10 20 30 40 50 60 70 80 1NJ9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 30-DEC-02 1NJ9
TITLE COCAINE HYDROLYTIC ANTIBODY 15A10
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN VARIABLE CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN; COMPND 6 CHAIN: H, B
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090
KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR N.A.LARSEN,P.DE PRADA,S.X.DENG,X.ZHU,D.W.LANDRY,I.A.WILSON
REVDAT 3 24-FEB-09 1NJ9 1 VERSN REVDAT 2 21-SEP-04 1NJ9 1 JRNL REVDAT 1 17-FEB-04 1NJ9 0
JRNL AUTH N.A.LARSEN,P.DE PRADA,S.X.DENG,A.MITTAL,M.BRASKETT, JRNL AUTH 2 X.ZHU,I.A.WILSON,D.W.LANDRY JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF JRNL TITL 2 COCAINE-DEGRADING ANTIBODY 15A10. JRNL REF BIOCHEMISTRY V. 43 8067 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15209502 JRNL DOI 10.1021/BI049495L
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.A.LARSEN,A.HEINE,P.DE PRADA,E.R.REDWAN, REMARK 1 AUTH 2 T.O.YEATES,D.W.LANDRY,I.A.WILSON REMARK 1 TITL STRUCTURE DETERMINATION OF A COCAINE HYDROLYTIC REMARK 1 TITL 2 ANTIBODY FROM A PSEUDOMEROHEDRALLY TWINNED CRYSTAL. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 2055 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444902017420
REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX-97, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 29505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.97 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 30.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.40 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NJ9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB017917.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : 0.39900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 4000, 12-14% ISOPROPANOL, REMARK 280 100MM MES, PH 5.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 296K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 4 CB CG CD1 CD2 REMARK 470 VAL B 12 CG1 CG2 REMARK 470 THR B 107 OG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 170 O HOH B 1024 2.03 REMARK 500 OD1 ASP B 52 ND2 ASN B 54 2.06 REMARK 500 O VAL L 50 ND2 ASN L 52 2.07 REMARK 500 ND1 HIS B 198 OG SER B 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 41 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO L 55 N - CA - C ANGL. DEV. = 34.9 DEGREES REMARK 500 PRO L 56 N - CA - C ANGL. DEV. = -25.8 DEGREES REMARK 500 PRO L 56 C - N - CA ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO L 56 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 SER L 93 N - CA - C ANGL. DEV. = 23.2 DEGREES REMARK 500 SER L 93 CA - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 SER A 93 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 GLY B 126 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 SER B 127 C - N - CA ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 2 -159.36 -80.30 REMARK 500 PRO L 40 60.58 -55.27 REMARK 500 ASP L 41 26.45 -150.89 REMARK 500 VAL L 50 26.51 40.03 REMARK 500 ASN L 51 3.51 58.88 REMARK 500 ASN L 52 -73.68 -145.42 REMARK 500 ALA L 53 121.09 -17.99 REMARK 500 ARG L 54 -76.49 -90.82 REMARK 500 ALA L 84 -174.41 -174.79 REMARK 500 ASN L 94 16.64 84.06 REMARK 500 MET L 160 85.01 -5.32 REMARK 500 ASN L 171 -13.98 72.76 REMARK 500 ALA L 175 170.51 179.50 REMARK 500 LEU