10 20 30 40 50 60 70 80 1N2X - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 24-OCT-02 1N2X
TITLE CRYSTAL STRUCTURE ANALYSIS OF TM0872, A PUTATIVE SAM- TITLE 2 DEPENDENT METHYLTRANSFERASE, COMPLEXED WITH SAM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYL-METHYLTRANSFERASE MRAW; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TM0872; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0872; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3
KEYWDS SAM-DEPENDENT METHYLTRANSFERASE FOLD, PROTEIN-SAM METHYL KEYWDS 2 DONOR COMPLEX, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.MILLER,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG)
REVDAT 4 24-FEB-09 1N2X 1 VERSN REVDAT 3 18-JAN-05 1N2X 1 AUTHOR KEYWDS REMARK REVDAT 2 23-DEC-03 1N2X 1 JRNL REVDAT 1 28-JAN-03 1N2X 0
JRNL AUTH D.J.MILLER,N.OUELLETTE,E.EVDOKIMOVA,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS,W.F.ANDERSON JRNL TITL CRYSTAL COMPLEXES OF A PREDICTED JRNL TITL 2 S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE JRNL TITL 3 REVEAL A TYPICAL ADOMET BINDING DOMAIN AND A JRNL TITL 4 SUBSTRATE RECOGNITION DOMAIN JRNL REF PROTEIN SCI. V. 12 1432 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 12824489 JRNL DOI 10.1110/PS.0302403
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3187 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 272 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.059 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.472 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.707 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-MULTI-ENDO_REP2.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA2.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 1N2X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017451.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1M6Y REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP- 50 MM NA CACODYLATE PH 6.5, 5 REMARK 280 MM HEPES PH 7.5, 0.1 M AMMONIUM SULFATE, 9 % PEG 8000, 0.25 M REMARK 280 NACL, 1.0 MM BME, 10 MG/ML PROTEIN. WELL- 0.1M NA CACODYLATE REMARK 280 PH 6.5, 0.1 M AMMONIUM SULFATE, 18 % PEG 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.98000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.98000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.98000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.98000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.98000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.98000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.98000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.98000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.98000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.98000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.98000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.98000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.98000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.98000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. THE BIOLOGICAL UNIT IS A REMARK 300 TRIMER ACCORDING TO DYNAMIC LIGHT SCATTERING DATA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 295 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 GLY A 298 REMARK 465 ASP A 299 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 TYR B 4 REMARK 465 SER B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 ILE B 277 REMARK 465 ARG B 278 REMARK 465 GLU B 279 REMARK 465 ASN B 280 REMARK 465 ARG B 293 REMARK 465 ILE B 294 REMARK 465 GLU B 295 REMARK 465 GLU B 296 REMARK 465 GLY B 297 REMARK 465 GLY B 298 REMARK 465 ASP B 299
