HET MSE A 25 8 HET MSE A 40 8 HET MSE A 61 8 HET MSE A 68 8 HET MSE A 127 8 HET MSE A 208 8 HET MSE A 238 8 HET MSE A 258 8 HET MSE A 284 8 HET MSE B 1 8 HET MSE B 13 8 HET MSE B 25 8 HET MSE B 40 8 HET MSE B 61 8 HET MSE B 68 8 HET MSE B 127 8 HET MSE B 208 8 HET MSE B 238 8 HET MSE B 258 8 HET MSE B 284 8 HET NAD A 300 44 HET NAD B 300 44
HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *319(H2 O)
HELIX 1 1 LEU A 21 ALA A 33 1 13 HELIX 2 2 SER A 48 LEU A 59 1 12 HELIX 3 3 GLN A 72 VAL A 78 5 7 HELIX 4 4 THR A 82 GLY A 89 1 8 HELIX 5 5 ASN A 105 SER A 118 1 14 HELIX 6 6 GLY A 133 GLU A 146 1 14 HELIX 7 7 ASP A 158 THR A 175 1 18 HELIX 8 8 PHE A 190 ALA A 195 1 6 HELIX 9 9 ASP A 219 LEU A 223 5 5 HELIX 10 10 THR A 239 GLN A 246 1 8 HELIX 11 11 ASP A 254 GLY A 272 1 19 HELIX 12 12 PRO A 276 MSE A 284 1 9 HELIX 13 13 LEU B 21 ALA B 33 1 13 HELIX 14 14 SER B 48 LEU B 59 1 12 HELIX 15 15 GLN B 72 VAL B 78 5 7 HELIX 16 16 THR B 82 GLY B 89 1 8 HELIX 17 17 ASN B 105 SER B 118 1 14 HELIX 18 18 GLY B 133 GLU B 146 1 14 HELIX 19 19 PHE B 160 THR B 175 1 16 HELIX 20 20 ASP B 186 SER B 196 1 11 HELIX 21 21 ASP B 219 LEU B 223 5 5 HELIX 22 22 THR B 239 GLN B 247 1 9 HELIX 23 23 ASP B 254 GLY B 272 1 19 HELIX 24 24 PRO B 276 MSE B 284 1 9
SHEET 1 A 6 PHE A 37 GLU A 43 0 SHEET 2 A 6 GLU A 8 ALA A 14 1 N LEU A 12 O PHE A 42 SHEET 3 A 6 GLY A 63 VAL A 66 1 O GLY A 65 N GLY A 11 SHEET 4 A 6 THR A 93 ASP A 97 -1 O ILE A 94 N THR A 64 SHEET 5 A 6 TYR A 100 TYR A 104 -1 O TYR A 100 N ASP A 97 SHEET 6 A 6 GLU A 80 LEU A 81 1 N GLU A 80 O GLY A 103 SHEET 1 B 6 VAL A 178 ASP A 183 0 SHEET 2 B 6 GLU A 150 ASN A 155 1 N LEU A 153 O THR A 182 SHEET 3 B 6 THR A 126 LEU A 130 1 N LEU A 129 O PHE A 154 SHEET 4 B 6 ILE A 199 ASN A 202 1 O THR A 201 N LEU A 130 SHEET 5 B 6 LEU A 228 GLU A 231 1 O LEU A 228 N LEU A 200 SHEET 6 B 6 THR A 252 ILE A 253 1 O ILE A 253 N VAL A 229 SHEET 1 C 6 GLU B 80 LEU B 81 0 SHEET 2 C 6 TYR B 100 TYR B 104 1 O GLY B 103 N GLU B 80 SHEET 3 C 6 THR B 93 ASP B 97 -1 N ASP B 97 O TYR B 100 SHEET 4 C 6 GLY B 63 VAL B 66 -1 N THR B 64 O ILE B 94 SHEET 5 C 6 GLU B 8 ALA B 14 1 N GLY B 11 O GLY B 65 SHEET 6 C 6 PHE B 37 TYR B 39 1 O THR B 38 N ILE B 10 SHEET 1 D 6 GLU B 80 LEU B 81 0 SHEET 2 D 6 TYR B 100 TYR B 104 1 O GLY B 103 N GLU B 80 SHEET 3 D 6 THR B 93 ASP B 97 -1 N ASP B 97 O TYR B 100 SHEET 4 D 6 GLY B 63 VAL B 66 -1 N THR B 64 O ILE B 94 SHEET 5 D 6 GLU B 8 ALA B 14 1 N GLY B 11 O GLY B 65 SHEET 6 D 6 PHE B 42 GLU B 43 1 O PHE B 42 N ALA B 14 SHEET 1 E 6 VAL B 178 ASP B 183 0 SHEET 2 E 6 GLU B 150 ASN B 155 1 N LEU B 153 O THR B 182 SHEET 3 E 6 THR B 126 LEU B 130 1 N MSE B 127 O LYS B 152 SHEET 4 E 6 ILE B 199 ASN B 202 1 O ILE B 199 N VAL B 128 SHEET 5 E 6 LEU B 228 GLU B 231 1 O LEU B 228 N LEU B 200 SHEET 6 E 6 LYS B 251 ILE B 253 1 O LYS B 251 N VAL B 229
LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C LEU A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ALA A 14 1555 1555 1.32 LINK C GLU A 24 N MSE A 25 1555 1555 1.32 LINK C MSE A 25 N GLN A 26 1555 1555 1.33 LINK C TYR A 39 N MSE A 40 1555 1555 1.32 LINK C MSE A 40 N ALA A 41 1555 1555 1.33 LINK C LYS A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N ARG A 62 1555 1555 1.33 LINK C SER A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N PRO A 69 1555 1555 1.34 LINK C THR A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N VAL A 128 1555 1555 1.33 LINK C GLY A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N LYS A 209 1555 1555 1.33 LINK C HIS A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N THR A 239 1555 1555 1.33 LINK C GLY A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N LEU A 259 1555 1555 1.33 LINK C VAL A 283 N MSE A 284 1555 1555 1.33 LINK C MSE A 284 N GLY A 285 1555 1555 1.33 LINK C MSE B 1 N ASP B 2 1555 1555 1.34 LINK C LEU B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N ALA B 14 1555 1555 1.33 LINK C GLU B 24 N MSE B 25 1555 1555 1.32 LINK C MSE B 25 N GLN B 26 1555 1555 1.33 LINK C TYR B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N ALA B 41 1555 1555 1.33 LINK C LYS B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N ARG B 62 1555 1555 1.33 LINK C SER B 67 N MSE B 68 1555 1555 1.33 LINK C MSE B 68 N PRO B 69 1555 1555 1.34 LINK C THR B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N VAL B 128 1555 1555 1.33 LINK C GLY B 207 N MSE B 208 1555 1555 1.33 LINK C MSE B 208 N LYS B 209 1555 1555 1.33 LINK C HIS B 237 N MSE B 238 1555 1555 1.33 LINK C MSE B 238 N THR B 239 1555 1555 1.32 LINK C GLY B 257 N MSE B 258 1555 1555 1.33 LINK C MSE B 258 N LEU B 259 1555 1555 1.33 LINK C VAL B 283 N MSE B 284 1555 1555 1.33 LINK C MSE B 284 N GLY B 285 1555 1555 1.33
CISPEP 1 TYR A 15 PRO A 16 0 -0.12 CISPEP 2 MSE A 68 PRO A 69 0 -0.97 CISPEP 3 LYS A 209 PRO A 210 0 -0.13 CISPEP 4 TYR B 15 PRO B 16 0 -0.44 CISPEP 5 MSE B 68 PRO B 69 0 0.54 CISPEP 6 LYS B 209 PRO B 210 0 -0.20 CISPEP 7 ASN B 235 PRO B 236 0 0.32
SITE 1 AC1 26 ASP A 107 GLY A 131 ALA A 132 GLY A 133 SITE 2 AC1 26 GLY A 134 ALA A 135 ASN A 155 ARG A 156 SITE 3 AC1 26 ASP A 158 PHE A 160 LEU A 184 GLY A 203 SITE 4 AC1 26 THR A 204 LYS A 205 VAL A 206 MSE A 208 SITE 5 AC1 26 CYS A 232 VAL A 233 TYR A 234 ASN A 235 SITE 6 AC1 26 GLY A 255 MSE A 258 LEU A 259 HOH A3013 SITE 7 AC1 26 HOH A3320 HOH A3321 SITE 1 AC2 24 ASP B 107 ALA B 132 GLY B 133 GLY B 134 SITE 2 AC2 24 ALA B 135 ASN B 155 ARG B 156 ASP B 158 SITE 3 AC2 24 PHE B 160 GLY B 203 THR B 204 LYS B 205 SITE 4 AC2 24 VAL B 206 MSE B 208 CYS B 232 TYR B 234 SITE 5 AC2 24 GLY B 255 MSE B 258 LEU B 259 HOH B3014 SITE 6 AC2 24 HOH B3106 HOH B3111 HOH B3127 HOH B3271
CRYST1 157.185 157.185 39.782 90.00 90.00 120.00 P 64 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006362 0.003673 0.000000 0.00000
SCALE2 0.000000 0.007346 0.000000 0.00000
SCALE3 0.000000 0.000000 0.025137 0.00000