L 181 -173.32 -175.03 REMARK 500 HIS L 189 -169.70 -113.50 REMARK 500 SER L 190 -52.36 -126.73 REMARK 500 GLU L 199 -141.50 73.95 REMARK 500 LEU H 4 73.25 -114.84 REMARK 500 HIS H 41 103.55 -36.62 REMARK 500 SER H 44 -154.18 52.37 REMARK 500 ASN H 54 -9.11 -145.73 REMARK 500 GLN H 64 -54.67 -28.32 REMARK 500 ASP H 72 75.72 -118.04 REMARK 500 ALA H 88 -171.50 175.45 REMARK 500 LEU H 98 173.45 172.22 REMARK 500 ALA H 101 -92.62 -65.78 REMARK 500 SER H 112 -158.99 174.09 REMARK 500 ALA H 113 -127.52 -80.34 REMARK 500 ALA H 128 -90.67 -86.37 REMARK 500 ALA H 129 -102.56 163.37 REMARK 500 GLN H 130 95.61 -173.31 REMARK 500 PHE H 145 131.58 -179.05 REMARK 500 PRO H 146 -155.44 -87.82 REMARK 500 GLN H 170 -80.85 -101.43 REMARK 500 SER H 171 51.55 -98.94 REMARK 500 LYS H 204 95.66 -162.92 REMARK 500 TYR A 32 41.37 39.86 REMARK 500 PRO A 40 95.02 -41.67 REMARK 500 ASP A 41 58.69 102.96 REMARK 500 ASN A 52 -84.76 -168.58 REMARK 500 ALA A 53 104.52 -37.13 REMARK 500 PRO A 56 39.34 -63.93 REMARK 500 ASP A 69 37.81 -147.44 REMARK 500 LEU A 107 98.81 -57.51 REMARK 500 SER A 122 -153.79 -75.26 REMARK 500 SER A 123 -76.42 -106.76 REMARK 500 ASN A 129 39.29 71.86 REMARK 500 MET A 160 90.45 -44.33 REMARK 500 GLU A 161 79.55 -103.60 REMARK 500 GLU A 199 -123.70 66.89 REMARK 500 HIS B 41 99.75 -57.58 REMARK 500 SER B 44 -158.51 51.17 REMARK 500 ALA B 49 -176.00 -173.74 REMARK 500 GLN B 64 -54.88 -29.01 REMARK 500 SER B 76 49.57 75.06 REMARK 500 SER B 82B 43.17 33.26 REMARK 500 ALA B 88 -176.70 -172.86 REMARK 500 LEU B 98 -177.35 -174.35 REMARK 500 PHE B 99 74.67 -69.67 REMARK 500 ALA B 101 -80.87 -63.83 REMARK 500 SER B 112 -143.72 -169.53 REMARK 500 ALA B 113 -147.00 -90.37 REMARK 500 ALA B 128 -87.41 176.16 REMARK 500 ALA B 129 -145.90 177.20 REMARK 500 PHE B 145 136.93 -171.16 REMARK 500 PRO B 146 -168.87 -105.16 REMARK 500 GLN B 170 -115.61 -96.63 REMARK 500 SER B 184 3.21 -68.40 REMARK 500 SER B 185 -61.13 -92.51 REMARK 500 SER B 202 17.61 54.10 REMARK 500 LYS B 204 89.59 -162.21 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H1017 O REMARK 620 2 ARG H 212 OXT 100.4 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1000 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 1001 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 1002 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 1003 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 1004 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 1005 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1007
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE REMARK 999 WAS NOT AVAILABLE AT THE TIME OF PROCESSING.
DBREF 1NJ9 L 1 210 PDB 1NJ9 1NJ9 1 210 DBREF 1NJ9 H 1 212 PDB 1NJ9 1NJ9 1 212 DBREF 1NJ9 A 1 210 PDB 1NJ9 1NJ9 1 210 DBREF 1NJ9 B 1 212 PDB 1NJ9 1NJ9 1 212
SEQRES 1 L 212 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 212 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 212 GLY THR ILE THR SER ASP ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 212 GLU LYS PRO ASP HIS LEU PHE SER GLY LEU ILE GLY VAL SEQRES 5 L 212 ASN ASN ALA ARG PRO PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 212 GLY SER LEU THR GLY ASP LYS ALA VAL LEU THR ILE THR SEQRES 7 L 212 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 212 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 L 212 