10 20 30 40 50 60 70 80 1NP8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 17-JAN-03 1NP8
TITLE 18-K C-TERMINALLY TRUNUCATED SMALL SUBUNIT OF CALPAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-DEPENDENT PROTEASE, SMALL SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 87-245; COMPND 5 SYNONYM: CALPAIN REGULATORY SUBUNIT, CALCIUM-ACTIVATED COMPND 6 NEUTRAL PROTEINASE, CANP, FRAGMENT; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CAPNS1 OR CAPN4 OR CSS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS DIMER IN SOLUTION, OLIGOMER IN CRYSTAL, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.K.LEINALA,J.S.ARTHUR,P.GROCHULSKI,P.L.DAVIES,J.S.ELCE, AUTHOR 2 Z.JIA
REVDAT 2 24-FEB-09 1NP8 1 VERSN REVDAT 1 18-NOV-03 1NP8 0
JRNL AUTH E.K.LEINALA,J.S.ARTHUR,P.GROCHULSKI,P.L.DAVIES, JRNL AUTH 2 J.S.ELCE,Z.JIA JRNL TITL A SECOND BINDING SITE REVEALED BY C-TERMINAL JRNL TITL 2 TRUNCATION OF CALPAIN SMALL SUBUNIT, A JRNL TITL 3 PENTA-EF-HAND PROTEIN JRNL REF PROTEINS: V. 53 649 2003 JRNL REF 2 STRUCT.,FUNCT.,GENET. JRNL REFN ISSN 0887-3585 JRNL PMID 14579356 JRNL DOI 10.1002/PROT.10453
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 19747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2873 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 307 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.18000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.510 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.040 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 49.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PROTEIN.LINK REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NP8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-03. REMARK 100 THE RCSB ID CODE IS RCSB018074.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, CADMIUM CHLORIDE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 ARG A 160 REMARK 465 SER A 161 REMARK 465 LEU A 162 REMARK 465 ASP A 163 REMARK 465 ASN B 505 REMARK 465 ILE B 506 REMARK 465 GLU B 507 REMARK 465 ALA B 508 REMARK 465 ASN B 509 REMARK 465 GLU B 510 REMARK 465 ARG B 660 REMARK 465 SER B 661 REMARK 465 LEU B 662 REMARK 465 ASP B 663
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 135 -165.03 -76.04 REMARK 500 ILE B 629 -65.33 -123.75 REMARK 500 ASP B 635 -169.97 -75.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 789 DISTANCE = 5.10 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 700 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 OE2 REMARK 620 2 ASP A 68 OD1 91.7 REMARK 620 3 LYS A 74 O 133.1 85.0 REMARK 620 4 GLU A 79 OE1 48.0 102.2 87.0 REMARK 620 5 HOH A 778 O 88.6 165.4 105.3 88.7 REMARK 620 6 ASP A 70 OD1 70.4 82.0 153.5 118.2 84.4 REMARK 620 7 THR A 72 OG1 156.8 90.7 70.0 152.7 83.5 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 774 O REMARK 620 2 ASP A 100 OD2 92.2 REMARK 620 3 HOH A 769 O 94.8 100.8 REMARK 620 4 HOH A 771 O 170.2 87.4 94.9 REMARK 620 5 GLU B 615 OE1 89.8 100.5 158.0 80.6 REMARK 620 6 GLU B 615 OE2 85.9 154.0 105.2 90.1 53.