10 20 30 40 50 60 70 80 1N6Z - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-NOV-02 1N6Z
TITLE SOLUTION NMR STRUCTURE OF PROTEIN YML108W FROM TITLE 2 SACCHAROMYCES CEREVISIAE. A NOVEL MEMBER OF THE SPLIT BAB TITLE 3 FOLD. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 4 YT601.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 12.3 KDA PROTEIN IN ZDS2-URA5 COMPND 3 INTERGENIC REGION; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: YML108W; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YML108W OR YM8339.11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS STRUCTURAL PROTEOMICS, STRUCTURAL GENOMICS, OCSP, NESG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR A.PINEDA-LUCENA,C.H.ARROWSMITH,NORTHEAST STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (NESG)
REVDAT 5 24-FEB-09 1N6Z 1 VERSN REVDAT 4 25-JAN-05 1N6Z 1 AUTHOR KEYWDS REVDAT 3 12-OCT-04 1N6Z 1 KEYWDS JRNL REMARK MASTER REVDAT 2 13-MAY-03 1N6Z 1 TITLE REVDAT 1 06-MAY-03 1N6Z 0
JRNL AUTH A.PINEDA-LUCENA,J.C.C.LIAO,J.R.CORT,A.YEE, JRNL AUTH 2 M.A.KENNEDY,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL A NOVEL MEMBER OF THE SPLIT BETA-ALPHA-BETA FOLD: JRNL TITL 2 SOLUTION STRUCTURE OF THE HYPOTHETICAL PROTEIN JRNL TITL 3 YML108W FROM SACCHAROMYCES CEREVISIAE. ONTARIO JRNL TITL 4 CENTRE FOR STRUCTURAL PROTEOMICS TARGET JRNL TITL 5 (YST0204_1_105); NORTHEAST STRUCTURAL GENOMICS JRNL TITL 6 TARGET (YT601). JRNL REF PROTEIN SCI. V. 12 1136 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12717036 JRNL DOI 10.1110/PS.0240903
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1N6Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-02. REMARK 100 THE RCSB ID CODE IS RCSB017596.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 900E-3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM, U-15N,13C 25 MM SODIUM REMARK 210 PHOSPHATE (PH=6.5), 450 MM REMARK 210 NACL, 1 MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, DYANA 1.5, XEASY REMARK 210 1.3.14, CYANA 1.0.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUECLEAR NMR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 154.23 -49.18 REMARK 500 1 ASN A 5 103.29 -164.35 REMARK 500 1 ASN A 20 -158.47 -63.77 REMARK 500 1 ASP A 23 -71.30 -144.98 REMARK 500 1 GLU A 24 100.22 -161.20 REMARK 500 1 LYS A 28 74.41 -65.31 REMARK 500 1 PRO A 44 42.89 -75.00 REMARK 500 1 ASP A 48 40.95 -108.48 REMARK 500 1 GLU A 49 35.47 -151.61 REMARK 500 2 SER A 2 42.88 165.37 REMARK 500 2 LYS A 3 89.81 73.57 REMARK 500 2 SER A 4 -174.56 -179.30 REMARK 500 2 LYS A 18 35.08 -172.37 REMARK 500 2 ASN A 20 -155.76 -64.93 REMARK 500 2 ASP A 23 -65.90 -147.12 REMARK 500 2 PHE A 26 47.83 178.64 REMARK 500 2 HIS A 35 78.97 39.09 REMARK 500 2 PRO A 44 41.53 -74.99 REMARK 500 2 GLU A 49 35.82 -155.42 REMARK 500 3 LYS A 3 166.06 68.40 REMARK 500 3 ASN A 5 108.29 -161.40 REMARK 500 3 THR A 17 -174.77 46.79 REMARK 500 3 ASN A 20 -152.78 -65.22 REMARK 500 3 ASP A 23 -66.56 -150.67 REMARK 500 3 PHE A 26 79.21 179.25 REMARK 500 3 HIS A 35 71.60 46.56 REMARK 500 3 PRO A 44 41.93 -75.04 REMARK 500 3 GLU A 49 38.50 -162.96 REMARK 500 4 SER A 2 -52.76 -129.61 REMARK 500 4 LYS A 3 50.52 -152.75 REMARK 500 4 THR A 17 -174.79 47.40 REMARK 500 4 ASN A 20 -152.27 -64.89 REMARK 500 4 ASP A 23 -65.75 -151.63 REMARK 500 4 PHE A 26 61.80 -168.82 REMARK 500 4 HIS A 35 71.27 44.58 REMARK 500 4 PRO A 44 40.51 -74.95 REMARK 500 4 GLU A 49 36.06 -153.01 REMARK 500 5 SER A 2 35.34 39.17 REMARK 500 5 SER A 4 -55.88 76.38 REMARK 500 5 ASN A 5 122.41 174.07 