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 L 212 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 L 212 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 L 212 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 L 212 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 L 212 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 L 212 LEU THR ALA ARG GLU TRP GLU ARG HIS SER SER TYR SER SEQRES 16 L 212 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 L 212 LEU SER ARG ALA SEQRES 1 H 215 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 215 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 215 TYR SER PHE THR ASP TYR ASN MET TYR TRP VAL LYS GLN SEQRES 4 H 215 ASN HIS GLY GLU SER LEU GLU TRP ILE ALA TYR ILE ASP SEQRES 5 H 215 PRO SER ASN GLY ASP THR PHE TYR ASN GLN LYS PHE GLN SEQRES 6 H 215 GLY LYS ALA THR VAL THR LEU ASP LYS SER SER SER THR SEQRES 7 H 215 ALA PHE MET HIS LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 215 ALA VAL TYR TYR CYS ALA ARG GLY GLY GLY LEU PHE ALA SEQRES 9 H 215 PHE TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA LYS SEQRES 10 H 215 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER SEQRES 11 H 215 ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 H 215 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 H 215 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 H 215 VAL THR VAL PRO SER SER PRO ARG PRO SER GLU THR VAL SEQRES 16 H 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 H 215 ASP LYS LYS ILE VAL PRO ARG SEQRES 1 A 212 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 A 212 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 A 212 GLY THR ILE THR SER ASP ASN TYR ALA ASN TRP VAL GLN SEQRES 4 A 212 GLU LYS PRO ASP HIS LEU PHE SER GLY LEU ILE GLY VAL SEQRES 5 A 212 ASN ASN ALA ARG PRO PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 A 212 GLY SER LEU THR GLY ASP LYS ALA VAL LEU THR ILE THR SEQRES 7 A 212 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 A 212 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 A 212 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 A 212 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 A 212 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 A 212 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 A 212 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 A 212 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 A 212 LEU THR ALA ARG GLU TRP GLU ARG HIS SER SER TYR SER SEQRES 16 A 212 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 A 212 LEU SER ARG ALA SEQRES 1 B 215 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 B 215 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 215 TYR SER PHE THR ASP TYR ASN MET TYR TRP VAL LYS GLN SEQRES 4 B 215 ASN HIS GLY GLU SER LEU GLU TRP ILE ALA TYR ILE ASP SEQRES 5 B 215 PRO SER ASN GLY ASP THR PHE TYR ASN GLN LYS PHE GLN SEQRES 6 B 215 GLY LYS ALA THR VAL THR LEU ASP LYS SER SER SER THR SEQRES 7 B 215 ALA PHE MET HIS LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 B 215 ALA VAL TYR TYR CYS ALA ARG GLY GLY GLY LEU PHE ALA SEQRES 9 B 215 PHE TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA LYS SEQRES 10 B 215 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER SEQRES 11 B 215 ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU SEQRES 12 B 215 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 B 215 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 B 215 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 B 215 VAL THR VAL PRO SER SER PRO ARG PRO SER GLU THR VAL SEQRES 16 B 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 B 215 ASP LYS LYS ILE VAL PRO ARG
