1N3B - Header Asymmetric Unit

HEADER TRANSFERASE 25-OCT-02 1N3B

TITLE CRYSTAL STRUCTURE OF DEPHOSPHOCOENZYME A KINASE FROM ESCHERICHIA COLI

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPHOSPHO-COA KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DEPHOSPHOCOENZYME A KINASE; COMPND 5 EC: 2.7.1.24; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: COAE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DL41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B DERIVATIVE

KEYWDS TRIMER, P-LOOP, ALPHA/BETA, MONTREAL-KINGSTON BACTERIAL STRUCTURAL KEYWDS 2 GENOMICS INITIATIVE, BSGI, STRUCTURAL GENOMICS, TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR N.O'TOOLE,J.A.R.G.BARBOSA,Y.LI,L.-W.HUNG,A.MATTE,M.CYGLER,MONTREAL- AUTHOR 2 KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE (BSGI)

REVDAT 4 01-FEB-17 1N3B 1 AUTHOR REVDAT 3 16-APR-14 1N3B 1 REMARK VERSN REVDAT 2 24-FEB-09 1N3B 1 VERSN REVDAT 1 28-JAN-03 1N3B 0

JRNL AUTH N.O'TOOLE,J.A.R.G.BARBOSA,Y.LI,L.-W.HUNG,A.MATTE,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF A TRIMERIC FORM OF DEPHOSPHOCOENZYME A JRNL TITL 2 KINASE FROM ESCHERICHIA COLI JRNL REF PROTEIN SCI. V. 12 327 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12538896 JRNL DOI 10.1110/PS.0227803

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.OBLOMOVA,A.TEPLYAKOV,N.BONANDER,E.EISENSTEIN,A.HOWARD, REMARK 1 AUTH 2 G.GILLILAND REMARK 1 TITL CRYSTAL STRUCTURE OF DEPHOSPHO-COENZYME A KINASE FROM REMARK 1 TITL 2 HAEMOPHILUS INFLUENZAE REMARK 1 REF J.STRUCT.BIOL. V. 136 119 2001 REMARK 1 REFN ISSN 1047-8477 REMARK 1 DOI 10.1006/JSBI.2001.4428 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.K.MISHRA,P.K.PARK,D.G.DRUECKHAMMER REMARK 1 TITL IDENTIFICATION OF YACE (COAE) AS THE STRUCTURAL GENE FOR REMARK 1 TITL 2 DEPHOSPHOCOENZYME A KINASE IN ESCHERICHIA COLI K-12 REMARK 1 REF J.BACTERIOL. V. 183 2774 2001 REMARK 1 REFN ISSN 0021-9193 REMARK 1 DOI 10.1128/JB.183.9.2774-2778.2001 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.VORHEIN,H.BONISCH,G.SCHAFER,G.E.SCHULZ REMARK 1 TITL THE STRUCTURE OF A TRIMERIC ARCHAEL ADENYLATE KINASE REMARK 1 REF J.MOL.BIOL. V. 282 167 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.2003 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.M.WORRAL,P.K.TUBBS REMARK 1 TITL A BIFUNCTIONAL ENZYME COMPLEX IN COENZYME A BIOSYNTHESIS: REMARK 1 TITL 2 PURIFICATION OF PANTETHEINE PHOSPHATE ADENYLYLTRANSFERASE REMARK 1 TITL 3 AND DEPHOSPHO-COA KINASE REMARK 1 REF BIOCHEM.J. V. 215 153 1983 REMARK 1 REFN ISSN 0264-6021 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.AGHAJANIAN,D.M.WORRAL REMARK 1 TITL IDENTIFICATION AND CHARACTERIZATION OF THE GENE ENCODING THE REMARK 1 TITL 2 HUMAN ADENYLYLTRANSFERASE AND DEPHOSPHOCOENZYME A KINASE REMARK 1 TITL 3 BIFUNCTIONAL ENZYME REMARK 1 REF BIOCHEM.J. V. 365 13 2002 REMARK 1 REFN ISSN 0264-6021

REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 107923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 5518 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.260 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 BULK SOLVENT CORRECTION EMPLOYED. REMARK 3 THE STRUCTURE WAS REFINED USING FRIEDEL'S PAIRS.

REMARK 4 REMARK 4 1N3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-02. REMARK 100 THE RCSB ID CODE IS RCSB017465.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957, 0.97941 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MONOCHROMATING CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59512 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CACODYLATE BUFFER, AMMONIUM REMARK 280 SULFATE, GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.20500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 HIS A 53 REMARK 465 PHE A 54 REMARK 465 GLY A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 MSE A 58 REMARK 465 ILE A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 ASP A 62 REMARK 465 GLY A 63 REMARK 465 THR A 64 REMARK 465 LEU A 65 REMARK 465 GLN A 66 REMARK 465 ARG A 67 REMARK 465 ARG A 68 REMARK 465 ALA A 69 REMARK 465 LEU A 70 REMARK 465 ARG A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 73 REMARK 465 ILE A 74 REMARK 465 PHE A 75 REMARK 465 ALA A 76 REMARK 465 ASN A 77 REMARK 465 LYS A 205 REMARK 465 PRO A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 GLY B 207 REMARK 465 SER B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 GLY C 207 REMARK 465 SER C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 HIS C 215 REMARK 465 HIS C 216

