1NMJ - Header Asymmetric Unit

HEADER MEMBRANE PROTEIN 10-JAN-03 1NMJ

TITLE THE SOLUTION STRUCTURE OF RAT AB-(1-28) AND ITS INTERACTION TITLE 2 WITH ZINC: INSIGHTS INTO THE SCARITY OF AMYLOID DEPOSITION TITLE 3 IN AGED RAT BRAIN

CAVEAT 1NMJ THERE ARE SEVERAL CHIRALITY ERRORS AT THE CA CAVEAT 2 1NMJ CENTER.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE FROM ALZHEIMER'S DISEASE COMPND 3 AMYLOID A4 PROTEIN HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562

KEYWDS GLYCOPROTEIN, AMYLOID, MEMBRANE PROTEIN

EXPDTA SOLUTION NMR

AUTHOR J.HUANG,Y.YAO,W.X.TANG

REVDAT 3 24-FEB-09 1NMJ 1 VERSN REVDAT 2 03-MAY-05 1NMJ 1 AUTHOR JRNL REVDAT 1 28-JAN-03 1NMJ 0

JRNL AUTH J.HUANG,Y.YAO,J.LIN,Y.H.YE,W.Y.SUN,W.X.TANG JRNL TITL THE SOLUTION STRUCTURE OF RAT ABETA-(1-28) AND ITS JRNL TITL 2 INTERACTION WITH ZINC ION: INSIGHTS INTO THE JRNL TITL 3 SCARCITY OF AMYLOID DEPOSITION IN AGED RAT BRAIN JRNL REF J.BIOL.INORG.CHEM. V. 9 627 2004 JRNL REFN ISSN 0949-8257 JRNL PMID 15160315 JRNL DOI 10.1007/S00775-004-0556-X

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1NMJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-03. REMARK 100 THE RCSB ID CODE IS RCSB018005.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 2MM RAT AB-(1-28) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 46.03 -72.57 REMARK 500 PHE A 10 -79.42 1.33 REMARK 500 VAL A 12 -75.42 37.01 REMARK 500 ARG A 13 33.17 -70.51 REMARK 500 HIS A 14 12.07 54.72 REMARK 500 GLN A 15 -62.88 58.60 REMARK 500 PHE A 19 -82.56 -77.65 REMARK 500 ASN A 27 -103.56 -0.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 26 ASN A 27 148.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 1 125.3 ALPHA-CARBON REMARK 500 ASN A 27 139.5 ALPHA-CARBON REMARK 500 LYS A 28 121.8 ALPHA-CARBON REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AMB RELATED DB: PDB REMARK 900 RELATED ID: 1AMC RELATED DB: PDB REMARK 900 RELATED ID: 1BJB RELATED DB: PDB REMARK 900 RELATED ID: 1BJC RELATED DB: PDB

DBREF 1NMJ A 1 28 UNP P08592 A4_RAT 672 699

SEQRES 1 A 28 ASP ALA GLU PHE GLY HIS ASP SER GLY PHE GLU VAL ARG SEQRES 2 A 28 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 A 28 ASN LYS

HELIX 1 1 GLN A 15 GLY A 25 1 11

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000