10 20 30 40 50 60 70 80 1NC8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 14-MAY-98 1NC8
TITLE HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL TITLE 2 ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 TITLE 3 NUCLEOCAPSID PROTEIN, 15 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-29; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11709
KEYWDS NUCLEOCAPSID PROTEIN, HIV-2, RNA RECOGNITION, ZINC FINGER, KEYWDS 2 VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR Y.KODERA,K.SATO,T.TSUKAHARA,H.KOMATSU,T.MAEDA,T.KOHNO
REVDAT 2 24-FEB-09 1NC8 1 VERSN REVDAT 1 25-MAY-99 1NC8 0
JRNL AUTH Y.KODERA,K.SATO,T.TSUKAHARA,H.KOMATSU,T.MAEDA, JRNL AUTH 2 T.KOHNO JRNL TITL HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE JRNL TITL 2 MINIMAL ACTIVE DOMAIN OF THE HUMAN JRNL TITL 3 IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN. JRNL REF BIOCHEMISTRY V. 37 17704 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9922136 JRNL DOI 10.1021/BI981818O
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1NC8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 17 SG CYS A 22 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 3 76.23 44.62 REMARK 500 1 ASN A 11 -76.93 -41.00 REMARK 500 1 ALA A 24 -74.72 -74.86 REMARK 500 1 ARG A 27 85.69 -178.79 REMARK 500 2 ARG A 4 76.50 177.21 REMARK 500 2 CYS A 9 109.63 -41.78 REMARK 500 2 ASN A 11 -79.29 -38.91 REMARK 500 2 ALA A 24 -72.86 -81.00 REMARK 500 2 ARG A 27 105.88 174.81 REMARK 500 3 LYS A 5 -96.77 -96.08 REMARK 500 3 VAL A 6 176.86 49.02 REMARK 500 3 CYS A 9 98.88 -41.05 REMARK 500 3 ASN A 11 -79.12 -39.79 REMARK 500 3 ALA A 24 -77.20 -71.57 REMARK 500 3 ARG A 27 100.02 166.61 REMARK 500 4 GLN A 2 -140.92 -71.91 REMARK 500 4 CYS A 9 97.30 -48.43 REMARK 500 4 ALA A 24 -76.50 -87.37 REMARK 500 4 ARG A 27 95.45 169.46 REMARK 500 4 GLN A 28 15.89 59.91 REMARK 500 5 GLN A 3 72.21 65.32 REMARK 500 5 ARG A 4 85.88 -163.43 REMARK 500 5 CYS A 9 108.32 -43.00 REMARK 500 5 ALA A 24 -82.08 -72.96 REMARK 500 5 ARG A 27 95.93 164.17 REMARK 500 6 LYS A 5 96.61 55.09 REMARK 500 6 CYS A 9 98.90 -45.77 REMARK 500 6 ALA A 24 -77.91 -72.02 REMARK 500 6 ARG A 27 103.80 171.14 REMARK 500 7 GLN A 2 61.57 -113.57 REMARK 500 7 LYS A 5 -43.20 -142.19 REMARK 500 7 CYS A 9 93.89 -39.91 REMARK 500 7 ALA A 24 -80.05 -68.12 REMARK 500 7 ARG A 27 113.55 172.21 REMARK 500 8 GLN A 2 151.67 176.39 REMARK 500 8 LYS A 5 143.09 168.23 REMARK 500 8 VAL A 6 155.42 -43.07 REMARK 500 8 CYS A 9 101.55 -43.22 REMARK 500 8 ALA A 24 -80.82 -82.16 REMARK 500 8 ARG A 27 100.92 172.87 REMARK 500 9 VAL A 6 166.83 54.49 REMARK 500 9 ALA A 24 -93.91 -68.65 REMARK 500 9 ARG A 27 103.14 175.62 REMARK 500 10 CYS A 9 97.96 -34.50 REMARK 