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 272 CG CD REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 287 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 292 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -122.45 52.04 REMARK 500 ASN A 280 89.62 -177.89 REMARK 500 SER A 285 -4.54 88.66 REMARK 500 PHE B 19 -72.30 -112.24 REMARK 500 LYS B 21 70.83 60.15 REMARK 500 GLU B 23 -160.18 48.91 REMARK 500 GLU B 25 85.02 65.49 REMARK 500 GLU B 44 45.25 -84.31 REMARK 500 HIS B 45 -31.03 -157.99 REMARK 500 ASP B 73 2.09 -52.15 REMARK 500 TYR B 82 4.08 -62.80 REMARK 500 PRO B 235 103.26 -52.77 REMARK 500 THR B 266 115.14 -172.89 REMARK 500 PRO B 272 -150.47 -112.97 REMARK 500 ARG B 282 -70.45 -41.71 REMARK 500 ARG B 284 -79.46 -115.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 402
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SAH REMARK 900 RELATED ID: APC038 RELATED DB: TARGETDB
DBREF 1N2X A 1 299 UNP Q9WZX6 MRAW_THEMA 1 299 DBREF 1N2X B 1 299 UNP Q9WZX6 MRAW_THEMA 1 299
SEQADV 1N2X GLY A -1 UNP Q9WZX6 CLONING ARTIFACT SEQADV 1N2X HIS A 0 UNP Q9WZX6 CLONING ARTIFACT SEQADV 1N2X MSE A 1 UNP Q9WZX6 MET 1 MODIFIED RESIDUE SEQADV 1N2X MSE A 12 UNP Q9WZX6 MET 12 MODIFIED RESIDUE SEQADV 1N2X MSE A 102 UNP Q9WZX6 MET 102 MODIFIED RESIDUE SEQADV 1N2X MSE A 128 UNP Q9WZX6 MET 128 MODIFIED RESIDUE SEQADV 1N2X MSE A 130 UNP Q9WZX6 MET 130 MODIFIED RESIDUE SEQADV 1N2X GLY B -1 UNP Q9WZX6 CLONING ARTIFACT SEQADV 1N2X HIS B 0 UNP Q9WZX6 CLONING ARTIFACT SEQADV 1N2X MSE B 1 UNP Q9WZX6 MET 1 MODIFIED RESIDUE SEQADV 1N2X MSE B 12 UNP Q9WZX6 MET 12 MODIFIED RESIDUE SEQADV 1N2X MSE B 102 UNP Q9WZX6 MET 102 MODIFIED RESIDUE SEQADV 1N2X MSE B 128 UNP Q9WZX6 MET 128 MODIFIED RESIDUE SEQADV 1N2X MSE B 130 UNP Q9WZX6 MET 130 MODIFIED RESIDUE
SEQRES 1 A 301 GLY HIS MSE ARG LYS TYR SER GLN ARG HIS ILE PRO VAL SEQRES 2 A 301 MSE VAL ARG GLU VAL ILE GLU PHE LEU LYS PRO GLU ASP SEQRES 3 A 301 GLU LYS ILE ILE LEU ASP CYS THR VAL GLY GLU GLY GLY SEQRES 4 A 301 HIS SER ARG ALA ILE LEU GLU HIS CYS PRO GLY CYS ARG SEQRES 5 A 301 ILE ILE GLY ILE ASP VAL ASP SER GLU VAL LEU ARG ILE SEQRES 6 A 301 ALA GLU GLU LYS LEU LYS GLU PHE SER ASP ARG VAL SER SEQRES 7 A 301 LEU PHE LYS VAL SER TYR ARG GLU ALA ASP PHE LEU LEU SEQRES 8 A 301 LYS THR LEU GLY ILE GLU LYS VAL ASP GLY ILE LEU MSE SEQRES 9 A 301 ASP LEU GLY VAL SER THR TYR GLN LEU LYS GLY GLU ASN SEQRES 10 A 301 ARG GLY PHE THR PHE GLU ARG GLU GLU PRO LEU ASP MSE SEQRES 11 A 301 ARG MSE ASP LEU GLU SER GLU VAL THR ALA GLN LYS VAL SEQRES 12 A 301 LEU ASN GLU LEU PRO GLU GLU GLU LEU ALA ARG ILE ILE SEQRES 13 A 301 PHE GLU TYR GLY GLU GLU LYS ARG PHE ALA ARG ARG ILE SEQRES 14 A 301 ALA ARG LYS ILE VAL GLU ASN ARG PRO LEU ASN THR THR SEQRES 15 A 301 LEU ASP LEU VAL LYS ALA VAL ARG GLU ALA LEU PRO SER SEQRES 16 A 301 TYR GLU ILE ARG ARG ARG LYS