HET NA A1000 1 HET NA L1001 1 HET NA H1002 1 HET NA L1003 1 HET NA H1004 1 HET NA H1005 1 HET NA B1006 1 HET NA B1007 1
HETNAM NA SODIUM ION
FORMUL 5 NA 8(NA 1+) FORMUL 13 HOH *107(H2 O)
HELIX 1 1 THR L 28 TYR L 32 5 5 HELIX 2 2 GLN L 79 GLU L 83 5 5 HELIX 3 3 SER L 122 GLU L 127 1 6 HELIX 4 4 THR L 182 GLU L 187 1 6 HELIX 5 5 THR H 83 SER H 87 5 5 HELIX 6 6 SER H 185 GLU H 190 1 6 HELIX 7 7 PRO H 199 SER H 202 5 4 HELIX 8 8 THR A 28 TYR A 32 5 5 HELIX 9 9 GLN A 79 GLU A 83 5 5 HELIX 10 10 GLU A 125 ASN A 129 5 5 HELIX 11 11 THR A 182 GLU A 187 1 6 HELIX 12 12 THR B 83 SER B 87 5 5 HELIX 13 13 PRO B 199 SER B 202 5 4
SHEET 1 A 4 THR L 5 GLN L 6 0 SHEET 2 A 4 GLU L 17 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 LYS L 70 ALA L 78 -1 O ALA L 78 N GLU L 17 SHEET 4 A 4 PHE L 62 LEU L 66 -1 N SER L 63 O THR L 74 SHEET 1 B 4 LEU L 43 ILE L 48 0 SHEET 2 B 4 ASN L 34 LYS L 39 -1 N GLN L 37 O SER L 45 SHEET 3 B 4 ALA L 84 TYR L 92 -1 O PHE L 87 N VAL L 36 SHEET 4 B 4 HIS L 95 PHE L 98 -1 O HIS L 95 N TYR L 92 SHEET 1 C 5 LEU L 43 ILE L 48 0 SHEET 2 C 5 ASN L 34 LYS L 39 -1 N GLN L 37 O SER L 45 SHEET 3 C 5 ALA L 84 TYR L 92 -1 O PHE L 87 N VAL L 36 SHEET 4 C 5 THR L 102 VAL L 106 -1 O THR L 102 N TYR L 86 SHEET 5 C 5 ALA L 9 THR L 13 1 N LEU L 11 O LYS L 103 SHEET 1 D 4 SER L 115 PHE L 119 0 SHEET 2 D 4 LEU L 133 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 D 4 TYR L 173 LEU L 179 -1 O ALA L 175 N ILE L 137 SHEET 4 D 4 GLU L 161 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 E 4 SER L 115 PHE L 119 0 SHEET 2 E 4 LEU L 133 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 E 4 TYR L 173 LEU L 179 -1 O ALA L 175 N ILE L 137 SHEET 4 E 4 SER L 166 LYS L 167 -1 N SER L 166 O MET L 174 SHEET 1 F 4 THR L 154 PRO L 155 0 SHEET 2 F 4 THR L 146 VAL L 151 -1 N VAL L 151 O THR L 154 SHEET 3 F 4 SER L 191 THR L 197 -1 O THR L 197 N THR L 146 SHEET 4 F 4 THR L 202 SER L 208 -1 O VAL L 203 N VAL L 196 SHEET 1 G 4 GLN H 3 GLN H 6 0 SHEET 2 G 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 G 4 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 4 G 4 ALA H 67 ASP H 72 -1 N THR H 68 O HIS H 81 SHEET 1 H 6 GLU H 10 VAL H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 H 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 H 6 MET H 34 ASN H 40 -1 N TYR H 35 O ALA H 93 SHEET 5 H 6 SER H 44 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 H 6 THR H 57 TYR H 59 -1 O PHE H 58 N TYR H 50 SHEET 1 I 4 SER H 119 LEU H 123 0 SHEET 2 I 4 MET H 134 TYR H 144 -1 O LEU H 140 N TYR H 121 SHEET 3 I 4 TYR H 174 PRO H 183 -1 O LEU H 176 N VAL H 141 SHEET 4 I 4 HIS H 163 LEU H 169 -1 N VAL H 168 O THR H 175 SHEET 1 J 3 THR H 150 TRP H 153 0 SHEET 2 J 3 THR H 193 HIS H 198 -1 O ALA H 197 N THR H 150 SHEET 3 J 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SHEET 1 K 4 THR A 5 GLN A 6 0 SHEET 2 K 4 VAL A 19 ARG A 24 -1 O ARG A 24 N THR A 5 SHEET 3 K 4 LYS A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 4 K 4 PHE A 62 LEU A 66 -1 N