10 20 30 40 50 60 70 80 1N4N - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 01-NOV-02 1N4N
TITLE STRUCTURE OF THE PLANT DEFENSIN PHD1 FROM PETUNIA HYBRIDA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLORAL DEFENSIN-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-47; COMPND 5 SYNONYM: PHD1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETUNIA X HYBRIDA; SOURCE 3 ORGANISM_TAXID: 4102
KEYWDS CYSTEINE-STABILISED ALPHA-BETA MOTIF, FIFTH DISULFIDE BOND, KEYWDS 2 PLANT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.J.C.JANSSEN,H.J.SCHIRRA,F.T.LAY,M.A.ANDERSON,D.J.CRAIK
REVDAT 2 24-FEB-09 1N4N 1 VERSN REVDAT 1 01-NOV-03 1N4N 0
JRNL AUTH B.J.C.JANSSEN,H.J.SCHIRRA,F.T.LAY,M.A.ANDERSON, JRNL AUTH 2 D.J.CRAIK JRNL TITL STRUCTURE OF PETUNIA HYBRIDA DEFENSIN 1, A NOVEL JRNL TITL 2 PLANT DEFENSIN WITH FIVE DISULFIDE BONDS JRNL REF BIOCHEMISTRY V. 42 8214 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12846570 JRNL DOI 10.1021/BI034379O
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 407 NOE- REMARK 3 DERIVED INTER-RESIDUAL DISTANCE CONSTRAINTS, 26 PHI- AND 28 REMARK 3 CHI1- ANGLE CONSTRAINTS, AND 30 DISTANCE CONSTRAINTS FOR 15 REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1N4N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-02. REMARK 100 THE RCSB ID CODE IS RCSB017513.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 280 REMARK 210 PH : 3.1; 3.1 REMARK 210 IONIC STRENGTH : 0.94MM; 0.94MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.94MM 1H-PHD1; 0.94MM 1H-PHD1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, CCNMR REMARK 210 GLXCCEXPLORER, X-PLOR 3.851, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANNEALING PROTOCOL, REMARK 210 INCORPORATED IN CNS. REMARK 210 REFINEMENT IN A BOX WITH REMARK 210 EXPLICIT WATER MOLECULES USING REMARK 210 THE METHOD OF LINGE & NILGES REMARK 210 (1999) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 44.50 -89.52 REMARK 500 1 ASP A 11 51.44 -150.36 REMARK 500 1 LYS A 28 49.46 72.52 REMARK 500 1 ILE A 37 -100.64 -69.45 REMARK 500 2 ASP A 11 62.97 -150.75 REMARK 500 2 ILE A 15 -61.09 -130.76 REMARK 500 2 ILE A 37 -82.59 -64.69 REMARK 500 3 THR A 9 47.26 -98.31 REMARK 500 3 ASP A 11 -20.78 -147.63 REMARK 500 3 LYS A 45 -156.23 -161.52 REMARK 500 4 THR A 9 44.10 -97.36 REMARK 500 4 ASP A 11 67.76 -151.11 REMARK 500 4 LYS A 28 61.96 64.29 REMARK 500 4 ILE A 37 -72.19 -67.62 REMARK 500 4 ARG A 40 -145.54 -83.79 REMARK 500 5 THR A 9 48.56 -91.97 REMARK 500 5 SER A 12 -169.21 -100.60 REMARK 500 5 ILE A 37 -105.88 -67.72 REMARK 500 6 THR A 9 49.74 -92.09 REMARK 500 6 ASP A 11 -29.84 -150.11 REMARK 500 6 LYS A 28 70.84 66.55 REMARK 500 6 SER A 35 -159.54 -74.18 REMARK 500 7 THR A 9 46.02 -90.63 REMARK 500 7 ASP A 11 53.07 -150.34 REMARK 500 7 LYS A 28 45.71 72.39 REMARK 500 7 SER A 35 -165.12 -77.97 