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 627 O HOH B 657 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 79 -69.14 73.83 REMARK 500 ASP A 146 70.93 43.06 REMARK 500 ALA B 76 -39.57 75.06 REMARK 500 LEU B 114 30.19 -96.92 REMARK 500 ASN C 77 70.71 168.87 REMARK 500 ASP C 145 -119.83 -137.35 REMARK 500 ASP C 146 -156.64 -155.50 REMARK 500 VAL C 147 65.82 38.57 REMARK 500 THR C 148 -135.48 11.90 REMARK 500 HIS C 151 -54.99 69.94 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: COAE_ECOLI RELATED DB: TARGETDB

DBREF 1N3B A 1 206 UNP P0A6I9 COAE_ECOLI 1 206 DBREF 1N3B B 1 206 UNP P0A6I9 COAE_ECOLI 1 206 DBREF 1N3B C 1 206 UNP P0A6I9 COAE_ECOLI 1 206

SEQADV 1N3B MSE A 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1N3B MSE A 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1N3B MSE A 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1N3B GLY A 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B SER A 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 214 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 215 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS A 216 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B MSE B 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1N3B MSE B 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1N3B MSE B 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1N3B GLY B 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B SER B 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 214 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 215 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS B 216 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B MSE C 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1N3B MSE C 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1N3B MSE C 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1N3B GLY C 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B SER C 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 214 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 215 UNP P0A6I9 EXPRESSION TAG SEQADV 1N3B HIS C 216 UNP P0A6I9 EXPRESSION TAG

SEQRES 1 A 216 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 A 216 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 A 216 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 A 216 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 A 216 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 A 216 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 A 216 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 A 216 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 A 216 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 A 216 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 A 216 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 A 216 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 A 216 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 A 216 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 A 216 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 A 216 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLY SER SEQRES 17 A 216 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 216 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 B 216 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 B 216 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 B 216 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 B 216 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 B 216 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 B 216 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 B 216 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 B 216 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 B 216 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 B 216 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 B 216 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 B 216 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 B 216 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 B 216 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 B 216 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLY SER SEQRES 17 B 216 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 216 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 C 216 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 C 216 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 C 216 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 C 216 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 C 216 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 C 216 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 C 216 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 C 216 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 C 216 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 C 216 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 C 216 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 C 216 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 C 216 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 C 216 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 C 216 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLY SER SEQRES 17 C 216 HIS HIS HIS HIS HIS HIS HIS HIS

MODRES 1N3B MSE A 1 MET SELENOMETHIONINE MODRES 1N3B MSE A 142 MET SELENOMETHIONINE MODRES 1N3B MSE B 1 MET SELENOMETHIONINE MODRES 1N3B MSE B 58 MET SELENOMETHIONINE MODRES 1N3B MSE B 142 MET SELENOMETHIONINE MODRES 1N3B MSE C 1 MET SELENOMETHIONINE MODRES 1N3B MSE C 58 MET SELENOMETHIONINE MODRES 1N3B MSE C 142 MET SELENOMETHIONINE

HET MSE A 1 8 HET MSE A 142 8 HET MSE B 1 8 HET MSE B 58 8 HET MSE B 142 8 HET MSE C 1 8 HET MSE C 58 8 HET MSE C 142 8 HET SO4 A 501 5 HET SO4 B 502 5 HET SO4 C 503 5 HET SO4 C 504 5 HET SO4 A 505 5 HET SO4 B 506 5 HET SO4 C 507 5 HET SO4 C 508 5 HET SO4 B 509 5 HET SO4 A 510 5

HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION

FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 4 SO4 10(O4 S 2-) FORMUL 14 HOH *449(H2 O)