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 702 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE2 REMARK 620 2 HOH A 720 O 102.7 REMARK 620 3 ASP A 100 OD1 73.0 90.3 REMARK 620 4 GLU A 109 OE1 50.5 84.2 119.8 REMARK 620 5 ASP A 98 OD1 91.5 160.8 81.6 114.9 REMARK 620 6 SER A 102 OG 157.7 78.7 84.8 150.2 83.3 REMARK 620 7 THR A 104 O 126.7 99.0 154.6 84.8 82.1 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 703 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 OD1 REMARK 620 2 GLU A 30 O 76.0 REMARK 620 3 GLU A 35 OE1 150.1 75.6 REMARK 620 4 HOH A 772 O 90.1 97.8 84.4 REMARK 620 5 ALA A 25 O 82.3 89.2 106.6 168.2 REMARK 620 6 GLU A 35 OE2 155.4 127.9 54.4 91.8 91.3 REMARK 620 7 HOH A 726 O 70.4 146.2 138.2 86.6 82.4 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 704 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 ASP A 141 OD2 54.2 REMARK 620 3 ASN A 144 OD1 123.7 73.1 REMARK 620 4 HOH A 729 O 78.3 90.0 84.1 REMARK 620 5 HOH A 773 O 159.3 142.1 69.1 87.9 REMARK 620 6 ASP A 53 OD1 84.2 131.9 152.0 105.3 84.8 REMARK 620 7 ASP A 143 OD1 73.6 72.3 110.2 151.9 119.6 73.7 REMARK 620 8 ASP A 143 OD2 119.4 94.3 79.0 160.5 77.0 85.8 46.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 705 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD1 REMARK 620 2 ASP A 27 OD2 45.2 REMARK 620 3 HOH A 776 O 152.7 148.2 REMARK 620 4 HOH A 768 O 101.1 95.9 99.9 REMARK 620 5 GLU A 115 OE1 113.7 71.9 77.4 104.4 REMARK 620 6 GLU A 115 OE2 87.0 77.9 78.5 161.4 57.0 REMARK 620 7 ASP B 600 OD2 83.1 128.2 77.1 96.8 149.1 100.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 711 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 ASP A 49 OD1 110.7 REMARK 620 3 HOH A 777 O 86.1 96.2 REMARK 620 4 ASP A 49 OD2 165.9 55.3 96.2 REMARK 620 5 LYS B 519 NZ 102.0 145.1 98.1 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 707 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 568 OD1 REMARK 620 2 ASP B 570 OD1 79.1 REMARK 620 3 THR B 572 OG1 90.0 84.4 REMARK 620 4 LYS B 574 O 87.3 155.0 74.6 REMARK 620 5 GLU B 579 OE2 88.4 69.8 153.9 131.2 REMARK 620 6 HOH B 112 O 172.1 94.7 84.5 96.6 94.1 REMARK 620 7 GLU B 579 OE1 110.4 112.7 155.1 91.6 45.5 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 708 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 600 OD1 REMARK 620 2 SER B 602 OG 80.0 REMARK 620 3 THR B 604 O 151.6 78.7 REMARK 620 4 GLU B 609 OE1 123.1 151.9 83.2 REMARK 620 5 GLU B 609 OE2 71.6 151.6 128.6 53.5 REMARK 620 6 HOH B 138 O 94.5 80.5 100.3 81.7 99.4 REMARK 620 7 ASP B 598 OD1 81.8 83.3 77.2 113.6 94.5 163.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 709 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 535 OE1 REMARK 620 2 HOH B 142 O 91.2 REMARK 620 3 ALA B 525 O 98.9 162.9 REMARK 620 4 GLU B 535 OE2 54.2 94.4 80.6 REMARK 620 5 ASP B 528 OD1 145.2 92.2 87.4 159.3 REMARK 620 6 HOH B 186 O 141.1 83.7 79.8 87.6 73.6 REMARK 620 7 GLU B 530 O 72.2 107.6 88.7 122.3 73.8 145.