SER A 63 O THR A 74 SHEET 1 L 4 LEU A 43 GLY A 49 0 SHEET 2 L 4 ASN A 34 LYS A 39 -1 N TRP A 35 O ILE A 48 SHEET 3 L 4 ALA A 84 TYR A 92 -1 O ILE A 85 N GLU A 38 SHEET 4 L 4 HIS A 95 PHE A 98 -1 O VAL A 97 N LEU A 90 SHEET 1 M 5 LEU A 43 GLY A 49 0 SHEET 2 M 5 ASN A 34 LYS A 39 -1 N TRP A 35 O ILE A 48 SHEET 3 M 5 ALA A 84 TYR A 92 -1 O ILE A 85 N GLU A 38 SHEET 4 M 5 THR A 102 VAL A 106 -1 O THR A 102 N TYR A 86 SHEET 5 M 5 ALA A 9 THR A 13 1 N THR A 13 O THR A 105 SHEET 1 N 4 SER A 115 PHE A 119 0 SHEET 2 N 4 ALA A 131 PHE A 140 -1 O VAL A 134 N PHE A 119 SHEET 3 N 4 TYR A 173 LEU A 181 -1 O ALA A 175 N ILE A 137 SHEET 4 N 4 SER A 166 LYS A 167 -1 N SER A 166 O MET A 174 SHEET 1 O 4 THR A 154 VAL A 156 0 SHEET 2 O 4 THR A 146 VAL A 151 -1 N TRP A 149 O VAL A 156 SHEET 3 O 4 SER A 191 HIS A 198 -1 O THR A 197 N THR A 146 SHEET 4 O 4 HIS A 201 SER A 208 -1 O VAL A 203 N VAL A 196 SHEET 1 P 4 GLN B 3 GLN B 6 0 SHEET 2 P 4 VAL B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 P 4 THR B 77 LEU B 82 -1 O MET B 80 N VAL B 20 SHEET 4 P 4 ALA B 67 THR B 70 -1 N THR B 68 O HIS B 81 SHEET 1 Q 6 GLU B 10 VAL B 12 0 SHEET 2 Q 6 THR B 107 VAL B 111 1 O LEU B 108 N GLU B 10 SHEET 3 Q 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 109 SHEET 4 Q 6 MET B 34 GLN B 39 -1 N TYR B 35 O ALA B 93 SHEET 5 Q 6 TRP B 47 ILE B 51 -1 O ILE B 48 N TRP B 36 SHEET 6 Q 6 THR B 57 TYR B 59 -1 O PHE B 58 N TYR B 50 SHEET 1 R 4 SER B 119 LEU B 123 0 SHEET 2 R 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 121 SHEET 3 R 4 TYR B 174 PRO B 183 -1 O LEU B 176 N VAL B 141 SHEET 4 R 4 VAL B 162 THR B 164 -1 N HIS B 163 O SER B 179 SHEET 1 S 4 SER B 119 LEU B 123 0 SHEET 2 S 4 MET B 134 TYR B 144 -1 O LEU B 140 N TYR B 121 SHEET 3 S 4 TYR B 174 PRO B 183 -1 O LEU B 176 N VAL B 141 SHEET 4 S 4 VAL B 168 LEU B 169 -1 N VAL B 168 O THR B 175 SHEET 1 T 3 THR B 150 TRP B 153 0 SHEET 2 T 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 T 3 THR B 203 LYS B 208 -1 O THR B 203 N HIS B 198
SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 139 CYS H 194 1555 1555 2.03 SSBOND 5 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 6 CYS A 135 CYS A 194 1555 1555 2.03 SSBOND 7 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 8 CYS B 139 CYS B 194 1555 1555 2.03
LINK NA NA H1004 O HOH H1017 1555 1555 2.57 LINK OD1 ASP L 41 NA NA L1003 1555 1555 2.66 LINK N TRP H 153 NA NA H1005 1555 1555 2.83 LINK O THR H 203 NA NA H1002 1555 1555 2.81 LINK OXT ARG H 212 NA NA H1004 1555 1555 2.85 LINK N ALA A 33 NA NA A1000 1555 1555 2.98
CISPEP 1 TYR L 141 PRO L 142 0 0.97 CISPEP 2 PHE H 145 PRO H 146 0 -4.27 CISPEP 3 GLU H 147 PRO H 148 0 2.94 CISPEP 4 ARG H 187 PRO H 188 0 -0.34 CISPEP 5 TYR A 141 PRO A 142 0 -0.30 CISPEP 6 PHE B 145 PRO B 146 0 -0.85 CISPEP 7 GLU B 147 PRO B 148 0 0.81 CISPEP 8 ARG B 187 PRO B 188 0 0.27
SITE 1 AC1 4 THR A 28 TYR A 32 ALA A 33 VAL A 50 SITE 1 AC2 1 ARG L 61 SITE 1 AC3 1 THR H 203 SITE 1 AC4 2 LYS L 39 ASP L 41 SITE 1 AC5 2 ARG H 212 HOH H1017 SITE 1 AC6 5 THR H 152 TRP H 153 GLY H 156 LEU H 158 SITE 2 AC6 5 HOH H1026 SITE 1 AC7 1 LEU B 158
CRYST1 37.500 108.400 111.300 90.00 90.00 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.026667 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009225 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008985 0.00000