500 10 ALA A 24 -78.52 -65.37 REMARK 500 10 ARG A 27 111.44 178.31 REMARK 500 11 ARG A 4 159.03 64.92 REMARK 500 11 GLU A 15 137.13 -32.20 REMARK 500 11 CYS A 22 96.65 -54.94 REMARK 500 11 ALA A 24 -76.63 -74.42 REMARK 500 12 GLN A 2 -85.48 65.53 REMARK 500 12 GLU A 15 128.84 -39.23 REMARK 500 12 ALA A 24 -83.22 -68.19 REMARK 500 12 ARG A 27 97.19 170.86 REMARK 500 13 GLN A 3 -177.17 67.39 REMARK 500 13 ARG A 4 173.04 73.55 REMARK 500 13 LYS A 5 78.94 -105.55 REMARK 500 13 CYS A 9 109.59 -41.88 REMARK 500 13 ASN A 11 -70.18 -44.72 REMARK 500 13 GLU A 15 138.36 -36.44 REMARK 500 13 ALA A 24 -73.05 -83.54 REMARK 500 13 ARG A 27 111.63 -179.24 REMARK 500 14 GLN A 2 -158.81 -114.27 REMARK 500 14 GLN A 3 149.83 60.42 REMARK 500 14 VAL A 6 118.83 57.75 REMARK 500 14 CYS A 9 98.80 -43.27 REMARK 500 14 ASN A 11 -77.54 -41.66 REMARK 500 14 GLU A 15 137.03 -29.82 REMARK 500 14 ARG A 27 106.69 -162.11 REMARK 500 15 LYS A 5 36.64 -178.41 REMARK 500 15 VAL A 6 159.09 -43.78 REMARK 500 15 GLU A 15 145.88 -36.49 REMARK 500 15 ALA A 24 -76.15 -80.61 REMARK 500 15 ARG A 27 100.07 -177.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 4 0.32 SIDE_CHAIN REMARK 500 1 ARG A 8 0.27 SIDE_CHAIN REMARK 500 1 ARG A 20 0.28 SIDE_CHAIN REMARK 500 1 ARG A 23 0.18 SIDE_CHAIN REMARK 500 1 ARG A 26 0.31 SIDE_CHAIN REMARK 500 1 ARG A 27 0.31 SIDE_CHAIN REMARK 500 2 ARG A 4 0.23 SIDE_CHAIN REMARK 500 2 ARG A 8 0.31 SIDE_CHAIN REMARK 500 2 ARG A 20 0.20 SIDE_CHAIN REMARK 500 2 ARG A 23 0.21 SIDE_CHAIN REMARK 500 2 ARG A 26 0.31 SIDE_CHAIN REMARK 500 2 ARG A 27 0.18 SIDE_CHAIN REMARK 500 3 ARG A 8 0.27 SIDE_CHAIN REMARK 500 3 ARG A 20 0.18 SIDE_CHAIN REMARK 500 3 ARG A 26 0.28 SIDE_CHAIN REMARK 500 3 ARG A 27 0.25 SIDE_CHAIN REMARK 500 4 ARG A 4 0.20 SIDE_CHAIN REMARK 500 4 ARG A 8 0.27 SIDE_CHAIN REMARK 500 4 ARG A 20 0.20 SIDE_CHAIN REMARK 500 4 ARG A 26 0.32 SIDE_CHAIN REMARK 500 4 ARG A 27 0.15 SIDE_CHAIN REMARK 500 5 ARG A 8 0.28 SIDE_CHAIN REMARK 500 5 ARG A 20 0.29 SIDE_CHAIN REMARK 500 5 ARG A 23 0.24 SIDE_CHAIN REMARK 500 5 ARG A 27 0.09 SIDE_CHAIN REMARK 500 6 ARG A 4 0.25 SIDE_CHAIN REMARK 500 6 ARG A 8 0.31 SIDE_CHAIN REMARK 500 6 ARG A 20 0.18 SIDE_CHAIN REMARK 500 6 ARG A 23 0.27 SIDE_CHAIN REMARK 500 6 ARG A 27 0.22 SIDE_CHAIN REMARK 500 7 ARG A 4 0.20 SIDE_CHAIN REMARK 500 7 ARG A 8 0.29 SIDE_CHAIN REMARK 500 7 ARG A 20 0.21 SIDE_CHAIN REMARK 500 7 ARG A 23 0.31 SIDE_CHAIN REMARK 500 7 ARG A 26 0.11 SIDE_CHAIN REMARK 500 7 ARG A 27 0.22 SIDE_CHAIN REMARK 500 8 ARG A 4 0.11 SIDE_CHAIN REMARK 500 8 ARG A 8 0.21 SIDE_CHAIN REMARK 500 8 ARG A 20 0.22 SIDE_CHAIN REMARK 500 8 ARG A 23 0.27 SIDE_CHAIN REMARK 500 8 ARG A 27 0.32 SIDE_CHAIN REMARK 500 9 ARG A 4 0.30 SIDE_CHAIN REMARK 