REMARK 500 5 LYS A 18 74.88 -170.16 REMARK 500 5 ASN A 20 -149.98 -65.10 REMARK 500 5 ASP A 23 -70.77 -153.08 REMARK 500 5 PHE A 26 76.97 -178.60 REMARK 500 5 HIS A 35 74.89 45.86 REMARK 500 5 PRO A 44 41.47 -74.93 REMARK 500 5 GLU A 49 32.62 -159.35 REMARK 500 6 SER A 2 -32.34 157.65 REMARK 500 6 LYS A 3 -70.34 -40.11 REMARK 500 6 ASN A 5 97.11 79.41 REMARK 500 6 TYR A 7 -169.29 -124.02 REMARK 500 6 LYS A 18 79.35 179.18 REMARK 500 6 ASN A 20 -159.96 -64.97 REMARK 500 6 ASP A 23 -67.39 -149.46 REMARK 500 6 GLU A 24 102.62 -161.44 REMARK 500 6 HIS A 35 79.03 50.93 REMARK 500 6 PRO A 44 41.63 -75.11 REMARK 500 6 GLU A 49 38.49 -157.16 REMARK 500 7 SER A 2 -63.58 -99.89 REMARK 500 7 THR A 17 171.85 -58.16 REMARK 500 7 LYS A 18 53.98 -157.83 REMARK 500 7 ASN A 20 -156.13 -62.70 REMARK 500 7 ASP A 23 -66.33 -143.12 REMARK 500 7 LYS A 28 -76.83 -61.84 REMARK 500 7 PRO A 44 41.60 -74.85 REMARK 500 7 ASP A 48 40.18 -107.11 REMARK 500 7 GLU A 49 37.04 -154.18 REMARK 500 8 SER A 2 -29.07 164.38 REMARK 500 8 LYS A 3 -73.56 -116.63 REMARK 500 8 SER A 4 76.17 157.90 REMARK 500 8 ASN A 5 116.25 157.63 REMARK 500 8 LYS A 18 36.50 -177.59 REMARK 500 8 ASN A 20 -162.68 -66.73 REMARK 500 8 ASP A 23 -69.52 -153.92 REMARK 500 8 HIS A 35 73.70 69.54 REMARK 500 8 PRO A 44 41.30 -74.92 REMARK 500 8 ASP A 48 40.64 -108.25 REMARK 500 8 GLU A 49 38.21 -155.69 REMARK 500 9 SER A 4 44.13 160.92 REMARK 500 9 ASN A 5 107.48 172.41 REMARK 500 9 TYR A 7 -169.08 -126.35 REMARK 500 9 THR A 17 97.46 -53.40 REMARK 500 9 ASN A 20 -157.01 -64.49 REMARK 500 9 ASP A 23 -70.69 -141.30 REMARK 500 9 GLU A 24 100.61 -160.76 REMARK 500 9 LYS A 28 68.75 -67.79 REMARK 500 9 HIS A 35 124.80 -38.60 REMARK 500 9 PRO A 44 41.80 -75.00 REMARK 500 9 ASP A 48 41.59 -104.86 REMARK 500 9 GLU A 49 30.05 -150.38 REMARK 500 10 LYS A 3 158.32 -41.18 REMARK 500 10 SER A 4 -69.26 79.58 REMARK 500 10 ASN A 5 125.50 174.80 REMARK 500 10 THR A 17 -161.99 45.54 REMARK 500 10 ASN A 20 -157.04 -65.56 REMARK 500 10 ASP A 23 -66.69 -142.38 REMARK 500 10 GLU A 24 100.03 -160.44 REMARK 500 10 LYS A 28 -91.43 -32.18 REMARK 500 10 HIS A 35 73.11 50.61 REMARK 500 10 PRO A 44 43.12 -74.95 REMARK 500 10 GLU A 49 34.67 -152.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5568 RELATED DB: BMRB REMARK 900 RELATED ID: YT601 RELATED DB: TARGETDB
REMARK 999 REMARK 999 THE PROTEIN THAT WAS STRUCTURALLY DETERMINED REMARK 999 ALSO CONTAINS A HIS TAG PRIOR TO REMARK 999 THE SEQUENCE LISTED IN THE SEQRES. REMARK 999 THE HIS TAG SEQUENCE IS MGSSHHHHHHSSGLVPRGSH. REMARK 999 THESE HIS TAG RESIDUES WERE MISSING IN THE REMARK 999 ELECTRON DENSITY.
DBREF 1N6Z A 1 105 UNP Q03759 YMK8_YEAST 1 105
SEQRES 1 A 105 MET SER LYS SER ASN THR TYR ARG MET LEU VAL LEU LEU SEQRES 2 A 105 GLU ASP ASP THR LYS ILE ASN LYS GLU ASP GLU LYS PHE SEQRES 3 A 105 LEU LYS GLY LYS PRO GLY LYS MET HIS GLU PHE VAL ASP SEQRES 4 A 105 GLU LEU ILE LEU PRO PHE ASN VAL ASP GLU LEU ASP GLU SEQRES 5 A 105 LEU ASN THR TRP PHE ASP LYS PHE ASP ALA GLU ILE CYS SEQRES 6 A 105 ILE PRO ASN GLU GLY HIS ILE LYS TYR GLU ILE SER SER SEQRES 7 A 105 ASP GLY LEU ILE VAL LEU MET LEU ASP LYS GLU ILE GLU SEQRES 8 A 105 GLU VAL VAL GLU LYS VAL LYS LYS PHE VAL GLU GLU ASN SEQRES 9 A 105 ASN
HELIX 1 1 GLU A 49 ILE A 66 1 18 HELIX 2 2 ILE A 90 ASN A 105 1 16
SHEET 1 A 4 PHE A 37 LEU A 43 0 SHEET 2 A 4 TYR A 7 LEU A 13 -1 N MET A 9 O LEU A 41 SHEET 3 A 4 LEU A 81 LEU A 86 1 O LEU A 84 N LEU A 10 SHEET 4 A 4 ILE A 72 SER A 77 -1 N SER A 77 O LEU A 81
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000