REMARK 500 7 ILE A 37 -100.74 -77.99 REMARK 500 8 THR A 9 43.71 -90.99 REMARK 500 8 ASP A 11 59.85 -151.20 REMARK 500 8 LYS A 28 43.67 71.07 REMARK 500 8 SER A 35 -157.27 -99.19 REMARK 500 8 LYS A 36 -39.47 -150.32 REMARK 500 8 ILE A 37 -76.93 -55.34 REMARK 500 8 ARG A 40 -91.22 -87.46 REMARK 500 8 CYS A 41 106.76 -176.23 REMARK 500 9 THR A 9 43.56 -90.86 REMARK 500 9 TRP A 10 85.91 -150.32 REMARK 500 9 LYS A 28 35.98 71.55 REMARK 500 9 SER A 35 -156.08 -87.80 REMARK 500 9 LYS A 36 -34.28 -133.58 REMARK 500 9 ILE A 37 -98.96 -61.28 REMARK 500 10 THR A 9 44.48 -86.80 REMARK 500 10 ASP A 11 66.66 -151.22 REMARK 500 10 SER A 35 -159.00 -92.84 REMARK 500 10 ILE A 37 -102.30 -67.43 REMARK 500 11 THR A 9 50.64 -92.83 REMARK 500 11 ASP A 11 -29.51 -150.54 REMARK 500 11 LYS A 28 68.17 65.22 REMARK 500 11 ILE A 37 -101.76 -69.96 REMARK 500 12 THR A 9 45.36 -97.78 REMARK 500 12 ASP A 11 58.97 -148.01 REMARK 500 12 LYS A 28 56.83 71.40 REMARK 500 12 ILE A 37 -75.71 -67.16 REMARK 500 13 THR A 9 45.43 -88.58 REMARK 500 13 ASP A 11 68.57 -150.50 REMARK 500 13 SER A 35 -155.06 -81.45 REMARK 500 13 ILE A 37 -89.63 -60.54 REMARK 500 14 THR A 9 47.30 -92.71 REMARK 500 14 ASP A 11 62.50 -150.71 REMARK 500 14 ILE A 37 -106.17 -71.03 REMARK 500 15 ASP A 11 29.27 -143.58 REMARK 500 15 LYS A 28 57.40 70.51 REMARK 500 15 SER A 35 -162.59 -77.90 REMARK 500 15 ILE A 37 -88.64 -61.11 REMARK 500 16 THR A 2 88.23 -152.73 REMARK 500 16 THR A 9 41.02 -90.44 REMARK 500 16 ASP A 11 55.59 -151.03 REMARK 500 16 ILE A 37 -95.51 -71.65 REMARK 500 16 LYS A 45 -168.68 -160.40 REMARK 500 17 ASP A 11 18.97 -150.35 REMARK 500 17 SER A 35 -156.69 -87.31 REMARK 500 17 LEU A 38 23.03 -140.76 REMARK 500 18 THR A 9 50.52 -93.66 REMARK 500 18 ASP A 11 -28.18 -150.96 REMARK 500 18 LYS A 28 36.08 72.72 REMARK 500 18 ILE A 37 -104.50 -69.98 REMARK 500 19 THR A 9 46.32 -91.14 REMARK 500 19 ASP A 11 57.27 -150.63 REMARK 500 19 LYS A 28 36.02 78.93 REMARK 500 19 ILE A 37 -102.16 -68.85 REMARK 500 20 THR A 9 46.27 -87.19 REMARK 500 20 ASP A 11 60.06 -150.31 REMARK 500 20 SER A 35 -157.03 -79.39 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1N4N A 1 47 UNP Q8H6Q1 DEF1_PETHY 26 72
SEQRES 1 A 47 ALA THR CYS LYS ALA GLU CYS PRO THR TRP ASP SER VAL SEQRES 2 A 47 CYS ILE ASN LYS LYS PRO CYS VAL ALA CYS CYS LYS LYS SEQRES 3 A 47 ALA LYS PHE SER ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 A 47 ARG CYS LEU CYS THR LYS GLU CYS
HELIX 1 1 ASN A 16 ALA A 27 1 12
SHEET 1 A 3 CYS A 3 GLU A 6 0 SHEET 2 A 3 CYS A 41 LYS A 45 -1 O LYS A 45 N CYS A 3 SHEET 3 A 3 ASP A 31 CYS A 34 -1 N HIS A 33 O LEU A 42
SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 7 CYS A 23 1555 1555 2.02 SSBOND 3 CYS A 14 CYS A 34 1555 1555 2.03 SSBOND 4 CYS A 20 CYS A 41 1555 1555 2.02 SSBOND 5 CYS A 24 CYS A 43 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000