500 9 ARG A 8 0.23 SIDE_CHAIN REMARK 500 9 ARG A 20 0.22 SIDE_CHAIN REMARK 500 9 ARG A 23 0.32 SIDE_CHAIN REMARK 500 9 ARG A 26 0.12 SIDE_CHAIN REMARK 500 9 ARG A 27 0.32 SIDE_CHAIN REMARK 500 10 ARG A 4 0.27 SIDE_CHAIN REMARK 500 10 ARG A 8 0.32 SIDE_CHAIN REMARK 500 10 ARG A 20 0.30 SIDE_CHAIN REMARK 500 10 ARG A 23 0.29 SIDE_CHAIN REMARK 500 10 ARG A 26 0.31 SIDE_CHAIN REMARK 500 10 ARG A 27 0.18 SIDE_CHAIN REMARK 500 11 ARG A 4 0.26 SIDE_CHAIN REMARK 500 11 ARG A 8 0.21 SIDE_CHAIN REMARK 500 11 ARG A 23 0.32 SIDE_CHAIN REMARK 500 11 ARG A 26 0.30 SIDE_CHAIN REMARK 500 11 ARG A 27 0.21 SIDE_CHAIN REMARK 500 12 ARG A 4 0.28 SIDE_CHAIN REMARK 500 12 ARG A 8 0.28 SIDE_CHAIN REMARK 500 12 ARG A 20 0.27 SIDE_CHAIN REMARK 500 12 ARG A 23 0.26 SIDE_CHAIN REMARK 500 12 ARG A 26 0.25 SIDE_CHAIN REMARK 500 12 ARG A 27 0.27 SIDE_CHAIN REMARK 500 13 ARG A 4 0.32 SIDE_CHAIN REMARK 500 13 ARG A 8 0.21 SIDE_CHAIN REMARK 500 13 ARG A 20 0.27 SIDE_CHAIN REMARK 500 13 ARG A 23 0.24 SIDE_CHAIN REMARK 500 13 ARG A 26 0.26 SIDE_CHAIN REMARK 500 13 ARG A 27 0.20 SIDE_CHAIN REMARK 500 14 ARG A 8 0.26 SIDE_CHAIN REMARK 500 14 ARG A 20 0.31 SIDE_CHAIN REMARK 500 14 ARG A 23 0.20 SIDE_CHAIN REMARK 500 14 ARG A 26 0.31 SIDE_CHAIN REMARK 500 14 ARG A 27 0.09 SIDE_CHAIN REMARK 500 15 ARG A 4 0.30 SIDE_CHAIN REMARK 500 15 ARG A 8 0.31 SIDE_CHAIN REMARK 500 15 ARG A 20 0.11 SIDE_CHAIN REMARK 500 15 ARG A 23 0.24 SIDE_CHAIN REMARK 500 15 ARG A 26 0.10 SIDE_CHAIN REMARK 500 15 ARG A 27 0.26 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 30 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 86.9 REMARK 620 3 HIS A 17 CE1 96.3 174.7 REMARK 620 4 HIS A 17 NE2 69.3 144.0 41.3 REMARK 620 5 CYS A 22 SG 68.4 91.2 93.9 55.5 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CCHC ZINC FINGER. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 30
DBREF 1NC8 A 1 29 UNP P18042 POL_HV2G1 384 412
SEQRES 1 A 29 ALA GLN GLN ARG LYS VAL ILE ARG CYS TRP ASN CYS GLY SEQRES 2 A 29 LYS GLU GLY HIS SER ALA ARG GLN CYS ARG ALA PRO ARG SEQRES 3 A 29 ARG GLN GLY
HET ZN A 30 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ALA A 19 GLN A 21 5 3
SSBOND 1 CYS A 9 CYS A 22 1555 1555 2.59
LINK ZN ZN A 30 SG CYS A 9 1555 1555 2.30 LINK ZN ZN A 30 SG CYS A 12 1555 1555 2.30 LINK ZN ZN A 30 CE1 HIS A 17 1555 1555 1.72 LINK ZN ZN A 30 NE2 HIS A 17 1555 1555 2.00 LINK ZN ZN A 30 SG CYS A 22 1555 1555 2.30
SITE 1 ZNB 14 CYS A 9 TRP A 10 ASN A 11 CYS A 12 SITE 2 ZNB 14 GLY A 13 LYS A 14 GLU A 15 GLY A 16 SITE 3 ZNB 14 HIS A 17 SER A 18 ALA A 19 ARG A 20 SITE 4 ZNB 14 GLN A 21 CYS A 22 SITE 1 AC1 5 CYS A 9 CYS A 12 LYS A 14 HIS A 17 SITE 2 AC1 5 CYS A 22
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000