ARG HIS PHE ALA THR LYS SEQRES 17 A 301 THR PHE GLN ALA ILE ARG ILE TYR VAL ASN ARG GLU LEU SEQRES 18 A 301 GLU ASN LEU LYS GLU PHE LEU LYS LYS ALA GLU ASP LEU SEQRES 19 A 301 LEU ASN PRO GLY GLY ARG ILE VAL VAL ILE SER PHE HIS SEQRES 20 A 301 SER LEU GLU ASP ARG ILE VAL LYS GLU THR PHE ARG ASN SEQRES 21 A 301 SER LYS LYS LEU ARG ILE LEU THR GLU LYS PRO VAL ARG SEQRES 22 A 301 PRO SER GLU GLU GLU ILE ARG GLU ASN PRO ARG ALA ARG SEQRES 23 A 301 SER GLY ARG LEU ARG ALA ALA GLU ARG ILE GLU GLU GLY SEQRES 24 A 301 GLY ASP SEQRES 1 B 301 GLY HIS MSE ARG LYS TYR SER GLN ARG HIS ILE PRO VAL SEQRES 2 B 301 MSE VAL ARG GLU VAL ILE GLU PHE LEU LYS PRO GLU ASP SEQRES 3 B 301 GLU LYS ILE ILE LEU ASP CYS THR VAL GLY GLU GLY GLY SEQRES 4 B 301 HIS SER ARG ALA ILE LEU GLU HIS CYS PRO GLY CYS ARG SEQRES 5 B 301 ILE ILE GLY ILE ASP VAL ASP SER GLU VAL LEU ARG ILE SEQRES 6 B 301 ALA GLU GLU LYS LEU LYS GLU PHE SER ASP ARG VAL SER SEQRES 7 B 301 LEU PHE LYS VAL SER TYR ARG GLU ALA ASP PHE LEU LEU SEQRES 8 B 301 LYS THR LEU GLY ILE GLU LYS VAL ASP GLY ILE LEU MSE SEQRES 9 B 301 ASP LEU GLY VAL SER THR TYR GLN LEU LYS GLY GLU ASN SEQRES 10 B 301 ARG GLY PHE THR PHE GLU ARG GLU GLU PRO LEU ASP MSE SEQRES 11 B 301 ARG MSE ASP LEU GLU SER GLU VAL THR ALA GLN LYS VAL SEQRES 12 B 301 LEU ASN GLU LEU PRO GLU GLU GLU LEU ALA ARG ILE ILE SEQRES 13 B 301 PHE GLU TYR GLY GLU GLU LYS ARG PHE ALA ARG ARG ILE SEQRES 14 B 301 ALA ARG LYS ILE VAL GLU ASN ARG PRO LEU ASN THR THR SEQRES 15 B 301 LEU ASP LEU VAL LYS ALA VAL ARG GLU ALA LEU PRO SER SEQRES 16 B 301 TYR GLU ILE ARG ARG ARG LYS ARG HIS PHE ALA THR LYS SEQRES 17 B 301 THR PHE GLN ALA ILE ARG ILE TYR VAL ASN ARG GLU LEU SEQRES 18 B 301 GLU ASN LEU LYS GLU PHE LEU LYS LYS ALA GLU ASP LEU SEQRES 19 B 301 LEU ASN PRO GLY GLY ARG ILE VAL VAL ILE SER PHE HIS SEQRES 20 B 301 SER LEU GLU ASP ARG ILE VAL LYS GLU THR PHE ARG ASN SEQRES 21 B 301 SER LYS LYS LEU ARG ILE LEU THR GLU LYS PRO VAL ARG SEQRES 22 B 301 PRO SER GLU GLU GLU ILE ARG GLU ASN PRO ARG ALA ARG SEQRES 23 B 301 SER GLY ARG LEU ARG ALA ALA GLU ARG ILE GLU GLU GLY SEQRES 24 B 301 GLY ASP
MODRES 1N2X MSE A 12 MET SELENOMETHIONINE MODRES 1N2X MSE A 102 MET SELENOMETHIONINE MODRES 1N2X MSE A 128 MET SELENOMETHIONINE MODRES 1N2X MSE A 130 MET SELENOMETHIONINE MODRES 1N2X MSE B 12 MET SELENOMETHIONINE MODRES 1N2X MSE B 102 MET SELENOMETHIONINE MODRES 1N2X MSE B 128 MET SELENOMETHIONINE MODRES 1N2X MSE B 130 MET SELENOMETHIONINE
HET MSE A 12 8 HET MSE A 102 8 HET MSE A 128 8 HET MSE A 130 8 HET MSE B 12 8 HET MSE B 102 8 HET MSE B 128 8 HET MSE B 130 8 HET SO4 A 500 5 HET SO4 B 501 5 HET SAM A 401 27 HET SAM B 402 27
HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM SAM S-ADENOSYLMETHIONINE
FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 SAM 2(C15 H22 N6 O5 S) FORMUL 7 HOH *349(H2 O)