HELIX 1 1 GLY A 14 LEU A 25 1 12 HELIX 2 2 ALA A 32 VAL A 39 1 8 HELIX 3 3 ALA A 44 ALA A 49 1 6 HELIX 4 4 GLU A 79 ALA A 103 1 25 HELIX 5 5 SER A 119 ALA A 124 5 6 HELIX 6 6 SER A 133 ASP A 146 1 14 HELIX 7 7 THR A 148 GLN A 159 1 12 HELIX 8 8 THR A 161 ALA A 169 1 9 HELIX 9 9 ALA A 178 ALA A 181 5 4 HELIX 10 10 ILE A 182 PHE A 200 1 19 HELIX 11 11 GLY B 14 LEU B 25 1 12 HELIX 12 12 ALA B 32 VAL B 39 1 8 HELIX 13 13 ALA B 44 GLY B 55 1 12 HELIX 14 14 ALA B 56 ILE B 59 5 4 HELIX 15 15 GLN B 66 PHE B 75 1 10 HELIX 16 16 ASN B 77 ALA B 103 1 27 HELIX 17 17 SER B 119 ALA B 124 5 6 HELIX 18 18 SER B 133 ASP B 145 1 13 HELIX 19 19 THR B 148 GLN B 159 1 12 HELIX 20 20 THR B 161 ALA B 169 1 9 HELIX 21 21 ALA B 178 ALA B 181 5 4 HELIX 22 22 ILE B 182 PHE B 200 1 19 HELIX 23 23 GLY C 14 ASP C 24 1 11 HELIX 24 24 ALA C 32 VAL C 39 1 8 HELIX 25 25 ALA C 44 GLY C 55 1 12 HELIX 26 26 ALA C 56 ILE C 59 5 4 HELIX 27 27 GLN C 66 ALA C 76 1 11 HELIX 28 28 ASN C 77 ALA C 103 1 27 HELIX 29 29 SER C 119 ALA C 124 5 6 HELIX 30 30 SER C 133 ASP C 145 1 13 HELIX 31 31 HIS C 151 GLN C 159 1 9 HELIX 32 32 THR C 161 ALA C 169 1 9 HELIX 33 33 ALA C 181 PHE C 200 1 20

SHEET 1 A 5 ASN A 28 ASP A 31 0 SHEET 2 A 5 TYR A 107 VAL A 111 1 O LEU A 109 N ILE A 30 SHEET 3 A 5 TYR A 3 THR A 8 1 N LEU A 7 O TRP A 110 SHEET 4 A 5 ARG A 126 ASP A 131 1 O LEU A 128 N ALA A 6 SHEET 5 A 5 ASP A 171 ASP A 174 1 O ILE A 173 N ASP A 131 SHEET 1 B 5 ASN B 28 ASP B 31 0 SHEET 2 B 5 TYR B 107 VAL B 111 1 O LEU B 109 N ILE B 30 SHEET 3 B 5 TYR B 3 THR B 8 1 N LEU B 7 O TRP B 110 SHEET 4 B 5 ARG B 126 ASP B 131 1 O LEU B 128 N ALA B 6 SHEET 5 B 5 ASP B 171 ASP B 174 1 O ILE B 173 N ASP B 131 SHEET 1 C 5 ASN C 28 ASP C 31 0 SHEET 2 C 5 TYR C 107 VAL C 111 1 O LEU C 109 N ILE C 30 SHEET 3 C 5 TYR C 3 THR C 8 1 N VAL C 5 O TRP C 110 SHEET 4 C 5 ARG C 126 ASP C 131 1 O LEU C 128 N ALA C 6 SHEET 5 C 5 ASP C 171 ASP C 174 1 O ILE C 173 N VAL C 129

LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C THR A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLN A 143 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C ASN B 57 N MSE B 58 1555 1555 1.34 LINK C MSE B 58 N ILE B 59 1555 1555 1.33 LINK C THR B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLN B 143 1555 1555 1.33 LINK C MSE C 1 N ARG C 2 1555 1555 1.33 LINK C ASN C 57 N MSE C 58 1555 1555 1.33 LINK C MSE C 58 N ILE C 59 1555 1555 1.33 LINK C THR C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N GLN C 143 1555 1555 1.33

CISPEP 1 ALA C 178 PRO C 179 0 0.35

SITE 1 AC1 8 ILE A 11 GLY A 12 SER A 13 GLY A 14 SITE 2 AC1 8 LYS A 15 ARG A 144 HOH A 528 HOH A 604 SITE 1 AC2 8 ILE B 11 GLY B 12 SER B 13 GLY B 14 SITE 2 AC2 8 LYS B 15 ARG B 144 HOH B 563 HOH B 587 SITE 1 AC3 6 GLY C 12 SER C 13 GLY C 14 LYS C 15 SITE 2 AC3 6 ARG C 144 HOH C 596 SITE 1 AC4 10 SER A 119 TYR A 121 LYS A 122 SER B 119 SITE 2 AC4 10 TYR B 121 LYS B 122 HOH B 554 SER C 119 SITE 3 AC4 10 TYR C 121 LYS C 122 SITE 1 AC5 3 ARG A 126 HIS A 192 HOH A 576 SITE 1 AC6 2 ARG B 126 HIS B 192 SITE 1 AC7 3 ARG C 126 HIS C 192 HOH C 653 SITE 1 AC8 5 HOH B 680 GLN C 93 THR C 96 GLN C 97 SITE 2 AC8 5 TRP C 110 SITE 1 AC9 4 ALA A 157 GLN B 93 GLN B 97 TRP B 110 SITE 1 BC1 6 GLN A 93 THR A 96 GLN A 97 TRP A 110 SITE 2 BC1 6 LYS A 123 HOH C 650

CRYST1 55.500 82.410 76.000 90.00 94.77 90.00 P 1 21 1 6

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.018018 0.000000 0.001504 0.00000

SCALE2 0.000000 0.012134 0.000000 0.00000

SCALE3 0.000000 0.000000 0.013204 0.00000