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 710 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 119 O REMARK 620 2 ASP B 553 OD1 110.9 REMARK 620 3 ASP B 641 OD2 94.7 130.5 REMARK 620 4 ASP B 643 OD1 156.3 66.8 73.0 REMARK 620 5 ASP B 643 OD2 152.2 81.7 94.8 51.1 REMARK 620 6 ASN B 644 OD1 85.1 145.8 74.7 110.0 72.4 REMARK 620 7 ASP B 641 OD1 80.6 90.6 51.6 75.9 125.1 122.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 712 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 547 ND1 REMARK 620 2 ASP B 549 OD1 148.3 REMARK 620 3 ASP B 549 OD2 105.6 50.7 REMARK 620 4 LYS B 595 NZ 95.0 103.8 88.3 REMARK 620 5 HOH A 770 O 104.0 57.1 81.9 160.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 713 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 624 ND1 REMARK 620 2 HOH B 148 O 112.5 REMARK 620 3 HOH B 198 O 111.4 102.2 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 700 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 701 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 702 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 703 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 704 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 705 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 707 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 708 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 709 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 710 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 711 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 712 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 713
DBREF 1NP8 A 5 163 UNP Q64537 CPNS1_RAT 87 245 DBREF 1NP8 B 505 663 UNP Q64537 CPNS1_RAT 87 245
SEQRES 1 A 159 ASN ILE GLU ALA ASN GLU SER GLU GLU GLU ARG GLN PHE SEQRES 2 A 159 ARG LYS LEU PHE VAL GLN LEU ALA GLY ASP ASP MET GLU SEQRES 3 A 159 VAL SER ALA THR GLU LEU MET ASN ILE LEU ASN LYS VAL SEQRES 4 A 159 VAL THR ARG HIS PRO ASP LEU LYS THR ASP GLY PHE GLY SEQRES 5 A 159 ILE ASP THR CYS ARG SER MET VAL ALA VAL MET ASP SER SEQRES 6 A 159 ASP THR THR GLY LYS LEU GLY PHE GLU GLU PHE LYS TYR SEQRES 7 A 159 LEU TRP ASN ASN ILE LYS LYS TRP GLN GLY ILE TYR LYS SEQRES 8 A 159 ARG PHE ASP THR ASP ARG SER GLY THR ILE GLY SER ASN SEQRES 9 A 159 GLU LEU PRO GLY ALA PHE GLU ALA ALA GLY PHE HIS LEU SEQRES 10 A 159 ASN GLN HIS ILE TYR SER MET ILE ILE ARG ARG TYR SER SEQRES 11 A 159 ASP GLU THR GLY ASN MET ASP PHE ASP ASN PHE ILE SER SEQRES 12 A 159 CYS LEU VAL ARG LEU ASP ALA MET PHE ARG ALA PHE ARG SEQRES 13 A 159 SER LEU ASP SEQRES 1 B 159 ASN ILE GLU ALA ASN GLU SER GLU GLU GLU ARG GLN PHE SEQRES 2 B 159 ARG LYS LEU PHE VAL GLN LEU ALA GLY ASP ASP MET GLU SEQRES 3 B 159 VAL SER ALA THR GLU LEU MET ASN ILE LEU ASN LYS VAL SEQRES 4 B 159 VAL THR ARG HIS PRO ASP LEU LYS THR ASP GLY PHE GLY SEQRES 5 B 159 ILE ASP THR CYS ARG SER MET VAL ALA VAL MET ASP SER SEQRES 6 B 159 ASP THR THR GLY LYS LEU GLY PHE GLU GLU PHE LYS TYR SEQRES 7 B 159 LEU TRP ASN ASN ILE LYS LYS TRP GLN GLY ILE TYR LYS SEQRES 8 B 159 ARG PHE ASP THR ASP ARG SER GLY THR ILE GLY SER ASN SEQRES 9 B 159 GLU LEU PRO GLY ALA PHE GLU ALA ALA GLY PHE HIS LEU SEQRES 10 B 159 ASN GLN HIS ILE TYR SER MET ILE ILE ARG ARG TYR SER SEQRES 11 B 159 ASP GLU THR GLY ASN MET ASP PHE ASP ASN PHE ILE SER SEQRES 12 B 159 CYS LEU VAL ARG LEU ASP ALA MET PHE ARG ALA PHE ARG SEQRES 13 B 159 SER LEU ASP
