1NBR - Header Asymmetric Unit

HEADER RNA 03-DEC-02 1NBR

TITLE IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA HAIRPIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION USING SYNTHETIC RNA

KEYWDS RIBONUCLEIC ACID, RNA, HAIRPIN, TRANSLATIONAL REGULATION

EXPDTA SOLUTION NMR

NUMMDL 15

AUTHOR S.A.MCCALLUM,A.PARDI

REVDAT 2 24-FEB-09 1NBR 1 VERSN REVDAT 1 04-MAR-03 1NBR 0

JRNL AUTH S.A.MCCALLUM,A.PARDI JRNL TITL REFINED SOLUTION STRUCTURE OF THE IRON-RESPONSIVE JRNL TITL 2 ELEMENT RNA USING RESIDUAL DIPOLAR COUPLINGS JRNL REF J.MOL.BIOL. V. 326 1037 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12589752 JRNL DOI 10.1016/S0022-2836(02)01431-6

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.J.ADDESS,J.P.BASILION,R.D.KLAUSNER,T.A.ROUAULT, REMARK 1 AUTH 2 A.PARDI REMARK 1 TITL STRUCTURE AND DYNAMICS OF THE IRON RESPONSIVE REMARK 1 TITL 2 ELEMENT RNA: IMPLICATIONS FOR BINDING OF THE RNA REMARK 1 TITL 3 BY IRON REGULATORY BINDING PROTEINS REMARK 1 REF J.MOL.BIOL. V. 274 72 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1997.1377

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1NBR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB017749.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM NA+ IONS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 21 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 21 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 22 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 22 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 23 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 25 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 25 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 6 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 6 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 G A 17 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 17 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 21 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 21 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 22 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 22 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 23 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 25 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 25 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 348 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AQO RELATED DB: PDB REMARK 900 IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES

DBREF 1NBR A 1 29 PDB 1NBR 1NBR 1 29

SEQRES 1 A 29 G G A G U G C U U C A A C SEQRES 2 A 29 A G U G C U U G G A C G C SEQRES 3 A 29 U C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000