HELIX 1 1 MSE A 12 LYS A 21 1 10 HELIX 2 2 GLY A 36 CYS A 46 1 11 HELIX 3 3 ASP A 57 LEU A 68 1 12 HELIX 4 4 LYS A 69 SER A 72 5 4 HELIX 5 5 SER A 81 ARG A 83 5 3 HELIX 6 6 GLU A 84 LEU A 92 1 9 HELIX 7 7 SER A 107 GLY A 113 1 7 HELIX 8 8 THR A 137 LEU A 145 1 9 HELIX 9 9 PRO A 146 TYR A 157 1 12 HELIX 10 10 PHE A 163 ASN A 174 1 12 HELIX 11 11 THR A 179 LEU A 191 1 13 HELIX 12 12 PRO A 192 ARG A 199 1 8 HELIX 13 13 ALA A 204 ARG A 217 1 14 HELIX 14 14 ARG A 217 ALA A 229 1 13 HELIX 15 15 HIS A 245 SER A 259 1 15 HELIX 16 16 SER A 273 GLU A 279 1 7 HELIX 17 17 ASN A 280 ARG A 284 5 5 HELIX 18 18 MSE B 12 LYS B 21 1 10 HELIX 19 19 HIS B 38 LEU B 43 1 6 HELIX 20 20 ASP B 57 LYS B 67 1 11 HELIX 21 21 PHE B 71 ASP B 73 5 3 HELIX 22 22 GLU B 84 GLY B 93 1 10 HELIX 23 23 SER B 107 GLY B 113 1 7 HELIX 24 24 THR B 137 LEU B 145 1 9 HELIX 25 25 PRO B 146 GLY B 158 1 13 HELIX 26 26 PHE B 163 ASN B 174 1 12 HELIX 27 27 THR B 179 LEU B 191 1 13 HELIX 28 28 PRO B 192 ARG B 199 1 8 HELIX 29 29 ALA B 204 ASN B 216 1 13 HELIX 30 30 ARG B 217 ALA B 229 1 13 HELIX 31 31 HIS B 245 ASN B 258 1 14
SHEET 1 A 7 VAL A 75 LYS A 79 0 SHEET 2 A 7 ARG A 50 ASP A 55 1 N GLY A 53 O SER A 76 SHEET 3 A 7 ILE A 27 ASP A 30 1 N ILE A 28 O ARG A 50 SHEET 4 A 7 VAL A 97 ASP A 103 1 O GLY A 99 N LEU A 29 SHEET 5 A 7 LEU A 233 SER A 243 1 O VAL A 240 N ILE A 100 SHEET 6 A 7 ARG A 287 ARG A 293 -1 O ARG A 287 N SER A 243 SHEET 7 A 7 LEU A 262 ILE A 264 -1 N ARG A 263 O GLU A 292 SHEET 1 B 7 VAL B 75 PHE B 78 0 SHEET 2 B 7 ARG B 50 ILE B 54 1 N GLY B 53 O PHE B 78 SHEET 3 B 7 ILE B 27 ASP B 30 1 N ILE B 28 O ILE B 52 SHEET 4 B 7 VAL B 97 ASP B 103 1 O LEU B 101 N LEU B 29 SHEET 5 B 7 LEU B 233 SER B 243 1 O VAL B 240 N ILE B 100 SHEET 6 B 7 ARG B 263 ILE B 264 -1
SSBOND 1 CYS A 46 CYS A 49 1555 1555 2.06 SSBOND 2 CYS B 46 CYS B 49 1555 1555 2.03
LINK C VAL A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N VAL A 13 1555 1555 1.33 LINK C LEU A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N ASP A 103 1555 1555 1.32 LINK C ASP A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N ARG A 129 1555 1555 1.32 LINK C ARG A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ASP A 131 1555 1555 1.33 LINK C VAL B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N VAL B 13 1555 1555 1.33 LINK C LEU B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N ASP B 103 1555 1555 1.33 LINK C ASP B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N ARG B 129 1555 1555 1.33 LINK C ARG B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N ASP B 131 1555 1555 1.33
CISPEP 1 ARG A 175 PRO A 176 0 -0.39 CISPEP 2 ARG B 175 PRO B 176 0 -0.11
SITE 1 AC1 3 ARG A 199 LYS A 200 ARG A 201 SITE 1 AC2 6 ARG B 199 LYS B 200 ARG B 201 HOH B 511 SITE 2 AC2 6 HOH B 552 HOH B 592 SITE 1 AC3 25 HIS A 8 CYS A 31 THR A 32 VAL A 33 SITE 2 AC3 25 GLY A 34 GLU A 35 GLY A 36 GLY A 37 SITE 3 AC3 25 HIS A 38 ASP A 55 VAL A 56 SER A 81 SITE 4 AC3 25 TYR A 82 ASP A 103 LEU A 104 GLY A 105 SITE 5 AC3 25 GLN A 110 MSE A 130 ASN A 221 ARG A 282 SITE 6 AC3 25 HOH A 520 HOH A 529 HOH A 567 HOH A 705 SITE 7 AC3 25 HOH A 708 SITE 1 AC4 20 HIS B 8 THR B 32 VAL B 33 GLY B 34 SITE 2 AC4 20 GLU B 35 GLY B 36 GLY B 37 HIS B 38 SITE 3 AC4 20 ASP B 55 VAL B 56 VAL B 60 VAL B 80 SITE 4 AC4 20 SER B 81 TYR B 82 ASP B 103 GLY B 105 SITE 5 AC4 20 VAL B 106 GLN B 110 MSE B 130 ASN B 221
CRYST1 133.960 133.960 133.960 90.00 90.00 90.00 P 21 3 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007465 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007465 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007465 0.00000