HET CD A 700 1 HET CD A 701 1 HET CD A 702 1 HET CD A 703 1 HET CD A 704 1 HET CD A 705 1 HET CD B 707 1 HET CD B 708 1 HET CD B 709 1 HET CD B 710 1 HET CD A 711 1 HET CD B 712 1 HET CD B 713 1
HETNAM CD CADMIUM ION
FORMUL 3 CD 13(CD 2+) FORMUL 16 HOH *224(H2 O)
HELIX 1 1 SER A 11 GLY A 26 1 16 HELIX 2 2 ASP A 27 MET A 29 5 3 HELIX 3 3 SER A 32 HIS A 47 1 16 HELIX 4 4 GLY A 56 ASP A 68 1 13 HELIX 5 5 GLY A 76 ASP A 98 1 23 HELIX 6 6 GLU A 109 ALA A 117 1 9 HELIX 7 7 ASN A 122 SER A 134 1 13 HELIX 8 8 ASP A 141 ALA A 158 1 18 HELIX 9 9 GLU B 512 GLY B 526 1 15 HELIX 10 10 ASP B 527 MET B 529 5 3 HELIX 11 11 SER B 532 HIS B 547 1 16 HELIX 12 12 GLY B 556 ASP B 568 1 13 HELIX 13 13 GLY B 576 ASP B 598 1 23 HELIX 14 14 GLU B 609 ALA B 617 1 9 HELIX 15 15 ASN B 622 ILE B 629 1 8 HELIX 16 16 ILE B 630 SER B 634 5 5 HELIX 17 17 ASP B 641 ARG B 657 1 17
LINK CD CD A 700 OE2 GLU A 79 1555 1555 2.93 LINK CD CD A 700 OD1 ASP A 68 1555 1555 2.27 LINK CD CD A 700 O LYS A 74 1555 1555 2.26 LINK CD CD A 700 OE1 GLU A 79 1555 1555 2.14 LINK CD CD A 700 O HOH A 778 1555 1555 2.42 LINK CD CD A 700 OD1 ASP A 70 1555 1555 2.30 LINK CD CD A 700 OG1 THR A 72 1555 1555 2.53 LINK CD CD A 701 O HOH A 774 1555 1555 2.37 LINK CD CD A 701 OD2 ASP A 100 1555 1555 2.31 LINK CD CD A 701 O HOH A 769 1555 1555 2.45 LINK CD CD A 701 O HOH A 771 1555 1555 2.39 LINK CD CD A 702 OE2 GLU A 109 1555 1555 2.68 LINK CD CD A 702 O HOH A 720 1555 1555 2.21 LINK CD CD A 702 OD1 ASP A 100 1555 1555 2.21 LINK CD CD A 702 OE1 GLU A 109 1555 1555 2.29 LINK CD CD A 702 OD1 ASP A 98 1555 1555 2.08 LINK CD CD A 702 OG SER A 102 1555 1555 2.33 LINK CD CD A 702 O THR A 104 1555 1555 2.38 LINK CD CD A 703 OD1 ASP A 28 1555 1555 2.23 LINK CD CD A 703 O GLU A 30 1555 1555 2.37 LINK CD CD A 703 OE1 GLU A 35 1555 1555 2.44 LINK CD CD A 703 O HOH A 772 1555 1555 2.25 LINK CD CD A 703 O ALA A 25 1555 1555 2.19 LINK CD CD A 703 OE2 GLU A 35 1555 1555 2.36 LINK CD CD A 703 O HOH A 726 1555 1555 2.52 LINK CD CD A 704 OD1 ASP A 141 1555 1555 2.22 LINK CD CD A 704 OD2 ASP A 141 1555 1555 2.52 LINK CD CD A 704 OD1 ASN A 144 1555 1555 2.47 LINK CD CD A 704 O HOH A 729 1555 1555 2.33 LINK CD CD A 704 O HOH A 773 1555 1555 2.34 LINK CD CD A 704 OD1 ASP A 53 1555 1555 2.14 LINK CD CD A 704 OD1 ASP A 143 1555 1555 3.06 LINK CD CD A 704 OD2 ASP A 143 1555 1555 2.13 LINK CD CD A 705 OD1 ASP A 27 1555 1555 2.26 LINK CD CD A 705 OD2 ASP A 27 1555 1555 3.12 LINK CD CD A 705 O HOH A 776 1555 1555 2.19 LINK CD CD A 705 O HOH A 768 1555 1555 2.41 LINK CD CD A 711 ND1 HIS A 47 1555 1555 2.32 LINK CD CD A 711 OD1 ASP A 49 1555 1555 2.52 LINK CD CD A 711 O HOH A 777 1555 1555 2.67 LINK CD CD A 711 OD2 ASP A 49 1555 1555 2.19 LINK CD CD B 707 OD1 ASP B 568 1555 1555 2.28 LINK CD CD B 707 OD1 ASP B 570 1555 1555 2.23 LINK CD CD B 707 OG1 THR B 572 1555 1555 2.15 LINK CD CD B 707 O LYS B 574 1555 1555 2.36 LINK CD CD B 707 OE2 GLU B 579 1555 1555 3.08 LINK CD CD B 707 O HOH B 112 1555 1555 2.23 LINK CD CD B 707 OE1 GLU B 579 1555 1555 2.18 LINK CD CD B 708 OD1 ASP B 600 1555 1555 2.25 LINK CD CD B 708 OG SER B 602 1555 1555 2.30 LINK CD CD B 708 O THR B 604 1555 1555 2.36 LINK CD CD B 708 OE1 GLU B 609 1555 1555 2.14 LINK CD CD B 708 OE2 GLU B 609 1555 1555 2.63 LINK CD CD B 708 O HOH B 138 1555 1555 2.14 LINK CD CD B 708 OD1 ASP B 598 1555 1555 1.98 LINK CD CD B 709 OE1 GLU B 535 1555 1555 2.52 LINK CD CD B 709 O HOH B 142 1555 1555 2.17 LINK CD CD B 709 O ALA B 525 1555 1555 2.18 LINK CD CD B 709 OE2 GLU B 535 1555 1555 2.26 LINK CD CD B 709 OD1 ASP B 528 1555 1555 2.27 LINK CD CD B 709 O HOH B 186 1555 1555 2.47 LINK CD CD B 709 O GLU B 530 1555 1555 2.37 LINK CD CD B 710 O HOH B 119 1555 1555 2.17 LINK CD CD B 710 OD1 ASP B 553 1555 1555 2.33 LINK CD CD B 710 OD2 ASP B 641 1555 1555 2.67 LINK CD CD B 710 OD1 ASP B 643 1555 1555 2.81 LINK CD CD B 710 OD2 ASP B 643 1555 1555 2.07 LINK CD CD B 710 OD1 ASN B 644 1555 1555 2.48 LINK CD CD B 710 OD1 ASP B 641 1555 1555 2.33 LINK CD CD B 712 ND1 HIS B 547 1555 1555 2.29 LINK CD CD B 712 OD1 ASP B 549 1555 1555 2.31 LINK CD CD B 712 OD2 ASP B 549 1555 1555 2.73 LINK CD CD B 712 NZ LYS B 595 1555 1555 2.68 LINK CD CD B 713 ND1 HIS B 624 1555 1555 2.41 LINK CD CD B 713 O HOH B 148 1555 1555 2.57 LINK CD CD B 713 O HOH B 198 1555 1555 2.35 LINK CD CD A 701 OE1 GLU B 615 1555 3545 2.36 LINK CD CD A 701 OE2 GLU B 615 1555 3545 2.52 LINK CD CD A 705 OE1 GLU A 115 1555 3655 2.36 LINK CD CD A 705 OE2 GLU A 115 1555 3655 2.31 LINK CD CD A 705 OD2 ASP B 600 1555 1655 2.24 LINK CD CD A 711 NZ LYS B 519 1555 2564 2.59 LINK CD CD B 712 O HOH A 770 1555 2565 2.70
SITE 1 AC1 6 ASP A 68 ASP A 70 THR A 72 LYS A 74 SITE 2 AC1 6 GLU A 79 HOH A 778 SITE 1 AC2 5 ASP A 100 HOH A 769 HOH A 771 HOH A 774 SITE 2 AC2 5 GLU B 615 SITE 1 AC3 6 ASP A 98 ASP A 100 SER A 102 THR A 104 SITE 2 AC3 6 GLU A 109 HOH A 720 SITE 1 AC4 6 ALA A 25 ASP A 28 GLU A 30 GLU A 35 SITE 2 AC4 6 HOH A 726 HOH A 772 SITE 1 AC5 6 ASP A 53 ASP A 141 ASP A 143 ASN A 144 SITE 2 AC5 6 HOH A 729 HOH A 773 SITE 1 AC6 5 ASP A 27 GLU A 115 HOH A 768 HOH A 776 SITE 2 AC6 5 ASP B 600 SITE 1 AC7 6 HOH B 112 ASP B 568 ASP B 570 THR B 572 SITE 2 AC7 6 LYS B 574 GLU B 579 SITE 1 AC8 6 HOH B 138 ASP B 598 ASP B 600 SER B 602 SITE 2 AC8 6 THR B 604 GLU B 609 SITE 1 AC9 6 HOH B 142 HOH B 186 ALA B 525 ASP B 528 SITE 2 AC9 6 GLU B 530 GLU B 535 SITE 1 BC1 5 HOH B 119 ASP B 553 ASP B 641 ASP B 643 SITE 2 BC1 5 ASN B 644 SITE 1 BC2 4 HIS A 47 ASP A 49 HOH A 777 LYS B 519 SITE 1 BC3 4 HOH A 770 HIS B 547 ASP B 549 LYS B 595 SITE 1 BC4 4 HOH B 148 HOH B 198 HIS B 624 MET B 628
CRYST1 58.040 67.570 75.070 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017229 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014799 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013321 0.00000